Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004823

Physical Location & Seq

Genomic Coordinates Forward (+)

4195488 .. 4197976

Gene Structure 2489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G060600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCGGCCTCTGCAACGCCTCTATCTCTCTCCTTCTTCACCTCCTCAATTTTCCTCACTTCCTCTTCTCACAAAACCCTCTCAACCCTCATACCCAACAATTCTTTCAAAACCCCCAAACCCCTCACCATCTCCTCCGAGCTCGCCACCCTCCCCGTCCTCTCCTTCACCGGCGACAAGGTTGGCGAGACCTTCCTCGACCTGAAAGCCGCCCTCCCCGACACCGCACGTGCCGTCGTCCACCGCGCCATCATCACCGACCTCCAGAACAAGCGCCGCGGCACCGCTTCCACGCTCACACGCGCCGAGGTCCGCGGAGGAGGCCGGAAACCCTACCCGCAGAAGAAAACGGGTCGGGCTCGCCAGGGGTCGACCAGGACGCCGCTCCGGCCCGGCGGAGGCGTCGTTTTCGGACCCAAGCCCAGGGATTGGAGCATCAAAATCAACCGCAAGGAGAAGAGGCTCGCGATTTCGACGGCGGTAGCGAGCGCGGCGGAGAACACGATCGTGGTTGAGGATTTCAGCGACGAGTTCGAGAAGCCGAAGACGAAGGAGTTCATTGCGGCGATGAAGAGGTGGGGATTGGACCCGAACGAGAAGACGACCTTTTTGATGAGGGAGGTCGCGGACAATGTGAGGCTTTCGAGTAGAAATATTGGGACTTTGAAGATGTTGACTCCGAGGACTTTGAATTTGTTTGATATTTTGAATGCGGATAAATTGATTCTGACGCCAGAGATTGTGGATTATCTGAATGCGAGATATGGGTTGAATTATGAGGGCGACGATGAGGACGAAGAAGGTGCAGAGGAACAAGATGAAGAAGAAGGAGAAGGAGGAAGTGAAGTTCAAGGAGCTGTGTCAGAGGAGAGTTCTGATGCAGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022626 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

297

Amino Acids

32.37

Weight (kDa)

