Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005774

Physical Location & Seq

Genomic Coordinates Forward (+)

7817417 .. 7822818

Gene Structure 5402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G109100.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCTTCTTCTGCTTCAATCACAACCGCCCTATCTCGCTTTTCCCTAATCCGATTCTCCCTAAAACTCTCTCCGTCGTTTCCACACACAACCCCATTTGTTCTCACTAAACCAAAGGCTCCGAAATACCGGTTCCGCTTGTTTTCAATGGCGTCCGAGCCGAAAGAATCACCCGCCAACAATCCGGGCCTCCACGCCACCCCAGATGAAGCCACTAAGAGTTACTTCATGCAACAAACTATGTTTCGGATTAAGGACCCTAAAGCCAGTCTTGACTTTTATTCACGTGTGTTGGGCATGTCGCTGCTTAAGAGGCTGGACTTTCCAGAAATGAAGTTTAGTTTGTACTTTTTGGGCTATGAGGATCCTGCATCGGCTCCAACTAACCCGGCTGATAGAACAGTTTGGACCTTTGGCCAGAAGGCTACAATTGAGTTAACACATAATTGGGGTACTGAAAGTGATCCAGAATTCAAAGGATATCACAATGGGAATTCGGAACCTCGAGGCTTTGGACACATTGGTGTCACCGTTGATGATACATACAAGGCATGTGAGAGATTTGAACATCTCGGGGTGGAGTTTGTGAAAAAGCCAGATGACGGAAAGATGAAAGGGATAGCATTCATTAAGGATCCTGATGGTTATTGGGTTGAAATCTTTGACCTTAAAACAATAGGAAGCATTACAGGTGGTGCTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0019904 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

235

Amino Acids

26.23

Weight (kDa)

