Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005774

Physical Location & Seq

Genomic Coordinates Forward (+)

2535251 .. 2537932

Gene Structure 2682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGTCGGAAGCGAGGGAATCACCAGCAAACAATCCTGGCTTGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTGCTGGGGATGTCATTGCTGAAGAGGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCACAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGGGCACATTGGGGTTACCGTTGATGATGTGCACAAGGCATGCGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCAAACGATGGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGAGATCTTTGATCTCAAGACTATCGGAACTACTACCGTAAACGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0019904 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

185

Amino Acids

20.85

Weight (kDa)

5.14

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	29 - 171	2.6e-28	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	30 - 154	1.9e-07	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08110 AT1G08110 AT1G08110 AT1G08110
fragaria_vesca	FvH4_3g30960 FvH4_3g30960 FvH4_3g30960
malus_domestica	MD00G1032700.v1.1 MD11G1146100.v1.1
prunus_persica	Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1
pyrus_communis	pycom11g11910
rosa_chinensis	RchiOBHm_Chr5g0057511 RchiOBHm_Chr5g0057571
rosa_laevigata	RLG00000035161
rosa_multiflora	Rmu_sc0000508.1_g000002
rosa_roxburghii	Rroxscaffold_1G00022920
rosa_rugosa	Rorug05G0307800 Rorug05G0307900
rosa_samantha	Rh5AG376400 Rh5BG387200 Rh5CG410700 Rh5DG401400
rosa_wichuraiana	Rw5G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	455
AclWI	GGATC	6 cut(s)	110, 233, 311, 482, 495, 512
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	182
AcvI	CACGTG	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	200, 307
AfiI	CCNNNNNNNGG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	2 cut(s)	287, 419
AhdI	GACNNNNNGTC	1 cut(s)	267
AjnI	CCWGG	2 cut(s)	37, 204
AluBI	AGCT	2 cut(s)	230, 554
AluI	AGCT	2 cut(s)	230, 554
Alw21I	GWGCWC	1 cut(s)	399
Alw44I	GTGCAC	1 cut(s)	395
AlwI	GGATC	6 cut(s)	110, 233, 311, 482, 495, 512
ApaLI	GTGCAC	1 cut(s)	395
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	109
AxyI	CCTNAGG	1 cut(s)	114
BaeGI	GKGCMC	2 cut(s)	372, 399
BamHI	GGATCC	1 cut(s)	487
BauI	CACGAG	1 cut(s)	357
BbrPI	CACGTG	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	399
BccI	CCATC	2 cut(s)	449, 488
BciT130I	CCWGG	2 cut(s)	39, 206
BciVI	GTATCC	2 cut(s)	68, 211
BfaI	CTAG	1 cut(s)	120
BfuI	GTATCC	2 cut(s)	68, 211
BglII	AGATCT	1 cut(s)	510
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
Bme1390I	CCNGG	2 cut(s)	39, 206
Bme18I	GGWCC	1 cut(s)	109
BmeRI	GACNNNNNGTC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	111, 489
BmrFI	CCNGG	2 cut(s)	39, 206
BmrI	ACTGGG	1 cut(s)	310
BmuI	ACTGGG	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	2 cut(s)	305, 506
Bse21I	CCTNAGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	155
Bse8I	GATNNNNATC	1 cut(s)	509
BseBI	CCWGG	2 cut(s)	39, 206
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	1 cut(s)	155
BseMII	CTCAG	3 cut(s)	171, 312, 342
BseNI	ACTGG	2 cut(s)	305, 506
BseSI	GKGCMC	2 cut(s)	372, 399
BseYI	CCCAGC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	372, 399
Bsp143I	GATC	7 cut(s)	102, 238, 316, 487, 504, 510, 517
BspCNI	CTCAG	3 cut(s)	172, 313, 343
BspLI	GGNNCC	2 cut(s)	111, 489
BspPI	GGATC	6 cut(s)	110, 233, 311, 482, 495, 512
BsrDI	GCAATG	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	305, 506
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	7 cut(s)	102, 238, 316, 487, 504, 510, 517
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	39, 206
Bst4CI	ACNGT	3 cut(s)	256, 385, 544
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	4 cut(s)	114, 180, 321, 351
BstEII	GGTNACC	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	7 cut(s)	105, 241, 319, 490, 507, 513, 520
BstMBI	GATC	7 cut(s)	102, 238, 316, 487, 504, 510, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 166
BstNI	CCWGG	2 cut(s)	39, 206
BstNSI	RCATGY	1 cut(s)	408
