Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004823

Physical Location & Seq

Genomic Coordinates Forward (+)

11940639 .. 11941028

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1127500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTTCGGACCCAAGCCTAGGGATTGGAGCATCAAGATCAATCGGAATGAGAAGTGGCTGGAGATTTTGACGGCGGTGGCGAGCGCCGCAAAGAACACGATAATGGTGCAGGATTTCAGCGACGAGTTCGAGAAGCTTGAGAAGCCAAAGACGACAGAGTTTATAGCAGCGATGAAGAGGTGGGGTTTAGACCCAAAGGAGAAGACGACATTTCTGGTGACAGAGAAAAGAGAGTTGAGAGAGCGAGAGGAGAAAGAGAGGGTGGGTGGTGGAGGAAGATTGGGGGGAAGGGTGGGAAGGATTTCTGGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022626 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

105

Amino Acids

11.97

Weight (kDa)

9.69

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L4	PF00573	1 - 76	2.1e-11	Ribosomal protein L4/L1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07320 AT1G07320 AT1G07320 AT1G07320
fragaria_vesca	FvH4_3g38221 FvH4_3g38221 FvH4_3g38221
malus_domestica	MD03G1073800.v1.1 MD08G1127500.v1.1 MD11G1079800.v1.1 MD11G1080100.v1.1
prunus_persica	Prupe.6G060600_v2.0.a1
pyrus_communis	pycom11g06750
rosa_chinensis	RchiOBHm_Chr3g0486041 RchiOBHm_Chr5g0068671 RchiOBHm_Chr5g0068721 RchiOBHm_Chr7g0215191
rosa_laevigata	RLG00000014184 RLG00000036005
rosa_multiflora	Rmu_sc0000376.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012100
rosa_rugosa	Rorug05G0392600
rosa_samantha	Rh5AG450100 Rh5BG468500 Rh5CG490600 Rh5CG490700 Rh5DG481900 Rh5DG482000
rosa_wichuraiana	Rw0G009870 Rw5G042010 Rw5G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	74, 87
AfiI	CCNNNNNNNGG	1 cut(s)	18
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	301
AspA2I	CCTAGG	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	8
AvrII	CCTAGG	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	87
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BfaI	CTAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	2 cut(s)	87, 168
BlnI	CCTAGG	1 cut(s)	17
BlsI	GCNGC	2 cut(s)	88, 169
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	10
BmsI	GCATC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	2 cut(s)	74, 87
BspLI	GGNNCC	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 142
BstV1I	GCAGC	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	209
BtgZI	GCGATG	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	8
CviJI	RGCY	4 cut(s)	16, 58, 136, 145
CviKI_1	RGCY	4 cut(s)	16, 58, 136, 145
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
FaiI	YATR	1 cut(s)	164
Fnu4HI	GCNGC	2 cut(s)	87, 168
Fsp4HI	GCNGC	2 cut(s)	87, 168
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	87, 168
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	87
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	134
HphI	GGTGA	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	8, 45
Hpy188III	TCNNGA	2 cut(s)	34, 130
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	282, 291
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 142
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	4 cut(s)	44, 95, 200, 291
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	3 cut(s)	187, 214, 288
MnlI	CCTC	4 cut(s)	171, 241, 252, 266
MroXI	GAANNNNTTC	1 cut(s)	301
MslI	CAYNNNNRTG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	86, 142
NdeII	GATC	1 cut(s)	36
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	88, 169
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	101
SatI	GCNGC	2 cut(s)	87, 168
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	8
SetI	ASST	2 cut(s)	138, 182
SfaNI	GCATC	1 cut(s)	39
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SsiI	CCGC	2 cut(s)	74, 87
SspMI	CTAG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	17
TaqI	TCGA	1 cut(s)	129
TauI	GCSGC	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	8
XmaJI	CCTAGG	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.