8.49

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08110 AT1G08110 AT1G08110 AT1G08110
fragaria_vesca	FvH4_3g30960 FvH4_3g30960 FvH4_3g30960
malus_domestica	MD00G1032700.v1.1 MD11G1146100.v1.1
prunus_persica	Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1
pyrus_communis	pycom11g11910
rosa_chinensis	RchiOBHm_Chr5g0057511 RchiOBHm_Chr5g0057571
rosa_laevigata	RLG00000035161
rosa_multiflora	Rmu_sc0000508.1_g000002
rosa_roxburghii	Rroxscaffold_1G00022920
rosa_rugosa	Rorug05G0307800 Rorug05G0307900
rosa_samantha	Rh5AG376400 Rh5BG387200 Rh5CG410700 Rh5DG401400
rosa_wichuraiana	Rw5G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	504
AciI	CCGC	3 cut(s)	27, 136, 174
AclWI	GGATC	5 cut(s)	359, 372, 458, 629, 642
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	2 cut(s)	470, 493
AcvI	CACGTG	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	2 cut(s)	347, 454
AfiI	CCNNNNNNNGG	1 cut(s)	602
AflII	CTTAAG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	286
AgeI	ACCGGT	1 cut(s)	129
AgsI	TTSAA	5 cut(s)	18, 147, 475, 566, 656
AleI	CACNNNNGTG	1 cut(s)	522
AlwI	GGATC	5 cut(s)	359, 372, 458, 629, 642
Ama87I	CYCGRG	2 cut(s)	504, 572
AoxI	GGCC	2 cut(s)	187, 415
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	2 cut(s)	470, 493
AsiGI	ACCGGT	1 cut(s)	129
AspS9I	GGNCC	3 cut(s)	187, 256, 408
AsuC2I	CCSGG	2 cut(s)	186, 389
AsuHPI	GGTGA	2 cut(s)	162, 520
AvaI	CYCGRG	2 cut(s)	504, 572
AvaII	GGWCC	2 cut(s)	256, 408
BalI	TGGCCA	1 cut(s)	417
BamHI	GGATCC	2 cut(s)	364, 634
BbrPI	CACGTG	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	1 cut(s)	635
BcnI	CCSGG	2 cut(s)	186, 389
BfrI	CTTAAG	1 cut(s)	308
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
Bme1390I	CCNGG	2 cut(s)	186, 389
Bme18I	GGWCC	2 cut(s)	256, 408
BmeT110I	CYCGRG	2 cut(s)	504, 572
BmgT120I	GGNCC	3 cut(s)	187, 256, 408
BmiI	GGNNCC	7 cut(s)	120, 134, 258, 366, 378, 501, 636
BmrFI	CCNGG	2 cut(s)	186, 389
BmsI	GCATC	1 cut(s)	380
BpuMI	CCSGG	2 cut(s)	186, 389
BsaAI	YACGTR	1 cut(s)	287
BsaHI	GRCGYC	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse118I	RCCGGY	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseNI	ACTGG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	291
BshFI	GGCC	2 cut(s)	189, 417
BshTI	ACCGGT	1 cut(s)	129
BsiHKCI	CYCGRG	2 cut(s)	504, 572
BsiSI	CCGG	3 cut(s)	130, 185, 389
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	2 cut(s)	189, 417
BsoBI	CYCGRG	2 cut(s)	504, 572
Bsp143I	GATC	3 cut(s)	364, 463, 634
BspACI	CCGC	3 cut(s)	27, 136, 174
BspANI	GGCC	2 cut(s)	189, 417
BspLI	GGNNCC	7 cut(s)	120, 134, 258, 366, 378, 501, 636
BspPI	GGATC	5 cut(s)	359, 372, 458, 629, 642
BspTI	CTTAAG	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	129
BssMI	GATC	3 cut(s)	364, 463, 634
BssNI	GRCGYC	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	403, 532
BstACI	GRCGYC	1 cut(s)	152
BstAFI	CTTAAG	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	216
BstKTI	GATC	3 cut(s)	367, 466, 637
BstMBI	GATC	3 cut(s)	364, 463, 634
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 313
BstNSI	RCATGY	2 cut(s)	301, 555
BstSCI	CCNGG	2 cut(s)	184, 387
BstV1I	GCAGC	1 cut(s)	291
BstX2I	RGATCY	2 cut(s)	364, 634
BstYI	RGATCY	2 cut(s)	364, 634
BsuRI	GGCC	2 cut(s)	189, 417
Cfr10I	RCCGGY	1 cut(s)	129
Cfr13I	GGNCC	3 cut(s)	187, 256, 408
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	346, 453
CspAI	ACCGGT	1 cut(s)	129
CviAII	CATG	3 cut(s)	229, 298, 552
CviQI	GTAC	2 cut(s)	346, 453
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	3 cut(s)	366, 465, 636
DpnII	GATC	3 cut(s)	364, 463, 634
EaeI	YGGCCR	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	482
Eco47I	GGWCC	2 cut(s)	256, 408
Eco72I	CACGTG	1 cut(s)	287
Eco88I	CYCGRG	2 cut(s)	504, 572
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRI	GAATTC	2 cut(s)	470, 493
EcoRV	GATATC	1 cut(s)	482
FaeI	CATG	3 cut(s)	232, 301, 555
FaiI	YATR	7 cut(s)	230, 242, 299, 360, 444, 544, 553
