MD03G1073800.v1.1

50S ribosomal protein L4

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
6003561 .. 6005803
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1073800.v1.1.491

Sequence Viewer

Length: 891 bp
ATGGCGACCTCCGCAGCGCCCATATCGCTCTCCTTTTTCACCTCCTCAATCTTCCTCCCCTCCTCGTCCCACAAACCCTTCTCAGTCCTCGCACCCACCAATTCTCTCAAAACTCCCAAACCCCTCATCGTCTCCGCTGAGCTCGCCACCCTCCCAGTCCTCTCCTTCACCGGAGATAAGGTCGGCGAGACCTTCCTCGACCTCAAGTCCGCGCTACCGGATACCGCTCGTGCCGTCGTCCACCGCGCCATCATCACTGATCTCCAGAACAAGCGCCGCGGCACAGCATCCACCCTCACCCGAGCGGAGGTCAGCGGAGGAGGGAGAAAACCCTACCCGCAGAAGAAGACGGGTCGTGCCCGTCAGGGTTCGACCCGCACCCCGCTCAGGCCCGGCGGAGGGGTCGTGTTCGGACCCAAGCCCAGGGATTGGAGCATCAAGATCAATCGAAAGGAGAAACGGCTCGCGATTTCGACGGCGGTGGCGAGCGCGGCGGAGAACACAATCGTGGTGGAGGATTTCAGTGACGAGTTTGAGAAGCCGAAGACGACGGAGTTTATTGCGGCGATGAGGAGGTGGGGTTTGGACCCGAAGGAGAAGACGACGTTTCTGGTGACGGAGGTGGCGAACAATGTGAGGCTTTCGAGCAGAAATATTGGGACTTTGAAGATGCTGACGCCGAGGACTTTGAATCTGTTCGATATTTTGAATGCCGATAAGTTGATCATGACGCCGGAGACAGTGGATTATCTGAATGCGAGGTATGGGGTTGATTACGATGGAGAGACGGAGGACGAGGAGGACCACGAAGAGGGTGCAGAGCTGGAAGAAGACGGAGGAGTTGACGTTCAAGGGACAGCGGCAGATGAGAGTTCTGATGCGGCCGAGTGA

Protein Analysis

297

Amino Acids

32.16

Weight (kDa)