5.72

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07320 AT1G07320 AT1G07320 AT1G07320
fragaria_vesca	FvH4_3g38221 FvH4_3g38221 FvH4_3g38221
malus_domestica	MD03G1073800.v1.1 MD08G1127500.v1.1 MD11G1079800.v1.1 MD11G1080100.v1.1
prunus_persica	Prupe.6G060600_v2.0.a1
pyrus_communis	pycom11g06750
rosa_chinensis	RchiOBHm_Chr3g0486041 RchiOBHm_Chr5g0068671 RchiOBHm_Chr5g0068721 RchiOBHm_Chr7g0215191
rosa_laevigata	RLG00000014184 RLG00000036005
rosa_multiflora	Rmu_sc0000376.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012100
rosa_rugosa	Rorug05G0392600
rosa_samantha	Rh5AG450100 Rh5BG468500 Rh5CG490600 Rh5CG490700 Rh5DG481900 Rh5DG482000
rosa_wichuraiana	Rw0G009870 Rw5G042010 Rw5G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	281
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccBSI	CCGCTC	1 cut(s)	385
AccI	GTMKAC	1 cut(s)	371
AccII	CGCG	7 cut(s)	246, 279, 303, 315, 467, 491, 626
AcsI	RAATTY	1 cut(s)	691
AcvI	CACGTG	1 cut(s)	230
AcyI	GRCGYC	3 cut(s)	380, 402, 731
AfiI	CCNNNNNNNGG	3 cut(s)	398, 423, 429
AgsI	TTSAA	6 cut(s)	109, 667, 691, 709, 772, 851
AjnI	CCWGG	3 cut(s)	363, 374, 422
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AleI	CACNNNNGTG	1 cut(s)	506
AloI	GAACNNNNNNTCC	2 cut(s)	831, 863
AluBI	AGCT	2 cut(s)	142, 857
AluI	AGCT	2 cut(s)	142, 857
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	182
AoxI	GGCC	3 cut(s)	6, 322, 389
ApeKI	GCWGC	1 cut(s)	881
ApoI	RAATTY	1 cut(s)	691
ArsI	GACNNNNNNTTYG	4 cut(s)	592, 624, 676, 708
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	4 cut(s)	248, 276, 305, 491
AspS9I	GGNCC	4 cut(s)	310, 390, 413, 586
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	4 cut(s)	31, 118, 160, 247
AvaII	GGWCC	3 cut(s)	310, 413, 586
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	2 cut(s)	144, 361
BbrPI	CACGTG	1 cut(s)	230
BbsI	GAAGAC	2 cut(s)	551, 605
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	2 cut(s)	137, 257
BceAI	ACGGC	2 cut(s)	218, 492
BcgI	CGANNNNNNTGC	2 cut(s)	785, 819
BciT130I	CCWGG	3 cut(s)	365, 376, 424
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	277
BglI	GCCNNNNNGGC	1 cut(s)	388
BisI	GCNGC	8 cut(s)	6, 210, 277, 280, 383, 492, 564, 882
BlsI	GCNGC	8 cut(s)	7, 211, 278, 281, 384, 493, 565, 883
Bme1390I	CCNGG	4 cut(s)	365, 376, 393, 424
Bme18I	GGWCC	3 cut(s)	310, 413, 586
BmgT120I	GGNCC	4 cut(s)	310, 390, 413, 586
BmiI	GGNNCC	3 cut(s)	283, 415, 588
BmrFI	CCNGG	4 cut(s)	365, 376, 393, 424
BmsI	GCATC	2 cut(s)	444, 868
BpiI	GAAGAC	2 cut(s)	551, 605
BpmI	CTGGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	230
BsaHI	GRCGYC	3 cut(s)	380, 402, 731
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	7 cut(s)	277, 306, 313, 364, 422, 423, 680
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 423, 429
Bse118I	RCCGGY	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	3 cut(s)	365, 376, 424
BseDI	CCNNGG	7 cut(s)	277, 306, 313, 364, 422, 423, 680
BseLI	CCNNNNNNNGG	3 cut(s)	398, 423, 429
BseMI	GCAATG	1 cut(s)	558
BseRI	GAGGAG	4 cut(s)	34, 124, 333, 881
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	7 cut(s)	246, 279, 303, 315, 467, 491, 626
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	3 cut(s)	8, 324, 391
