Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000376.1

Orthogroup ID

OG0004823

Physical Location & Seq

Genomic Coordinates Reverse (-)

109483 .. 111123

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000376.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atggcgacctcctcatcactctccttcttcacctcctcaatcttcctcacttcctcttcccacaaacccctctcccccaccctcctcagacccaactccctcaaatcccccaaacccctaaccctaaccgccgagctcgccaccctccccgtcctctccttcaccggcgacaaggtcggcgagaccttcctcgacctcaagtccgccctccccgacaccgcccgcgccgtcgtccaccgcgccgttatccacgacctccagaacaagcgccgcggcaccgcctccaccctcacccgcggcgaggtccgaggcggaggcagaaagccctacccgcagaagaagaccggtcgggccaggcagggctcgacccggaccccgctccgacccggcggaggagtcgtgttcgggcctaagcccagggactggagcatcaaaattaaccgcaaggagaagcggctggcgatttcgacggcggtggcgagcgcggcggagaacacgattgtggtggaggatttcagcgatgagtttgagaggttggagaagccgaagacgacggagttcattgccgcgatgaagaggtgggggcttgaccccaaggagaagacgaccttctttatgctggaggttgcggataaggtgaagctttcgagtaggaatattgggactttgaagatgttgacccccaggacgctgaatctgtttgatattttgaatgctgataagttgattctcacgccggagactgtggactatttgaatggaaggtatggggttgatttcgaaggcgagaccgaggatgaggatgaagaagatgcaggggaagaagaagaagggagtgaaggagctgtggagaatgagaattctgatgcagcagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022626 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

292

Amino Acids

32.09

Weight (kDa)