5.64

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L4 PF00573 76 - 253 3.8e-57 Ribosomal protein L4/L1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 429
AccBSI CCGCTC 3 cut(s) 227, 305, 385
AccII CGCG 5 cut(s) 212, 246, 279, 467, 491
AcoI YGGCCR 1 cut(s) 882
AcyI GRCGYC 2 cut(s) 677, 731
AfiI CCNNNNNNNGG 7 cut(s) 307, 387, 398, 399, 423, 429, 811
AgsI TTSAA 4 cut(s) 667, 691, 709, 851
AhdI GACNNNNNGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 422
AleI CACNNNNGTG 1 cut(s) 506
AloI GAACNNNNNNTCC 2 cut(s) 831, 863
AluBI AGCT 2 cut(s) 142, 823
AluI AGCT 2 cut(s) 142, 823
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 4 cut(s) 136, 182, 731, 779
Ama87I CYCGRG 1 cut(s) 300
AoxI GGCC 2 cut(s) 389, 882
ApeKI GCWGC 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 695
AspLEI GCGC 5 cut(s) 19, 214, 248, 276, 491
AspS9I GGNCC 4 cut(s) 390, 413, 586, 802
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 4 cut(s) 31, 160, 289, 625
AvaI CYCGRG 1 cut(s) 300
AvaII GGWCC 3 cut(s) 413, 586, 802
BaeGI GKGCMC 1 cut(s) 361
BanII GRGCYC 1 cut(s) 144
BauI CACGAG 1 cut(s) 228
BbsI GAAGAC 4 cut(s) 353, 551, 605, 837
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 26
BccI CCATC 2 cut(s) 257, 773
BceAI ACGGC 3 cut(s) 218, 476, 492
BcgI CGANNNNNNTGC 2 cut(s) 797, 831
BciT130I CCWGG 1 cut(s) 424
BciVI GTATCC 1 cut(s) 214
BclI TGATCA 1 cut(s) 723
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 4 cut(s) 136, 182, 731, 779
BfoI RGCGCY 2 cut(s) 20, 277
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 7 cut(s) 15, 277, 280, 492, 564, 861, 882
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 7 cut(s) 16, 278, 281, 493, 565, 862, 883
Bme1390I CCNGG 2 cut(s) 393, 424
Bme18I GGWCC 3 cut(s) 413, 586, 802
BmeRI GACNNNNNGTC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 300
BmgT120I GGNCC 4 cut(s) 390, 413, 586, 802
BmiI GGNNCC 2 cut(s) 415, 588
BmrFI CCNGG 2 cut(s) 393, 424
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 4 cut(s) 296, 444, 660, 868
BmuI ACTGGG 1 cut(s) 149
BpiI GAAGAC 4 cut(s) 353, 551, 605, 837
BpmI CTGGAG 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 386
Bpu1102I GCTNAGC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 393
BsaHI GRCGYC 2 cut(s) 677, 731
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 4 cut(s) 277, 422, 423, 680
BsaWI WCCGGW 2 cut(s) 170, 217
BsaXI ACNNNNNCTCC 8 cut(s) 165, 195, 390, 420, 565, 595, 831, 861
Bsc4I CCNNNNNNNGG 7 cut(s) 307, 387, 398, 399, 423, 429, 811
Bse1I ACTGG 1 cut(s) 155
BseBI CCWGG 1 cut(s) 424
BseDI CCNNGG 4 cut(s) 277, 422, 423, 680
BseGI GGATG 1 cut(s) 287
BseLI CCNNNNNNNGG 7 cut(s) 307, 387, 398, 399, 423, 429, 811
BseMII CTCAG 3 cut(s) 96, 129, 400
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 6 cut(s) 34, 52, 333, 586, 812, 852
BseSI GKGCMC 1 cut(s) 361
BseX3I CGGCCG 1 cut(s) 882
BseXI GCAGC 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 837
Bsh1236I CGCG 5 cut(s) 212, 246, 279, 467, 491
Bsh1285I CGRYCG 1 cut(s) 885
BshFI GGCC 2 cut(s) 391, 884
BsiEI CGRYCG 1 cut(s) 885
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 4 cut(s) 171, 218, 393, 734
BslFI GGGAC 3 cut(s) 52, 673, 868
BslI CCNNNNNNNGG 7 cut(s) 307, 387, 398, 399, 423, 429, 811
BsmAI GTCTC 4 cut(s) 136, 182, 731, 779
BsmBI CGTCTC 2 cut(s) 136, 779
BsmFI GGGAC 3 cut(s) 52, 673, 868
BsmI GAATGC 2 cut(s) 715, 760
