Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005774

Physical Location & Seq

Genomic Coordinates Forward (+)

10758572 .. 10761828

Gene Structure 3257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g11910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCATCCACCATCTTGCGAAAAAAGCCCTGTCCTCCTCTGGTTTCCTTTCTCGCACAAGGTAAAATCACTCTCTCTCTCTCTCTCTCACAAGTCACAAGAGGCCTCCATGGCTTCTTCTGCTTCTGCAATCACAACCGTCCTTTCCCGCCTCTCCCTAATCCGATTGGCACCCAAACCCTCCCCATCATCTCCTTATACAATCCCACTCTTTTCCCCCAAGCCCAAGGGTCCGAATCCGAAATACCGATTCCGATTGTTTTCTTCAATGGCTTCCGAACCGAAAGAATCTCCGGCCAACAATCCGGGCCTCCAGGCCACCCCAGATGAAGCCACTAAGGGTTACATCATGCAGCAAACTATGTTCCGAATTAAGGACCCGAAAGCCAGTCTTGACTTTTATTCGCGTGTTTTGGGAATGTCGCTACTTAAGAAGCTCGATTTTCCAGAAATGAAGTTTAGTTTGTACTTTTTGGGCTATGAGGACCCTGCTTCAGCTCCAACTAACTCGGTTGATAGAACAGTTTGGACTTTTGGTCGGAAGGCTACAATTGAGTTGACACATAATTGGGGTACTGAAAGTGATCCAGAATTCAAAGGATATCACAATGGGAATTCAGAACCTCGTGGCTTTGGACACATTGGCATCACCGTTGATGATACATACAAGGCATGTGAGAGATTTGAAAGTCTTGGGGTAGAATTTGTGAAAAAGCCAGATGATGGAAAGATGAAAGGGATTGCATTCATTAAGGATCCTGATGGTTATTGGATCGAGATCTTTGACCTTAAAACTATAGGAAAAGTCACAGCTGATGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

275

Amino Acids

30.51

Weight (kDa)