6.09

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07320 AT1G07320 AT1G07320 AT1G07320
fragaria_vesca	FvH4_3g38221 FvH4_3g38221 FvH4_3g38221
malus_domestica	MD03G1073800.v1.1 MD08G1127500.v1.1 MD11G1079800.v1.1 MD11G1080100.v1.1
prunus_persica	Prupe.6G060600_v2.0.a1
pyrus_communis	pycom11g06750
rosa_chinensis	RchiOBHm_Chr3g0486041 RchiOBHm_Chr5g0068671 RchiOBHm_Chr5g0068721 RchiOBHm_Chr7g0215191
rosa_laevigata	RLG00000014184 RLG00000036005
rosa_multiflora	Rmu_sc0000376.1_g000024
rosa_roxburghii	Rroxscaffold_1G00012100
rosa_rugosa	Rorug05G0392600
rosa_samantha	Rh5AG450100 Rh5BG468500 Rh5CG490600 Rh5CG490700 Rh5DG481900 Rh5DG482000
rosa_wichuraiana	Rw0G009870 Rw5G042010 Rw5G042030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	423
AccBSI	CCGCTC	1 cut(s)	379
AccII	CGCG	6 cut(s)	225, 240, 273, 297, 485, 569
AcsI	RAATTY	1 cut(s)	859
AfiI	CCNNNNNNNGG	3 cut(s)	301, 392, 423
AgeI	ACCGGT	1 cut(s)	344
AgsI	TTSAA	3 cut(s)	670, 712, 757
AhdI	GACNNNNNGTC	1 cut(s)	199
AjnI	CCWGG	3 cut(s)	353, 416, 683
AleI	CACNNNNGTG	1 cut(s)	500
AluBI	AGCT	3 cut(s)	136, 643, 845
AluI	AGCT	3 cut(s)	136, 643, 845
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	3 cut(s)	176, 734, 782
AlwNI	CAGNNNCTG	1 cut(s)	423
AoxI	GGCC	2 cut(s)	351, 407
ApeKI	GCWGC	1 cut(s)	869
ApoI	RAATTY	1 cut(s)	859
AsiGI	ACCGGT	1 cut(s)	344
AspLEI	GCGC	4 cut(s)	227, 242, 270, 485
AspS9I	GGNCC	4 cut(s)	304, 351, 372, 407
AsuC2I	CCSGG	2 cut(s)	370, 387
AsuHPI	GGTGA	4 cut(s)	22, 154, 283, 649
AsuII	TTCGAA	1 cut(s)	780
AvaII	GGWCC	2 cut(s)	304, 372
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	2 cut(s)	138, 365
BbsI	GAAGAC	3 cut(s)	347, 554, 608
Bbv12I	GWGCWC	1 cut(s)	138
BceAI	ACGGC	3 cut(s)	212, 227, 486
BciT130I	CCWGG	3 cut(s)	355, 418, 685
BcnI	CCSGG	2 cut(s)	370, 387
BcoDI	GTCTC	3 cut(s)	176, 734, 782
BfoI	RGCGCY	1 cut(s)	271
BisI	GCNGC	7 cut(s)	271, 274, 298, 455, 486, 567, 870
BlsI	GCNGC	7 cut(s)	272, 275, 299, 456, 487, 568, 871
Bme1390I	CCNGG	5 cut(s)	355, 370, 387, 418, 685
Bme18I	GGWCC	2 cut(s)	304, 372
BmeRI	GACNNNNNGTC	1 cut(s)	199
BmgT120I	GGNCC	4 cut(s)	304, 351, 372, 407
BmiI	GGNNCC	2 cut(s)	277, 374
BmrFI	CCNGG	5 cut(s)	355, 370, 387, 418, 685
BmsI	GCATC	3 cut(s)	438, 802, 856
BpiI	GAAGAC	3 cut(s)	347, 554, 608
BpmI	CTGGAG	3 cut(s)	242, 445, 641
Bpu10I	CCTNAGC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	780
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	2 cut(s)	370, 387
BsaI	GGTCTC	2 cut(s)	176, 782
BsaJI	CCNNGG	8 cut(s)	271, 295, 307, 416, 417, 594, 683, 792
BsaWI	WCCGGW	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 392, 423
Bse118I	RCCGGY	2 cut(s)	164, 344
Bse1I	ACTGG	1 cut(s)	428
Bse3DI	GCAATG	1 cut(s)	561
BseBI	CCWGG	3 cut(s)	355, 418, 685
BseDI	CCNNGG	8 cut(s)	271, 295, 307, 416, 417, 594, 683, 792
BseGI	GGATG	2 cut(s)	802, 808
BseLI	CCNNNNNNNGG	3 cut(s)	301, 392, 423
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	3 cut(s)	25, 74, 408
Bsh1236I	CGCG	6 cut(s)	225, 240, 273, 297, 485, 569
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	2 cut(s)	353, 409
BshNI	GGYRCC	1 cut(s)	275