BsnI GGCC 2 cut(s) 391, 884
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 300
Bsp1286I GDGCHC 2 cut(s) 144, 361
Bsp143I GATC 3 cut(s) 259, 441, 723
Bsp1720I GCTNAGC 1 cut(s) 138
Bsp68I TCGCGA 1 cut(s) 467
BspANI GGCC 2 cut(s) 391, 884
BspCNI CTCAG 3 cut(s) 95, 130, 399
BspFNI CGCG 5 cut(s) 212, 246, 279, 467, 491
BspHI TCATGA 1 cut(s) 726
BspLI GGNNCC 2 cut(s) 415, 588
BspTNI GGTCTC 1 cut(s) 182
BsrBI CCGCTC 3 cut(s) 227, 305, 385
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 4 cut(s) 277, 422, 423, 680
BssMI GATC 3 cut(s) 259, 441, 723
BssNI GRCGYC 2 cut(s) 677, 731
BssSI CACGAG 1 cut(s) 228
Bst2BI CACGAG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 424
Bst4CI ACNGT 1 cut(s) 742
Bst6I CTCTTC 1 cut(s) 804
BstACI GRCGYC 2 cut(s) 677, 731
BstC8I GCNNGC 3 cut(s) 144, 465, 487
BstDEI CTNAG 3 cut(s) 82, 138, 386
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 287
BstFNI CGCG 5 cut(s) 212, 246, 279, 467, 491
BstH2I RGCGCY 2 cut(s) 20, 277
BstHHI GCGC 5 cut(s) 19, 214, 248, 276, 491
BstKTI GATC 3 cut(s) 262, 444, 726
BstMAI GTCTC 4 cut(s) 136, 182, 731, 779
BstMBI GATC 3 cut(s) 259, 441, 723
BstMCI CGRYCG 1 cut(s) 885
BstMWI GCNNNNNNNGC 4 cut(s) 11, 25, 143, 491
BstNI CCWGG 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 391, 422
BstSLI GKGCMC 1 cut(s) 361
BstUI CGCG 5 cut(s) 212, 246, 279, 467, 491
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 4 cut(s) 353, 551, 605, 837
BstZI CGGCCG 1 cut(s) 882
BsuI GTATCC 1 cut(s) 214
BsuRI GGCC 2 cut(s) 391, 884
BtgI CCRYGG 1 cut(s) 277
BtgZI GCGATG 1 cut(s) 581
BtsCI GGATG 1 cut(s) 287
BtsIMutI CAGTG 3 cut(s) 255, 529, 747
BtuMI TCGCGA 1 cut(s) 467
Cac8I GCNNGC 3 cut(s) 144, 465, 487
CciI TCATGA 1 cut(s) 726
CfoI GCGC 5 cut(s) 19, 214, 248, 276, 491
Cfr13I GGNCC 4 cut(s) 390, 413, 586, 802
Cfr42I CCGCGG 1 cut(s) 280
CseI GACGC 2 cut(s) 685, 739
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
CviAII CATG 1 cut(s) 727
CviJI RGCY 8 cut(s) 142, 391, 421, 463, 541, 640, 823, 884
CviKI_1 RGCY 8 cut(s) 142, 391, 421, 463, 541, 640, 823, 884
DdeI CTNAG 3 cut(s) 82, 138, 386
DpnI GATC 3 cut(s) 261, 443, 725
DpnII GATC 3 cut(s) 259, 441, 723
DriI GACNNNNNGTC 1 cut(s) 205
EaeI YGGCCR 1 cut(s) 882
EagI CGGCCG 1 cut(s) 882
Eam1104I CTCTTC 1 cut(s) 804
Eam1105I GACNNNNNGTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 804
EciI GGCGGA 2 cut(s) 411, 509
Ecl136II GAGCTC 1 cut(s) 142
EclXI CGGCCG 1 cut(s) 882
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 3 cut(s) 413, 586, 802
Eco52I CGGCCG 1 cut(s) 882
Eco53kI GAGCTC 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 422
EcoT38I GRGCYC 1 cut(s) 144
Esp3I CGTCTC 2 cut(s) 136, 779
FaeI CATG 1 cut(s) 730
FaiI YATR 3 cut(s) 23, 728, 765
FaqI GGGAC 3 cut(s) 52, 673, 868
FatI CATG 1 cut(s) 726
FauI CCCGC 3 cut(s) 345, 383, 390
FbaI TGATCA 1 cut(s) 723
Fnu4HI GCNGC 7 cut(s) 15, 277, 280, 492, 564, 861, 882
FokI GGATG 1 cut(s) 274
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 7 cut(s) 15, 277, 280, 492, 564, 861, 882
GlaI GCGC 5 cut(s) 18, 213, 247, 275, 490
GluI GCNGC 7 cut(s) 15, 277, 280, 492, 564, 861, 882
GsuI CTGGAG 1 cut(s) 248
HaeII RGCGCY 2 cut(s) 20, 277
HaeIII GGCC 2 cut(s) 391, 884
HapII CCGG 4 cut(s) 171, 218, 393, 734
HgaI GACGC 2 cut(s) 685, 739
HhaI GCGC 5 cut(s) 19, 214, 248, 276, 491
Hin1I GRCGYC 2 cut(s) 677, 731
Hin1II CATG 1 cut(s) 730
