RLG00000014184

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004823
Physical Location & Seq
Forward (+)
48878956 .. 48880749
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014184

Sequence Viewer

Length: 582 bp
ATGGTGGAGGATTTTAGCGATGAGTTTGAGAAGTTGGAGAATCCGGAGACAACAAAGTTCATTGGGGCGATGAAGAGGAGAGACAATATCGAGGTCTGGGAAGAGATGGGCTTGTGGGGAGAAGGGATGAAAACCAATCATATCAGCCCACGGGCTAATATGATCAGATCTCCCAATATGACGTCGCTACGATTATCACTGACTATGTCAACCACCGCAAGGTTCTCCACTCGGCCAAGAAGACGAGGATCGTTTGCAACCAAGGGCTTCTTTCTCTGTTTGGGAAGAAGACGATTGCTCGTATCAAGATCTACAATTTGCTCCAACTGCATTTCGCTGATAATCTCGAGGACGATTCCGATAATTCGTCTGACGAGTGCAACGACAACGTTTTGGATGAGGACGACAAAGATAAGCAACGACAGCAACAGGGGAAGAAGCAGAAGAGGAAAGCCGCTGCTTTGCATGCCCTCCTCCGACTCTGAAAAGCTGTTTCGTTGCAGTGATTTCGGAGAATTTGAAGTTGATGTACCTGAGGAGATTGGTGGTGATAACTATAAGAAATTTGGCGACAAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.09

Weight (kDa)

9.79

Isoelectric Point (pI)

