Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004823

Physical Location & Seq

Genomic Coordinates Reverse (-)

6834777 .. 6835697

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1079800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAAGAGGTGGGGTTCGGACCCGAAGGAGAAGACGACGTTTCTGGTGACGGAGGTGGCGAACAATGTGAGGCTTTCGAGCAGAAATATTGGGACTTTGAAGACGCTGACGCGGAGGACTTTGAATTTGTTTGATATTTTGAATGCGGATAAGCTGATCATGACGCCGGAGATTGTGGATTATCTGAATGCAAGGTACGGGGTTGATTACGACGGCGAGACAGAGGACGAGGAGGAGGAGGAGGAAGAAGAAGGAGGAGTTGAAGTTGAAGGATGGGACGGCAGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022626 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

97

Amino Acids

11.0

Weight (kDa)

4.36

Isoelectric Point (pI)

67.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L4	PF00573	9 - 64	6e-09	Ribosomal protein L4/L1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07320 AT1G07320 AT1G07320 AT1G07320
fragaria_vesca	FvH4_3g38221 FvH4_3g38221 FvH4_3g38221
malus_domestica	MD03G1073800.v1.1 MD08G1127500.v1.1 MD11G1079800.v1.1 MD11G1080100.v1.1
prunus_persica	Prupe.6G060600_v2.0.a1
pyrus_communis	pycom11g06750
rosa_chinensis	RchiOBHm_Chr3g0486041 RchiOBHm_Chr5g0068671 RchiOBHm_Chr5g0068721 RchiOBHm_Chr7g0215191
rosa_laevigata	RLG00000014184 RLG00000036005
rosa_multiflora	Rmu_sc0000376.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012100
rosa_rugosa	Rorug05G0392600
rosa_samantha	Rh5AG450100 Rh5BG468500 Rh5CG490600 Rh5CG490700 Rh5DG481900 Rh5DG482000
rosa_wichuraiana	Rw0G009870 Rw5G042010 Rw5G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	112
AciI	CCGC	2 cut(s)	112, 146
AcsI	RAATTY	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	164
AfaI	GTAC	1 cut(s)	197
AgsI	TTSAA	5 cut(s)	100, 124, 142, 263, 269
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	124
ArsI	GACNNNNNNTTYG	2 cut(s)	109, 141
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	19
BbsI	GAAGAC	2 cut(s)	38, 107
BccI	CCATC	1 cut(s)	267
BceAI	ACGGC	1 cut(s)	229
BclI	TGATCA	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	212
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	21
BpiI	GAAGAC	2 cut(s)	38, 107
BsaHI	GRCGYC	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
BseGI	GGATG	1 cut(s)	278
BseRI	GAGGAG	5 cut(s)	245, 248, 251, 254, 270
Bsh1236I	CGCG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	106
BsmI	GAATGC	2 cut(s)	148, 193
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	112, 146
BspFNI	CGCG	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	21
BssMI	GATC	1 cut(s)	156
BssNI	GRCGYC	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	278
BstFNI	CGCG	1 cut(s)	112
BstKTI	GATC	1 cut(s)	159
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	156
BstUI	CGCG	1 cut(s)	112
BstV2I	GAAGAC	2 cut(s)	38, 107
BtsCI	GGATG	1 cut(s)	278
CciI	TCATGA	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	19
CseI	GACGC	3 cut(s)	112, 118, 172
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	2 cut(s)	73, 154
CviKI_1	RGCY	2 cut(s)	73, 154
CviQI	GTAC	1 cut(s)	196
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	19
FaeI	CATG	1 cut(s)	163
FaiI	YATR	1 cut(s)	161
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	283
GluI	GCNGC	1 cut(s)	283
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	3 cut(s)	112, 118, 172
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	163
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	19, 186
Hpy188III	TCNNGA	1 cut(s)	160
Hpy99I	CGWCG	2 cut(s)	40, 215
HpyAV	CCTTC	3 cut(s)	19, 245, 263
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	156
LpnPI	CCDG	2 cut(s)	29, 180
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	5 cut(s)	16, 43, 112, 257, 260
MluCI	AATT	1 cut(s)	124
MspI	CCGG	1 cut(s)	167
Mva1269I	GAATGC	2 cut(s)	148, 193
MvnI	CGCG	1 cut(s)	112
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	46
PagI	TCATGA	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PctI	GAATGC	2 cut(s)	148, 193
PkrI	GCNGC	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	19
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	1 cut(s)	19
SetI	ASST	5 cut(s)	11, 41, 57, 156, 197
SinI	GGWCC	1 cut(s)	19
Sse9I	AATT	1 cut(s)	124
SsiI	CCGC	2 cut(s)	112, 146
SspI	AATATT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	282
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.