8.99

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	118 - 260	1.2e-26	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	119 - 242	4.4e-07	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08110 AT1G08110 AT1G08110 AT1G08110
fragaria_vesca	FvH4_3g30960 FvH4_3g30960 FvH4_3g30960
malus_domestica	MD00G1032700.v1.1 MD11G1146100.v1.1
prunus_persica	Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1
pyrus_communis	pycom11g11910
rosa_chinensis	RchiOBHm_Chr5g0057511 RchiOBHm_Chr5g0057571
rosa_laevigata	RLG00000035161
rosa_multiflora	Rmu_sc0000508.1_g000002
rosa_roxburghii	Rroxscaffold_1G00022920
rosa_rugosa	Rorug05G0307800 Rorug05G0307900
rosa_samantha	Rh5AG376400 Rh5BG387200 Rh5CG410700 Rh5DG401400
rosa_wichuraiana	Rw5G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccB7I	CCANNNNNTGG	1 cut(s)	722
AccII	CGCG	1 cut(s)	406
AciI	CCGC	1 cut(s)	148
AclWI	GGATC	4 cut(s)	578, 749, 762, 779
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	3 cut(s)	590, 613, 701
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	2 cut(s)	467, 574
AfiI	CCNNNNNNNGG	2 cut(s)	373, 722
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	3 cut(s)	267, 595, 686
AhdI	GACNNNNNGTC	1 cut(s)	534
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	3 cut(s)	436, 497, 812
AluI	AGCT	3 cut(s)	436, 497, 812
AlwI	GGATC	4 cut(s)	578, 749, 762, 779
AoxI	GGCC	4 cut(s)	102, 294, 307, 315
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	3 cut(s)	590, 613, 701
AspS9I	GGNCC	4 cut(s)	230, 307, 376, 484
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	640
AvaII	GGWCC	3 cut(s)	230, 376, 484
BamHI	GGATCC	1 cut(s)	754
BanI	GGYRCC	1 cut(s)	169
BauI	CACGAG	1 cut(s)	624
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	4 cut(s)	19, 193, 716, 755
BciT130I	CCWGG	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	795
BfrI	CTTAAG	1 cut(s)	428
BglI	GCCNNNNNGGC	1 cut(s)	110
BglII	AGATCT	1 cut(s)	777
BisI	GCNGC	1 cut(s)	353
BlsI	GCNGC	1 cut(s)	354
Bme1390I	CCNGG	2 cut(s)	306, 314
Bme18I	GGWCC	3 cut(s)	230, 376, 484
BmeRI	GACNNNNNGTC	1 cut(s)	534
BmgT120I	GGNCC	4 cut(s)	230, 307, 376, 484
BmiI	GGNNCC	5 cut(s)	171, 231, 378, 486, 756
BmrFI	CCNGG	2 cut(s)	306, 314
BmsI	GCATC	3 cut(s)	13, 654, 805
BpmI	CTGGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	306
BsaBI	GATNNNNATC	1 cut(s)	776
BsaJI	CCNNGG	2 cut(s)	108, 225
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 722
Bse1I	ACTGG	1 cut(s)	387
Bse8I	GATNNNNATC	1 cut(s)	776
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	108, 225
BseGI	GGATG	1 cut(s)	4
BseJI	GATNNNNATC	1 cut(s)	776
BseLI	CCNNNNNNNGG	2 cut(s)	373, 722
BseNI	ACTGG	1 cut(s)	387
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	406
BshFI	GGCC	4 cut(s)	104, 296, 309, 317
BshNI	GGYRCC	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	293, 305
BslI	CCNNNNNNNGG	2 cut(s)	373, 722
BsmI	GAATGC	1 cut(s)	743
BsnI	GGCC	4 cut(s)	104, 296, 309, 317
Bsp143I	GATC	4 cut(s)	583, 754, 771, 777
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	4 cut(s)	104, 296, 309, 317
BspFNI	CGCG	1 cut(s)	406
BspLI	GGNNCC	5 cut(s)	171, 231, 378, 486, 756
BspPI	GGATC	4 cut(s)	578, 749, 762, 779
BspT107I	GGYRCC	1 cut(s)	169
BspTI	CTTAAG	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	2 cut(s)	108, 225
BssMI	GATC	4 cut(s)	583, 754, 771, 777
BssSI	CACGAG	1 cut(s)	624
BssT1I	CCWWGG	2 cut(s)	108, 225
Bst2BI	CACGAG	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	3 cut(s)	139, 523, 652
BstAFI	CTTAAG	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	4
BstFNI	CGCG	1 cut(s)	406
BstKTI	GATC	4 cut(s)	586, 757, 774, 780
BstMBI	GATC	4 cut(s)	583, 754, 771, 777
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 110, 119
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	675
BstSCI	CCNGG	2 cut(s)	304, 312
BstSFI	CTRYAG	1 cut(s)	795
BstUI	CGCG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	364
BstX2I	RGATCY	2 cut(s)	754, 777
BstYI	RGATCY	2 cut(s)	754, 777
BsuRI	GGCC	4 cut(s)	104, 296, 309, 317
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	4
Cfr13I	GGNCC	4 cut(s)	230, 307, 376, 484
Csp6I	GTAC	2 cut(s)	466, 573
CviAII	CATG	3 cut(s)	109, 349, 672
CviQI	GTAC	2 cut(s)	466, 573
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	4 cut(s)	585, 756, 773, 779