66.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 185
AccIII TCCGGA 1 cut(s) 43
AciI CCGC 2 cut(s) 216, 455
AclI AACGTT 1 cut(s) 389
AclWI GGATC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 233
AcsI RAATTY 2 cut(s) 515, 563
AcyI GRCGYC 1 cut(s) 182
AfaI GTAC 1 cut(s) 531
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 1 cut(s) 521
AluBI AGCT 1 cut(s) 490
AluI AGCT 1 cut(s) 490
Alw26I GTCTC 2 cut(s) 41, 75
AlwI GGATC 1 cut(s) 256
Ama87I CYCGRG 1 cut(s) 346
Aor13HI TCCGGA 1 cut(s) 43
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 457
ApoI RAATTY 2 cut(s) 515, 563
AsuHPI GGTGA 1 cut(s) 560
AvaI CYCGRG 1 cut(s) 346
AxyI CCTNAGG 1 cut(s) 534
BarI GAAGNNNNNNTAC 2 cut(s) 513, 545
BbsI GAAGAC 2 cut(s) 247, 295
BbvI GCAGC 1 cut(s) 444
BccI CCATC 1 cut(s) 100
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 41, 75
BglII AGATCT 2 cut(s) 167, 308
BisI GCNGC 2 cut(s) 455, 458
BlsI GCNGC 2 cut(s) 456, 459
BmeT110I CYCGRG 1 cut(s) 346
BpiI GAAGAC 2 cut(s) 247, 295
BsaHI GRCGYC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 149, 261
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse21I CCTNAGG 1 cut(s) 534
BseAI TCCGGA 1 cut(s) 43
BseDI CCNNGG 2 cut(s) 149, 261
BseGI GGATG 2 cut(s) 132, 402
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 525
BseRI GAGGAG 3 cut(s) 91, 463, 551
BseXI GCAGC 1 cut(s) 444
BshFI GGCC 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 346
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 2 cut(s) 41, 75
BsnI GGCC 1 cut(s) 235
BsoBI CYCGRG 1 cut(s) 346
Bsp13I TCCGGA 1 cut(s) 43
Bsp143I GATC 4 cut(s) 162, 167, 248, 308
BspACI CCGC 2 cut(s) 216, 455
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 526
BspEI TCCGGA 1 cut(s) 43
BspPI GGATC 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 149, 261
BssMI GATC 4 cut(s) 162, 167, 248, 308
BssNI GRCGYC 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 261
Bst6I CTCTTC 3 cut(s) 68, 96, 439
BstACI GRCGYC 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 1 cut(s) 534
BstDSI CCRYGG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 132, 402
BstKTI GATC 4 cut(s) 165, 170, 251, 311
BstMAI GTCTC 2 cut(s) 41, 75
BstMBI GATC 4 cut(s) 162, 167, 248, 308
BstMWI GCNNNNNNNGC 3 cut(s) 327, 423, 466
BstNSI RCATGY 1 cut(s) 469
BstV1I GCAGC 1 cut(s) 444
BstV2I GAAGAC 2 cut(s) 247, 295
BstX2I RGATCY 2 cut(s) 167, 308
BstYI RGATCY 2 cut(s) 167, 308
Bsu36I CCTNAGG 1 cut(s) 534
BsuRI GGCC 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 149
BtgZI GCGATG 2 cut(s) 33, 83
BtsCI GGATG 2 cut(s) 132, 402
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 2 cut(s) 197, 508
Cac8I GCNNGC 1 cut(s) 467
Csp6I GTAC 1 cut(s) 530
CviAII CATG 1 cut(s) 466
CviJI RGCY 7 cut(s) 111, 147, 155, 235, 267, 454, 490
CviKI_1 RGCY 7 cut(s) 111, 147, 155, 235, 267, 454, 490
CviQI GTAC 1 cut(s) 530
DdeI CTNAG 1 cut(s) 534
DpnI GATC 4 cut(s) 164, 169, 250, 310
DpnII GATC 4 cut(s) 162, 167, 248, 308
EaeI YGGCCR 1 cut(s) 233
Eam1104I CTCTTC 3 cut(s) 68, 96, 439
EarI CTCTTC 3 cut(s) 68, 96, 439
Eco130I CCWWGG 1 cut(s) 261
Eco81I CCTNAGG 1 cut(s) 534
Eco88I CYCGRG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 1 cut(s) 469
FaiI YATR 6 cut(s) 141, 161, 179, 206, 467, 558
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 1 cut(s) 465
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 455, 458
FokI GGATG 2 cut(s) 139, 409
Fsp4HI GCNGC 2 cut(s) 455, 458
GluI GCNGC 2 cut(s) 455, 458
HaeIII GGCC 1 cut(s) 235
HapII CCGG 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 1 cut(s) 469
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HinfI GANTC 3 cut(s) 40, 355, 479
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 6 cut(s) 167, 360, 372, 478, 484, 512
Hpy188III TCNNGA 3 cut(s) 44, 306, 346
Hpy8I GTNNAC 1 cut(s) 210
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 116
HpyCH4IV ACGT 2 cut(s) 182, 389
HpyCH4V TGCA 5 cut(s) 257, 330, 380, 465, 501
HpyF10VI GCNNNNNNNGC 3 cut(s) 327, 423, 466
HpyF3I CTNAG 1 cut(s) 534
HpySE526I ACGT 2 cut(s) 182, 389
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 1 cut(s) 469
Kpn2I TCCGGA 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 4 cut(s) 162, 167, 248, 308
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 4 cut(s) 57, 82, 415, 546
Lsp1109I GCAGC 1 cut(s) 444
MaeII ACGT 2 cut(s) 182, 389
MalI GATC 4 cut(s) 164, 169, 250, 310
MboI GATC 4 cut(s) 162, 167, 248, 308
MboII GAAGA 7 cut(s) 85, 113, 252, 297, 300, 447, 456
MflI RGATCY 2 cut(s) 167, 308
MluCI AATT 4 cut(s) 315, 363, 515, 563
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 3 cut(s) 15, 348, 501
MnlI CCTC 9 cut(s) 69, 85, 239, 342, 393, 440, 481, 484, 529
MroI TCCGGA 1 cut(s) 43
MspA1I CMGCKG 1 cut(s) 457
MspI CCGG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 327, 423, 466
NdeII GATC 4 cut(s) 162, 167, 248, 308
NlaIII CATG 1 cut(s) 469
NmeAIII GCCGAG 1 cut(s) 211
NspI RCATGY 1 cut(s) 469
PaeI GCATGC 1 cut(s) 469
PaeR7I CTCGAG 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 380
PfeI GAWTC 2 cut(s) 40, 355
PflFI GACNNNGTC 1 cut(s) 205
PkrI GCNGC 2 cut(s) 456, 459
PleI GAGTC 1 cut(s) 473
PpsI GAGTC 1 cut(s) 473
Psp1406I AACGTT 1 cut(s) 389
PsuI RGATCY 2 cut(s) 167, 308
PsyI GACNNNGTC 1 cut(s) 205
RsaI GTAC 1 cut(s) 531
RsaNI GTAC 1 cut(s) 530
SatI GCNGC 2 cut(s) 455, 458
Sau3AI GATC 4 cut(s) 162, 167, 248, 308
SchI GAGTC 1 cut(s) 473
SetI ASST 6 cut(s) 96, 185, 224, 392, 492, 535
Sfr274I CTCGAG 1 cut(s) 346
SlaI CTCGAG 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
SphI GCATGC 1 cut(s) 469
Sse9I AATT 4 cut(s) 315, 363, 515, 563
SsiI CCGC 2 cut(s) 216, 455
StyI CCWWGG 1 cut(s) 261
TaiI ACGT 2 cut(s) 185, 392
TaqI TCGA 2 cut(s) 90, 347
TasI AATT 4 cut(s) 315, 363, 515, 563
TauI GCSGC 1 cut(s) 457
TfiI GAWTC 2 cut(s) 40, 355
TscAI CASTG 2 cut(s) 204, 508
TseI GCWGC 1 cut(s) 457
TspDTI ATGAA 3 cut(s) 49, 86, 143
TspRI CASTG 2 cut(s) 204, 508
Tth111I GACNNNGTC 1 cut(s) 205
XapI RAATTY 2 cut(s) 515, 563
XceI RCATGY 1 cut(s) 469
XhoI CTCGAG 1 cut(s) 346
ZraI GACGTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.