BshNI	GGYRCC	1 cut(s)	281
BsiEI	CGRYCG	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	4 cut(s)	171, 325, 388, 393
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	3 cut(s)	398, 423, 429
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	673
BsmI	GAATGC	2 cut(s)	715, 760
BsnI	GGCC	3 cut(s)	8, 324, 391
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	144, 361
Bsp143I	GATC	1 cut(s)	504
Bsp68I	TCGCGA	1 cut(s)	467
BspANI	GGCC	3 cut(s)	8, 324, 391
BspFNI	CGCG	7 cut(s)	246, 279, 303, 315, 467, 491, 626
BspLI	GGNNCC	3 cut(s)	283, 415, 588
BspT107I	GGYRCC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	7 cut(s)	277, 306, 313, 364, 422, 423, 680
BssMI	GATC	1 cut(s)	504
BssNI	GRCGYC	3 cut(s)	380, 402, 731
Bst2UI	CCWGG	3 cut(s)	365, 376, 424
Bst6I	CTCTTC	3 cut(s)	70, 452, 566
BstACI	GRCGYC	3 cut(s)	380, 402, 731
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	4 cut(s)	144, 361, 465, 487
BstDSI	CCRYGG	2 cut(s)	277, 313
BstFNI	CGCG	7 cut(s)	246, 279, 303, 315, 467, 491, 626
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	4 cut(s)	248, 276, 305, 491
BstKTI	GATC	1 cut(s)	507
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	504
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 321, 388, 491
BstNI	CCWGG	3 cut(s)	365, 376, 424
BstSCI	CCNGG	4 cut(s)	363, 374, 391, 422
BstUI	CGCG	7 cut(s)	246, 279, 303, 315, 467, 491, 626
BstV2I	GAAGAC	2 cut(s)	551, 605
BsuRI	GGCC	3 cut(s)	8, 324, 391
BtgI	CCRYGG	2 cut(s)	277, 313
BtgZI	GCGATG	1 cut(s)	581
BtuMI	TCGCGA	1 cut(s)	467
Cac8I	GCNNGC	4 cut(s)	144, 361, 465, 487
CfoI	GCGC	4 cut(s)	248, 276, 305, 491
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	4 cut(s)	310, 390, 413, 586
Cfr42I	CCGCGG	2 cut(s)	280, 316
CseI	GACGC	3 cut(s)	388, 391, 739
DpnI	GATC	1 cut(s)	506
DpnII	GATC	1 cut(s)	504
Eam1104I	CTCTTC	3 cut(s)	70, 452, 566
EarI	CTCTTC	3 cut(s)	70, 452, 566
EciI	GGCGGA	2 cut(s)	411, 509
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	144, 361
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	3 cut(s)	310, 413, 586
Eco53kI	GAGCTC	1 cut(s)	142
Eco72I	CACGTG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	142
EcoRII	CCWGG	3 cut(s)	363, 374, 422
EcoT38I	GRGCYC	2 cut(s)	144, 361
FaiI	YATR	3 cut(s)	92, 765, 777
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FaqI	GGGAC	1 cut(s)	673
FauI	CCCGC	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	8 cut(s)	6, 210, 277, 280, 383, 492, 564, 882
FriOI	GRGCYC	2 cut(s)	144, 361
Fsp4HI	GCNGC	8 cut(s)	6, 210, 277, 280, 383, 492, 564, 882
GlaI	GCGC	4 cut(s)	247, 275, 304, 490
GluI	GCNGC	8 cut(s)	6, 210, 277, 280, 383, 492, 564, 882
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	1 cut(s)	277
HaeIII	GGCC	3 cut(s)	8, 324, 391
HapII	CCGG	4 cut(s)	171, 325, 388, 393
HgaI	GACGC	3 cut(s)	388, 391, 739
HhaI	GCGC	4 cut(s)	248, 276, 305, 491
Hin1I	GRCGYC	3 cut(s)	380, 402, 731
Hin6I	GCGC	4 cut(s)	246, 274, 303, 489
HinP1I	GCGC	4 cut(s)	246, 274, 303, 489
HincII	GTYRAC	2 cut(s)	372, 675
HindII	GTYRAC	2 cut(s)	372, 675
HinfI	GANTC	2 cut(s)	676, 724
HpaII	CCGG	4 cut(s)	171, 325, 388, 393
HphI	GGTGA	4 cut(s)	31, 118, 160, 247