FalI	AAGNNNNNCTT	4 cut(s)	209, 241, 255, 287
FatI	CATG	3 cut(s)	228, 297, 551
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	305
GluI	GCNGC	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	189, 417
HapII	CCGG	3 cut(s)	130, 185, 389
HgaI	GACGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	3 cut(s)	232, 301, 555
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	2 cut(s)	54, 167
HpaI	GTTAAC	1 cut(s)	438
HpaII	CCGG	3 cut(s)	130, 185, 389
HphI	GGTGA	2 cut(s)	162, 520
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188I	TCNGA	5 cut(s)	53, 123, 157, 249, 499
Hpy188III	TCNNGA	5 cut(s)	272, 326, 467, 638, 702
Hpy8I	GTNNAC	1 cut(s)	438
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	415
HpyCH4III	ACNGT	2 cut(s)	403, 532
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	2 cut(s)	232, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 313
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	286
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	3 cut(s)	232, 301, 555
KspAI	GTTAAC	1 cut(s)	438
Kzo9I	GATC	3 cut(s)	364, 463, 634
LmnI	GCTCC	2 cut(s)	124, 382
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	1 cut(s)	380
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	2 cut(s)	221, 526
MalI	GATC	3 cut(s)	366, 465, 636
MboI	GATC	3 cut(s)	364, 463, 634
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	2 cut(s)	364, 634
MlsI	TGGCCA	1 cut(s)	417
MluCI	AATT	4 cut(s)	429, 445, 470, 493
MluNI	TGGCCA	1 cut(s)	417
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	5 cut(s)	200, 306, 355, 500, 513
Mox20I	TGGCCA	1 cut(s)	417
MscI	TGGCCA	1 cut(s)	417
MseI	TTAA	5 cut(s)	252, 309, 437, 630, 669
MslI	CAYNNNNRTG	1 cut(s)	522
Msp20I	TGGCCA	1 cut(s)	417
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	3 cut(s)	130, 185, 389
MspR9I	CCNGG	2 cut(s)	186, 389
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	623
MwoI	GCNNNNNNNGC	2 cut(s)	11, 313
NciI	CCSGG	2 cut(s)	186, 389
NdeII	GATC	3 cut(s)	364, 463, 634
NlaIII	CATG	3 cut(s)	232, 301, 555
NlaIV	GGNNCC	7 cut(s)	120, 134, 258, 366, 378, 501, 636
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	2 cut(s)	301, 555
OliI	CACNNNNGTG	1 cut(s)	522
PaeR7I	CTCGAG	1 cut(s)	504
PctI	GAATGC	1 cut(s)	623
PfeI	GAWTC	2 cut(s)	54, 167
PinAI	ACCGGT	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	306
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
Ppu21I	YACGTR	1 cut(s)	287
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
PspCI	CACGTG	1 cut(s)	287
PspN4I	GGNNCC	7 cut(s)	120, 134, 258, 366, 378, 501, 636
PspPI	GGNCC	3 cut(s)	187, 256, 408
PspPPI	RGGWCCY	1 cut(s)	256
PspXI	VCTCGAGB	1 cut(s)	504
PsuI	RGATCY	2 cut(s)	364, 634
RsaI	GTAC	2 cut(s)	347, 454
RsaNI	GTAC	2 cut(s)	346, 453
RseI	CAYNNNNRTG	1 cut(s)	522
SaqAI	TTAA	5 cut(s)	252, 309, 437, 630, 669
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	3 cut(s)	364, 463, 634
Sau96I	GGNCC	3 cut(s)	187, 256, 408
ScrFI	CCNGG	2 cut(s)	186, 389
SetI	ASST	5 cut(s)	289, 413, 505, 669, 694
SfaNI	GCATC	1 cut(s)	380
Sfr274I	CTCGAG	1 cut(s)	504
SinI	GGWCC	2 cut(s)	256, 408
SlaI	CTCGAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	2 cut(s)	308, 504
SmoI	CTYRAG	2 cut(s)	308, 504
Sse9I	AATT	4 cut(s)	429, 445, 470, 493
SsiI	CCGC	3 cut(s)	27, 136, 174
StyD4I	CCNGG	2 cut(s)	184, 387
TaaI	ACNGT	2 cut(s)	403, 532
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	505
TasI	AATT	4 cut(s)	429, 445, 470, 493
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	2 cut(s)	54, 167
Tru1I	TTAA	5 cut(s)	252, 309, 437, 630, 669
Tru9I	TTAA	5 cut(s)	252, 309, 437, 630, 669
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	5 cut(s)	217, 222, 347, 616, 626
TspGWI	ACGGA	2 cut(s)	63, 618
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	256, 408
XapI	RAATTY	2 cut(s)	470, 493
XceI	RCATGY	2 cut(s)	301, 555
XhoI	CTCGAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.