Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005774

Physical Location & Seq

Genomic Coordinates Forward (+)

36066827 .. 36068110

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0307900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGACACGACTGGTCGGCAAAACCAGAGGTGAACCCGAACTCGAAGACAGACGCAGAGGTCGCAGGTTTAATTATAATCATAATTGTATGTTCAAAAGCAAATCCGATCGGAGCCAAAGCTGTCGAGGTCTGCTTCTTATAAAGAGGGCCGTACCAGAAGCTGGCATCCCTCTTCAAAGGCGCAACTCTAATGCACGGAGAAACCACCGTTACCGTCTCAGCGTTCCCCGCCGGCGCCAAGACCGGGACGATGAGGATCCCTGGAAGAATATGAAACGCCCAGCAGCTGCTACGAGTGGCCCTAGCTTTTCAGAGTTGTTCGCCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0019904 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

109

Amino Acids

12.78

Weight (kDa)

11.41

Isoelectric Point (pI)

84.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08110 AT1G08110 AT1G08110 AT1G08110
fragaria_vesca	FvH4_3g30960 FvH4_3g30960 FvH4_3g30960
malus_domestica	MD00G1032700.v1.1 MD11G1146100.v1.1
prunus_persica	Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1
pyrus_communis	pycom11g11910
rosa_chinensis	RchiOBHm_Chr5g0057511 RchiOBHm_Chr5g0057571
rosa_laevigata	RLG00000035161
rosa_multiflora	Rmu_sc0000508.1_g000002
rosa_roxburghii	Rroxscaffold_1G00022920
rosa_rugosa	Rorug05G0307800 Rorug05G0307900
rosa_samantha	Rh5AG376400 Rh5BG387200 Rh5CG410700 Rh5DG401400
rosa_wichuraiana	Rw5G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	75, 140
AasI	GACNNNNNNGTC	1 cut(s)	57
Acc36I	ACCTGC	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	234
AccB7I	CCANNNNNTGG	1 cut(s)	161
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	2 cut(s)	251, 264
AcyI	GRCGYC	1 cut(s)	235
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	2 cut(s)	161, 244
AgsI	TTSAA	2 cut(s)	94, 176
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	4 cut(s)	120, 161, 287, 306
AluI	AGCT	4 cut(s)	120, 161, 287, 306
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	251, 264
AlwNI	CAGNNNCTG	2 cut(s)	161, 287
AoxI	GGCC	2 cut(s)	147, 298
ApeKI	GCWGC	2 cut(s)	284, 287
AspLEI	GCGC	2 cut(s)	183, 237
AspS9I	GGNCC	2 cut(s)	147, 299
AsuC2I	CCSGG	2 cut(s)	245, 325
AsuHPI	GGTGA	1 cut(s)	41
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	274, 296
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	2 cut(s)	245, 325
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	303
BfoI	RGCGCY	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	54
BisI	GCNGC	2 cut(s)	285, 288
BlsI	GCNGC	2 cut(s)	286, 289
Bme1390I	CCNGG	3 cut(s)	245, 262, 325
BmgT120I	GGNCC	2 cut(s)	147, 299
BmiI	GGNNCC	3 cut(s)	113, 236, 258
BmrFI	CCNGG	3 cut(s)	245, 262, 325
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	51
BpuMI	CCSGG	2 cut(s)	245, 325
BsaBI	GATNNNNATC	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 244
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	165
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	161, 244
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	15
BseXI	GCAGC	2 cut(s)	274, 296
BseYI	CCCAGC	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	149, 300
BshNI	GGYRCC	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	3 cut(s)	232, 244, 324
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	161, 244
BsmAI	GTCTC	1 cut(s)	221
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	149, 300
Bsp143I	GATC	2 cut(s)	106, 256
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	2 cut(s)	149, 300
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	3 cut(s)	113, 236, 258
BspMI	ACCTGC	1 cut(s)	54
BspPI	GGATC	2 cut(s)	251, 264
BspT107I	GGYRCC	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	2 cut(s)	106, 256
BssNI	GRCGYC	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	2 cut(s)	209, 215
Bst6I	CTCTTC	1 cut(s)	177
BstACI	GRCGYC	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	163, 233
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	165
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	183, 237