BstPI	GGTNACC	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	37, 204
BstSLI	GKGCMC	2 cut(s)	372, 399
BstX2I	RGATCY	2 cut(s)	487, 510
BstYI	RGATCY	2 cut(s)	487, 510
Bsu36I	CCTNAGG	1 cut(s)	114
BsuI	GTATCC	2 cut(s)	68, 211
BtsCI	GGATG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	199, 306
CviAII	CATG	2 cut(s)	82, 405
CviQI	GTAC	2 cut(s)	199, 306
DdeI	CTNAG	4 cut(s)	114, 180, 321, 351
DpnI	GATC	7 cut(s)	104, 240, 318, 489, 506, 512, 519
DpnII	GATC	7 cut(s)	102, 238, 316, 487, 504, 510, 517
DraI	TTTAAA	1 cut(s)	328
DriI	GACNNNNNGTC	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	158
Eam1105I	GACNNNNNGTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	182
Eco72I	CACGTG	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	109
EcoO65I	GGTNACC	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	37, 204
FaeI	CATG	2 cut(s)	85, 408
FaiI	YATR	4 cut(s)	83, 95, 406, 473
FatI	CATG	2 cut(s)	81, 404
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	1 cut(s)	552
GsaI	CCCAGC	1 cut(s)	149
HapII	CCGG	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	85, 408
HincII	GTYRAC	2 cut(s)	48, 272
HindII	GTYRAC	2 cut(s)	48, 272
HinfI	GANTC	3 cut(s)	20, 52, 292
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	4 cut(s)	48, 272, 397, 547
Hpy188I	TCNGA	5 cut(s)	10, 102, 181, 352, 533
Hpy188III	TCNNGA	6 cut(s)	56, 125, 320, 491, 508, 523
Hpy8I	GTNNAC	4 cut(s)	48, 272, 397, 547
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	3 cut(s)	256, 385, 544
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	85, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 166
HpyF3I	CTNAG	4 cut(s)	114, 180, 321, 351
HpySE526I	ACGT	1 cut(s)	139
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	85, 408
Kzo9I	GATC	7 cut(s)	102, 238, 316, 487, 504, 510, 517
LmnI	GCTCC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	7 cut(s)	104, 240, 318, 489, 506, 512, 519
MboI	GATC	7 cut(s)	102, 238, 316, 487, 504, 510, 517
MboII	GAAGA	3 cut(s)	175, 431, 478
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	2 cut(s)	487, 510
MhlI	GDGCHC	2 cut(s)	372, 399
MluCI	AATT	4 cut(s)	188, 282, 287, 422
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	2 cut(s)	257, 266
MnlI	CCTC	5 cut(s)	9, 55, 159, 208, 366
MseI	TTAA	2 cut(s)	327, 483
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	39, 206
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	2 cut(s)	39, 206
MwoI	GCNNNNNNNGC	2 cut(s)	11, 166
NdeII	GATC	7 cut(s)	102, 238, 316, 487, 504, 510, 517
NlaIII	CATG	2 cut(s)	85, 408
NlaIV	GGNNCC	2 cut(s)	111, 489
NspI	RCATGY	1 cut(s)	408
PaeI	GCATGC	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	20, 52
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	1 cut(s)	286
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	286
Ppu21I	YACGTR	1 cut(s)	140
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	37, 204
PspCI	CACGTG	1 cut(s)	140
PspEI	GGTNACC	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	2 cut(s)	37, 204
PspN4I	GGNNCC	2 cut(s)	111, 489
PspPI	GGNCC	1 cut(s)	109
PspPPI	RGGWCCY	1 cut(s)	109
PsuI	RGATCY	2 cut(s)	487, 510
RsaI	GTAC	2 cut(s)	200, 307
RsaNI	GTAC	2 cut(s)	199, 306
SaqAI	TTAA	2 cut(s)	327, 483
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	7 cut(s)	102, 238, 316, 487, 504, 510, 517
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	2 cut(s)	39, 206
SduI	GDGCHC	2 cut(s)	372, 399
SetI	ASST	4 cut(s)	142, 232, 334, 556
SinI	GGWCC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SphI	GCATGC	1 cut(s)	408
Sse9I	AATT	4 cut(s)	188, 282, 287, 422
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	37, 204
TaaI	ACNGT	3 cut(s)	256, 385, 544
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	55, 507
TasI	AATT	4 cut(s)	188, 282, 287, 422
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	20, 52
Tru1I	TTAA	2 cut(s)	327, 483
Tru9I	TTAA	2 cut(s)	327, 483
TseI	GCWGC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	200, 469, 479
Van91I	CCANNNNNTGG	1 cut(s)	455
VneI	GTGCAC	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	408
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.