BshTI	ACCGGT	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	5 cut(s)	165, 345, 370, 387, 737
BslFI	GGGAC	2 cut(s)	434, 676
BslI	CCNNNNNNNGG	3 cut(s)	301, 392, 423
BsmAI	GTCTC	3 cut(s)	176, 734, 782
BsmFI	GGGAC	2 cut(s)	434, 676
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	2 cut(s)	353, 409
Bso31I	GGTCTC	2 cut(s)	176, 782
Bsp119I	TTCGAA	1 cut(s)	780
Bsp1286I	GDGCHC	2 cut(s)	138, 365
BspANI	GGCC	2 cut(s)	353, 409
BspCNI	CTCAG	1 cut(s)	99
BspFNI	CGCG	6 cut(s)	225, 240, 273, 297, 485, 569
BspLI	GGNNCC	2 cut(s)	277, 374
BspT104I	TTCGAA	1 cut(s)	780
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	2 cut(s)	176, 782
BsrBI	CCGCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	561
BsrFI	RCCGGY	2 cut(s)	164, 344
BsrI	ACTGG	1 cut(s)	428
BssAI	RCCGGY	2 cut(s)	164, 344
BssECI	CCNNGG	8 cut(s)	271, 295, 307, 416, 417, 594, 683, 792
BssT1I	CCWWGG	1 cut(s)	594
Bst2UI	CCWGG	3 cut(s)	355, 418, 685
Bst4CI	ACNGT	1 cut(s)	745
Bst6I	CTCTTC	2 cut(s)	61, 569
BstBI	TTCGAA	1 cut(s)	780
BstC8I	GCNNGC	4 cut(s)	138, 223, 459, 481
BstDEI	CTNAG	2 cut(s)	86, 411
BstDSI	CCRYGG	2 cut(s)	271, 295
BstF5I	GGATG	2 cut(s)	802, 808
BstFNI	CGCG	6 cut(s)	225, 240, 273, 297, 485, 569
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	4 cut(s)	227, 242, 270, 485
BstMAI	GTCTC	3 cut(s)	176, 734, 782
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 331, 485
BstNI	CCWGG	3 cut(s)	355, 418, 685
BstSCI	CCNGG	5 cut(s)	353, 368, 385, 416, 683
BstUI	CGCG	6 cut(s)	225, 240, 273, 297, 485, 569
BstV2I	GAAGAC	3 cut(s)	347, 554, 608
BsuRI	GGCC	2 cut(s)	353, 409
BtgI	CCRYGG	2 cut(s)	271, 295
BtgZI	GCGATG	2 cut(s)	534, 584
BtsCI	GGATG	2 cut(s)	802, 808
Cac8I	GCNNGC	4 cut(s)	138, 223, 459, 481
CaiI	CAGNNNCTG	1 cut(s)	423
CfoI	GCGC	4 cut(s)	227, 242, 270, 485
Cfr10I	RCCGGY	2 cut(s)	164, 344
Cfr13I	GGNCC	4 cut(s)	304, 351, 372, 407
Cfr42I	CCGCGG	2 cut(s)	274, 298
CseI	GACGC	1 cut(s)	697
CspAI	ACCGGT	1 cut(s)	344
DdeI	CTNAG	2 cut(s)	86, 411
DriI	GACNNNNNGTC	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	61, 569
Eam1105I	GACNNNNNGTC	1 cut(s)	199
EarI	CTCTTC	2 cut(s)	61, 569
EciI	GGCGGA	4 cut(s)	193, 327, 405, 503
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	2 cut(s)	138, 365
Eco31I	GGTCTC	2 cut(s)	176, 782
Eco47I	GGWCC	2 cut(s)	304, 372
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	859
EcoRII	CCWGG	3 cut(s)	353, 416, 683
EcoT14I	CCWWGG	1 cut(s)	594
EcoT38I	GRGCYC	2 cut(s)	138, 365
ErhI	CCWWGG	1 cut(s)	594
FaiI	YATR	2 cut(s)	617, 768
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FaqI	GGGAC	2 cut(s)	434, 676
FauI	CCCGC	4 cut(s)	230, 302, 339, 384
Fnu4HI	GCNGC	7 cut(s)	271, 274, 298, 455, 486, 567, 870
FokI	GGATG	2 cut(s)	809, 815
FriOI	GRGCYC	2 cut(s)	138, 365
Fsp4HI	GCNGC	7 cut(s)	271, 274, 298, 455, 486, 567, 870
GlaI	GCGC	4 cut(s)	226, 241, 269, 484
GluI	GCNGC	7 cut(s)	271, 274, 298, 455, 486, 567, 870
GsuI	CTGGAG	3 cut(s)	242, 445, 641
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	2 cut(s)	353, 409
HapII	CCGG	5 cut(s)	165, 345, 370, 387, 737
HgaI	GACGC	1 cut(s)	697
HhaI	GCGC	4 cut(s)	227, 242, 270, 485
Hin6I	GCGC	4 cut(s)	225, 240, 268, 483
HinP1I	GCGC	4 cut(s)	225, 240, 268, 483