BstKTI	GATC	2 cut(s)	109, 259
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	2 cut(s)	106, 256
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 228
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	3 cut(s)	243, 260, 323
BstV1I	GCAGC	2 cut(s)	274, 296
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	149, 300
BtsCI	GGATG	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	163, 233
CaiI	CAGNNNCTG	2 cut(s)	161, 287
CfoI	GCGC	2 cut(s)	183, 237
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	2 cut(s)	147, 299
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	152
CviJI	RGCY	7 cut(s)	114, 120, 149, 161, 287, 300, 306
CviKI_1	RGCY	7 cut(s)	114, 120, 149, 161, 287, 300, 306
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	1 cut(s)	218
DinI	GGCGCC	1 cut(s)	236
DpnI	GATC	2 cut(s)	108, 258
DpnII	GATC	2 cut(s)	106, 256
DrdI	GACNNNNNNGTC	1 cut(s)	57
DseDI	GACNNNNNNGTC	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	236
EheI	GGCGCC	1 cut(s)	236
Esp3I	CGTCTC	1 cut(s)	221
FaiI	YATR	5 cut(s)	75, 81, 89, 140, 272
FaqI	GGGAC	1 cut(s)	260
FauI	CCCGC	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	285, 288
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	285, 288
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	2 cut(s)	182, 236
GluI	GCNGC	2 cut(s)	285, 288
GsaI	CCCAGC	1 cut(s)	284
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	149, 300
HapII	CCGG	3 cut(s)	232, 244, 324
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	2 cut(s)	183, 237
Hin1I	GRCGYC	1 cut(s)	235
Hin6I	GCGC	2 cut(s)	181, 235
HinP1I	GCGC	2 cut(s)	181, 235
HpaII	CCGG	3 cut(s)	232, 244, 324
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	3 cut(s)	106, 111, 313
Hpy8I	GTNNAC	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	209, 215
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 228
HpyF3I	CTNAG	1 cut(s)	218
Hsp92I	GRCGYC	1 cut(s)	235
HspAI	GCGC	2 cut(s)	181, 235
KasI	GGCGCC	1 cut(s)	234
KroI	GCCGGC	1 cut(s)	231
KroNI	GCCGGC	1 cut(s)	233
Kzo9I	GATC	2 cut(s)	106, 256
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	9 cut(s)	37, 49, 147, 168, 245, 247, 257, 274, 294
Lsp1109I	GCAGC	2 cut(s)	274, 296
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	2 cut(s)	108, 258
MboI	GATC	2 cut(s)	106, 256
MboII	GAAGA	3 cut(s)	56, 164, 277
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	2 cut(s)	70, 82
Mly113I	GGCGCC	1 cut(s)	235
MnlI	CCTC	6 cut(s)	20, 50, 119, 138, 180, 247
MreI	CGCCGGCG	1 cut(s)	231
MroNI	GCCGGC	1 cut(s)	231
MseI	TTAA	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	3 cut(s)	232, 244, 324
MspR9I	CCNGG	3 cut(s)	245, 262, 325
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	60, 228
NaeI	GCCGGC	1 cut(s)	233
NarI	GGCGCC	1 cut(s)	235
NciI	CCSGG	2 cut(s)	245, 325
NdeII	GATC	2 cut(s)	106, 256
NgoMIV	GCCGGC	1 cut(s)	231
NlaIV	GGNNCC	3 cut(s)	113, 236, 258
PdiI	GCCGGC	1 cut(s)	233
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	286, 289
Ple19I	CGATCG	1 cut(s)	109
PluTI	GGCGCC	1 cut(s)	238
PsiI	TTATAA	2 cut(s)	75, 140
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	3 cut(s)	113, 236, 258
PspPI	GGNCC	2 cut(s)	147, 299
PstNI	CAGNNNCTG	2 cut(s)	161, 287
PsuI	RGATCY	1 cut(s)	256
PvuI	CGATCG	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	2 cut(s)	285, 288
Sau3AI	GATC	2 cut(s)	106, 256
Sau96I	GGNCC	2 cut(s)	147, 299
ScrFI	CCNGG	3 cut(s)	245, 262, 325
SetI	ASST	8 cut(s)	31, 61, 68, 122, 130, 163, 289, 308
SfaNI	GCATC	1 cut(s)	174
SfoI	GGCGCC	1 cut(s)	236
SgrAI	CRCCGGYG	1 cut(s)	231
Sse9I	AATT	2 cut(s)	70, 82
SsiI	CCGC	1 cut(s)	229
SspDI	GGCGCC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	243, 260, 323
TaaI	ACNGT	2 cut(s)	209, 215
TaqI	TCGA	2 cut(s)	42, 124
TasI	AATT	2 cut(s)	70, 82
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	2 cut(s)	284, 287
TspDTI	ATGAA	1 cut(s)	287
TspGWI	ACGGA	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	161
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.