Hin6I GCGC 5 cut(s) 17, 212, 246, 274, 489
HinP1I GCGC 5 cut(s) 17, 212, 246, 274, 489
HincII GTYRAC 1 cut(s) 844
HindII GTYRAC 1 cut(s) 844
HinfI GANTC 1 cut(s) 691
HpaII CCGG 4 cut(s) 171, 218, 393, 734
HphI GGTGA 4 cut(s) 31, 160, 289, 625
Hpy166II GTNNAC 2 cut(s) 241, 844
Hpy188I TCNGA 3 cut(s) 413, 753, 877
Hpy188III TCNNGA 4 cut(s) 265, 439, 466, 727
Hpy8I GTNNAC 2 cut(s) 241, 844
Hpy99I CGWCG 4 cut(s) 239, 478, 553, 607
HpyAV CCTTC 4 cut(s) 88, 175, 202, 586
HpyCH4III ACNGT 1 cut(s) 742
HpyCH4IV ACGT 2 cut(s) 605, 846
HpyCH4V TGCA 1 cut(s) 818
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 25, 143, 491
HpyF3I CTNAG 3 cut(s) 82, 138, 386
HpySE526I ACGT 2 cut(s) 605, 846
Hsp92I GRCGYC 2 cut(s) 677, 731
Hsp92II CATG 1 cut(s) 730
HspAI GCGC 5 cut(s) 17, 212, 246, 274, 489
Ksp22I TGATCA 1 cut(s) 723
KspI CCGCGG 1 cut(s) 280
Kzo9I GATC 3 cut(s) 259, 441, 723
LmnI GCTCC 1 cut(s) 432
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 4 cut(s) 296, 444, 660, 868
MaeII ACGT 2 cut(s) 605, 846
MaeIII GTNAC 2 cut(s) 524, 613
MalI GATC 3 cut(s) 261, 443, 725
MbiI CCGCTC 3 cut(s) 227, 305, 385
MboI GATC 3 cut(s) 259, 441, 723
MboII GAAGA 9 cut(s) 43, 355, 358, 556, 610, 679, 821, 839, 842
MhlI GDGCHC 2 cut(s) 144, 361
MluCI AATT 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 695
MslI CAYNNNNRTG 1 cut(s) 506
MspA1I CMGCKG 4 cut(s) 137, 279, 315, 860
MspI CCGG 4 cut(s) 171, 218, 393, 734
MspR9I CCNGG 2 cut(s) 393, 424
Mva1269I GAATGC 2 cut(s) 715, 760
MvaI CCWGG 1 cut(s) 424
MvnI CGCG 5 cut(s) 212, 246, 279, 467, 491
MwoI GCNNNNNNNGC 4 cut(s) 11, 25, 143, 491
NciI CCSGG 1 cut(s) 393
NdeII GATC 3 cut(s) 259, 441, 723
NlaIII CATG 1 cut(s) 730
NlaIV GGNNCC 2 cut(s) 415, 588
NmeAIII GCCGAG 1 cut(s) 705
NmuCI GTSAC 2 cut(s) 524, 613
NruI TCGCGA 1 cut(s) 467
OliI CACNNNNGTG 1 cut(s) 506
PagI TCATGA 1 cut(s) 726
PasI CCCWGGG 1 cut(s) 423
PcsI WCGNNNNNNNCGW 2 cut(s) 482, 623
PctI GAATGC 2 cut(s) 715, 760
PdmI GAANNNNTTC 1 cut(s) 695
PfeI GAWTC 1 cut(s) 691
PflMI CCANNNNNTGG 1 cut(s) 429
PkrI GCNGC 7 cut(s) 16, 278, 281, 493, 565, 862, 883
Psp124BI GAGCTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 422
PspGI CCWGG 1 cut(s) 422
PspN4I GGNNCC 2 cut(s) 415, 588
PspPI GGNCC 4 cut(s) 390, 413, 586, 802
RruI TCGCGA 1 cut(s) 467
RseI CAYNNNNRTG 1 cut(s) 506
SacI GAGCTC 1 cut(s) 144
SacII CCGCGG 1 cut(s) 280
SatI GCNGC 7 cut(s) 15, 277, 280, 492, 564, 861, 882
Sau3AI GATC 3 cut(s) 259, 441, 723
Sau96I GGNCC 4 cut(s) 390, 413, 586, 802
ScrFI CCNGG 2 cut(s) 393, 424
SduI GDGCHC 2 cut(s) 144, 361
SfaNI GCATC 4 cut(s) 296, 444, 660, 868
Sfr303I CCGCGG 1 cut(s) 280
SgrBI CCGCGG 1 cut(s) 280
SinI GGWCC 3 cut(s) 413, 586, 802
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 100
SspI AATATT 1 cut(s) 655
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 391, 422
TaaI ACNGT 1 cut(s) 742
TaiI ACGT 2 cut(s) 608, 849
TaqI TCGA 6 cut(s) 198, 371, 448, 473, 644, 699
TasI AATT 1 cut(s) 100
TauI GCSGC 6 cut(s) 279, 282, 494, 566, 863, 884
TfiI GAWTC 1 cut(s) 691
TscAI CASTG 3 cut(s) 262, 529, 747
TseFI GTSAC 2 cut(s) 524, 613
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 2 cut(s) 524, 613
TspGWI ACGGA 4 cut(s) 566, 632, 803, 849
TspRI CASTG 3 cut(s) 262, 529, 747
Van91I CCANNNNNTGG 1 cut(s) 429
VpaK11BI GGWCC 3 cut(s) 413, 586, 802
XmnI GAANNNNTTC 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.