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	3 cut(s)	396, 694, 727
HpaII	CCGG	5 cut(s)	165, 345, 370, 387, 737
HphI	GGTGA	4 cut(s)	22, 154, 283, 649
Hpy166II	GTNNAC	3 cut(s)	235, 678, 748
Hpy188I	TCNGA	4 cut(s)	89, 308, 383, 865
Hpy188III	TCNNGA	1 cut(s)	259
Hpy8I	GTNNAC	3 cut(s)	235, 678, 748
Hpy99I	CGWCG	3 cut(s)	233, 472, 556
HpyAV	CCTTC	8 cut(s)	34, 169, 196, 619, 756, 776, 824, 833
HpyCH4III	ACNGT	1 cut(s)	745
HpyCH4V	TGCA	2 cut(s)	815, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 331, 485
HpyF3I	CTNAG	2 cut(s)	86, 411
HspAI	GCGC	4 cut(s)	225, 240, 268, 483
KspI	CCGCGG	2 cut(s)	274, 298
LmnI	GCTCC	3 cut(s)	384, 426, 842
LweI	GCATC	3 cut(s)	438, 802, 856
MbiI	CCGCTC	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	138, 365
MluCI	AATT	2 cut(s)	435, 859
MlyI	GAGTC	1 cut(s)	405
MmeI	TCCRAC	2 cut(s)	406, 516
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	500
MspA1I	CMGCKG	2 cut(s)	273, 297
MspI	CCGG	5 cut(s)	165, 345, 370, 387, 737
MspR9I	CCNGG	5 cut(s)	355, 370, 387, 418, 685
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	3 cut(s)	355, 418, 685
MvnI	CGCG	6 cut(s)	225, 240, 273, 297, 485, 569
MwoI	GCNNNNNNNGC	3 cut(s)	137, 331, 485
NciI	CCSGG	2 cut(s)	370, 387
NlaIV	GGNNCC	2 cut(s)	277, 374
NmeAIII	GCCGAG	1 cut(s)	157
NspV	TTCGAA	1 cut(s)	780
OliI	CACNNNNGTG	1 cut(s)	500
PasI	CCCWGGG	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	476
PctI	GAATGC	1 cut(s)	718
PfeI	GAWTC	2 cut(s)	694, 727
PflFI	GACNNNGTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	423
PinAI	ACCGGT	1 cut(s)	344
PkrI	GCNGC	7 cut(s)	272, 275, 299, 456, 487, 568, 871
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	138
Psp6I	CCWGG	3 cut(s)	353, 416, 683
PspGI	CCWGG	3 cut(s)	353, 416, 683
PspN4I	GGNNCC	2 cut(s)	277, 374
PspPI	GGNCC	4 cut(s)	304, 351, 372, 407
PstNI	CAGNNNCTG	1 cut(s)	423
PsyI	GACNNNGTC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	138
SacII	CCGCGG	2 cut(s)	274, 298
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	7 cut(s)	271, 274, 298, 455, 486, 567, 870
Sau96I	GGNCC	4 cut(s)	304, 351, 372, 407
SchI	GAGTC	1 cut(s)	405
ScrFI	CCNGG	5 cut(s)	355, 370, 387, 418, 685
SduI	GDGCHC	2 cut(s)	138, 365
SfaNI	GCATC	3 cut(s)	438, 802, 856
Sfr303I	CCGCGG	2 cut(s)	274, 298
SfuI	TTCGAA	1 cut(s)	780
SgrAI	CRCCGGYG	1 cut(s)	164
SgrBI	CCGCGG	2 cut(s)	274, 298
SinI	GGWCC	2 cut(s)	304, 372
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	435, 859
SspI	AATATT	1 cut(s)	658
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	5 cut(s)	353, 368, 385, 416, 683
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	1 cut(s)	745
TaqI	TCGA	5 cut(s)	192, 365, 467, 647, 780
TaqII	GACCGA	1 cut(s)	806
TasI	AATT	2 cut(s)	435, 859
TauI	GCSGC	6 cut(s)	273, 276, 300, 457, 488, 569
TfiI	GAWTC	2 cut(s)	694, 727
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TseI	GCWGC	1 cut(s)	869
TspDTI	ATGAA	3 cut(s)	550, 587, 819
TspGWI	ACGGA	1 cut(s)	569
Tth111I	GACNNNGTC	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	423
VpaK11BI	GGWCC	2 cut(s)	304, 372
XapI	RAATTY	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.