DpnII	GATC	4 cut(s)	583, 754, 771, 777
DriI	GACNNNNNGTC	1 cut(s)	534
EaeI	YGGCCR	1 cut(s)	294
Eam1105I	GACNNNNNGTC	1 cut(s)	534
Eco130I	CCWWGG	2 cut(s)	108, 225
Eco147I	AGGCCT	1 cut(s)	104
Eco32I	GATATC	1 cut(s)	602
Eco47I	GGWCC	3 cut(s)	230, 376, 484
Eco57I	CTGAAG	1 cut(s)	477
EcoO109I	RGGNCCY	2 cut(s)	376, 484
EcoRI	GAATTC	2 cut(s)	590, 613
EcoRII	CCWGG	1 cut(s)	312
EcoRV	GATATC	1 cut(s)	602
EcoT14I	CCWWGG	2 cut(s)	108, 225
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	108, 225
FaeI	CATG	3 cut(s)	112, 352, 675
FaiI	YATR	9 cut(s)	110, 198, 350, 362, 480, 564, 664, 673, 797
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FatI	CATG	3 cut(s)	108, 348, 671
FauI	CCCGC	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	353
GluI	GCNGC	1 cut(s)	353
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	4 cut(s)	104, 296, 309, 317
HapII	CCGG	2 cut(s)	293, 305
Hin1II	CATG	3 cut(s)	112, 352, 675
HincII	GTYRAC	1 cut(s)	558
HindII	GTYRAC	1 cut(s)	558
HinfI	GANTC	3 cut(s)	235, 249, 287
HpaII	CCGG	2 cut(s)	293, 305
HphI	GGTGA	1 cut(s)	640
Hpy166II	GTNNAC	1 cut(s)	558
Hpy188I	TCNGA	8 cut(s)	164, 234, 240, 254, 277, 368, 540, 619
Hpy188III	TCNNGA	6 cut(s)	392, 446, 587, 758, 775, 822
Hpy8I	GTNNAC	1 cut(s)	558
HpyAV	CCTTC	1 cut(s)	535
HpyCH4III	ACNGT	3 cut(s)	139, 523, 652
HpyCH4V	TGCA	4 cut(s)	4, 128, 352, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 110, 119
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	112, 352, 675
Kzo9I	GATC	4 cut(s)	583, 754, 771, 777
LmnI	GCTCC	1 cut(s)	502
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	3 cut(s)	13, 654, 805
MaeIII	GTNAC	3 cut(s)	93, 341, 805
MalI	GATC	4 cut(s)	585, 756, 773, 779
MboI	GATC	4 cut(s)	583, 754, 771, 777
MboII	GAAGA	2 cut(s)	108, 255
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	2 cut(s)	754, 777
MluCI	AATT	6 cut(s)	369, 549, 565, 590, 613, 701
MmeI	TCCRAC	2 cut(s)	518, 524
MnlI	CCTC	9 cut(s)	44, 47, 94, 115, 161, 190, 320, 475, 633
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	372, 429, 750, 789
MspA1I	CMGCKG	1 cut(s)	812
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	2 cut(s)	293, 305
MspR9I	CCNGG	2 cut(s)	306, 314
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	743
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	406
MwoI	GCNNNNNNNGC	3 cut(s)	24, 110, 119
NciI	CCSGG	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	4 cut(s)	583, 754, 771, 777
NlaIII	CATG	3 cut(s)	112, 352, 675
NlaIV	GGNNCC	5 cut(s)	171, 231, 378, 486, 756
NmuCI	GTSAC	2 cut(s)	93, 805
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	675
PceI	AGGCCT	1 cut(s)	104
PctI	GAATGC	1 cut(s)	743
PfeI	GAWTC	3 cut(s)	235, 249, 287
PflMI	CCANNNNNTGG	1 cut(s)	722
PkrI	GCNGC	1 cut(s)	354
PpuMI	RGGWCCY	2 cut(s)	376, 484
Psp5II	RGGWCCY	2 cut(s)	376, 484
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	5 cut(s)	171, 231, 378, 486, 756
PspPI	GGNCC	4 cut(s)	230, 307, 376, 484
PspPPI	RGGWCCY	2 cut(s)	376, 484
PsuI	RGATCY	2 cut(s)	754, 777
PvuII	CAGCTG	1 cut(s)	812
RsaI	GTAC	2 cut(s)	467, 574
RsaNI	GTAC	2 cut(s)	466, 573
SaqAI	TTAA	4 cut(s)	372, 429, 750, 789
SatI	GCNGC	1 cut(s)	353
Sau3AI	GATC	4 cut(s)	583, 754, 771, 777
Sau96I	GGNCC	4 cut(s)	230, 307, 376, 484
ScrFI	CCNGG	2 cut(s)	306, 314
SetI	ASST	6 cut(s)	63, 438, 499, 625, 789, 814
SfaNI	GCATC	3 cut(s)	13, 654, 805
SfcI	CTRYAG	1 cut(s)	795
SinI	GGWCC	3 cut(s)	230, 376, 484
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	6 cut(s)	369, 549, 565, 590, 613, 701
SseBI	AGGCCT	1 cut(s)	104
SsiI	CCGC	1 cut(s)	148
StuI	AGGCCT	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	304, 312
StyI	CCWWGG	2 cut(s)	108, 225
TaaI	ACNGT	3 cut(s)	139, 523, 652
TaqI	TCGA	2 cut(s)	438, 774
TasI	AATT	6 cut(s)	369, 549, 565, 590, 613, 701
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	3 cut(s)	235, 249, 287
Tru1I	TTAA	4 cut(s)	372, 429, 750, 789
Tru9I	TTAA	4 cut(s)	372, 429, 750, 789
TseFI	GTSAC	2 cut(s)	93, 805
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	2 cut(s)	93, 805
TspDTI	ATGAA	4 cut(s)	342, 467, 736, 746
Van91I	CCANNNNNTGG	1 cut(s)	722
Vha464I	CTTAAG	1 cut(s)	428
VpaK11BI	GGWCC	3 cut(s)	230, 376, 484
XapI	RAATTY	3 cut(s)	590, 613, 701
XceI	RCATGY	1 cut(s)	675
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.