Hpy166II	GTNNAC	3 cut(s)	241, 372, 675
Hpy188I	TCNGA	7 cut(s)	139, 413, 681, 729, 753, 865, 877
Hpy188III	TCNNGA	3 cut(s)	265, 466, 535
Hpy8I	GTNNAC	3 cut(s)	241, 372, 675
Hpy99I	CGWCG	5 cut(s)	239, 407, 478, 530, 788
HpyAV	CCTTC	7 cut(s)	43, 175, 202, 544, 794, 821, 827
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	3 cut(s)	14, 806, 881
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 321, 388, 491
HpySE526I	ACGT	1 cut(s)	229
Hsp92I	GRCGYC	3 cut(s)	380, 402, 731
HspAI	GCGC	4 cut(s)	246, 274, 303, 489
KspI	CCGCGG	2 cut(s)	280, 316
Kzo9I	GATC	1 cut(s)	504
LmnI	GCTCC	3 cut(s)	390, 432, 854
LweI	GCATC	2 cut(s)	444, 868
MaeII	ACGT	1 cut(s)	229
MalI	GATC	1 cut(s)	506
MbiI	CCGCTC	1 cut(s)	385
MboI	GATC	1 cut(s)	504
MhlI	GDGCHC	2 cut(s)	144, 361
MluCI	AATT	5 cut(s)	48, 100, 691, 719, 772
MlyI	GAGTC	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	554
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	2 cut(s)	279, 315
MspI	CCGG	4 cut(s)	171, 325, 388, 393
MspR9I	CCNGG	4 cut(s)	365, 376, 393, 424
Mva1269I	GAATGC	2 cut(s)	715, 760
MvaI	CCWGG	3 cut(s)	365, 376, 424
MvnI	CGCG	7 cut(s)	246, 279, 303, 315, 467, 491, 626
MwoI	GCNNNNNNNGC	4 cut(s)	11, 321, 388, 491
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	1 cut(s)	504
NlaIV	GGNNCC	3 cut(s)	283, 415, 588
NmeAIII	GCCGAG	1 cut(s)	331
NruI	TCGCGA	1 cut(s)	467
OliI	CACNNNNGTG	1 cut(s)	506
PasI	CCCWGGG	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	2 cut(s)	482, 792
PctI	GAATGC	2 cut(s)	715, 760
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	724
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	8 cut(s)	7, 211, 278, 281, 384, 493, 565, 883
Ple19I	CGATCG	1 cut(s)	507
PleI	GAGTC	1 cut(s)	670
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	670
Ppu21I	YACGTR	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	3 cut(s)	363, 374, 422
PspCI	CACGTG	1 cut(s)	230
PspGI	CCWGG	3 cut(s)	363, 374, 422
PspN4I	GGNNCC	3 cut(s)	283, 415, 588
PspPI	GGNCC	4 cut(s)	310, 390, 413, 586
PvuI	CGATCG	1 cut(s)	507
RruI	TCGCGA	1 cut(s)	467
RseI	CAYNNNNRTG	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	144
SacII	CCGCGG	2 cut(s)	280, 316
SalI	GTCGAC	1 cut(s)	370
SatI	GCNGC	8 cut(s)	6, 210, 277, 280, 383, 492, 564, 882
Sau3AI	GATC	1 cut(s)	504
Sau96I	GGNCC	4 cut(s)	310, 390, 413, 586
SchI	GAGTC	1 cut(s)	670
ScrFI	CCNGG	4 cut(s)	365, 376, 393, 424
SduI	GDGCHC	2 cut(s)	144, 361
SfaNI	GCATC	2 cut(s)	444, 868
Sfr303I	CCGCGG	2 cut(s)	280, 316
SgrAI	CRCCGGYG	1 cut(s)	170
SgrBI	CCGCGG	2 cut(s)	280, 316
SinI	GGWCC	3 cut(s)	310, 413, 586
SmiMI	CAYNNNNRTG	1 cut(s)	506
Sse9I	AATT	5 cut(s)	48, 100, 691, 719, 772
SspI	AATATT	1 cut(s)	655
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	4 cut(s)	363, 374, 391, 422
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	5 cut(s)	198, 371, 473, 534, 644
TasI	AATT	5 cut(s)	48, 100, 691, 719, 772
TauI	GCSGC	7 cut(s)	8, 212, 279, 282, 385, 494, 566
TfiI	GAWTC	1 cut(s)	724
TseI	GCWGC	1 cut(s)	881
TspDTI	ATGAA	3 cut(s)	547, 584, 834
Van91I	CCANNNNNTGG	1 cut(s)	429
VpaK11BI	GGWCC	3 cut(s)	310, 413, 586
XapI	RAATTY	1 cut(s)	691
XmiI	GTMKAC	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.