Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005774

Physical Location & Seq

Genomic Coordinates Reverse (-)

63524213 .. 63528096

Gene Structure 3884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG401400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCAATCACAACCGCTTTTTCCCGCCTCTCCCTCCTGATCCGATTCACACCCAGGCCCTCTCCATCATCATCTTCTTATACAATCCCATTCTTTGCCCCTAACCCAAAGGGTCCCAAGTTCCGATTCCGGTTGTTTTCAATGGCCTCCTCCAATGACAAAGATTCACCTTACAAGAATCCGGGTCTCCAGGCCGTCCCAGATGAAGAAACTAAGGGCTACATCATGCAACAAACTATGTTTCGAATTAAGGACCCCAAAGTCAGTCTTGATTTTTACTCTCGTGTCTTGGGCATGTCGCTACTTAAGAGGCTGGACTTTCCGGAAATGAAGTTTAGTTTGTACTTTCTAGGCTATGCGGATGCTGCCTCAGCTCCAACTAACCCAGTTGATAGAACTGTTTGGACCTTTGGTCAGAAGGCTACAATTGAATTAACACATAACTGGGGTACTGAAAGTGATCCAGAATTCAAAGGATACCACAATGGTAATTCAGAACCTCGTGGCTTTGGACACATTGGCATCACTGTTGATGACACAAAAAAGGCATGCGAGAGATTTGAAAGTCTGGGGGTTGAATTTGTGAAAAGGCTGGACGATGGAAAGATGAAAGGGATAGCATTCATTAAGGATCCAGATGGTTACTGGATTGAGATCTTTGACCTTCAAACTATAGGAAAAGTCACTCTGGGTGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0019904 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

233

Amino Acids

26.24

Weight (kDa)

8.82

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	77 - 219	6.8e-25	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	78 - 197	6.1e-07	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08110 AT1G08110 AT1G08110 AT1G08110
fragaria_vesca	FvH4_3g30960 FvH4_3g30960 FvH4_3g30960
malus_domestica	MD00G1032700.v1.1 MD11G1146100.v1.1
prunus_persica	Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1
pyrus_communis	pycom11g11910
rosa_chinensis	RchiOBHm_Chr5g0057511 RchiOBHm_Chr5g0057571
rosa_laevigata	RLG00000035161
rosa_multiflora	Rmu_sc0000508.1_g000002
rosa_roxburghii	Rroxscaffold_1G00022920
rosa_rugosa	Rorug05G0307800 Rorug05G0307900
rosa_samantha	Rh5AG376400 Rh5BG387200 Rh5CG410700 Rh5DG401400
rosa_wichuraiana	Rw5G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	3 cut(s)	15, 25, 359
AclWI	GGATC	4 cut(s)	34, 455, 626, 639
AcsI	RAATTY	2 cut(s)	467, 578
AfaI	GTAC	2 cut(s)	344, 451
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	6 cut(s)	141, 431, 472, 563, 578, 668
AhdI	GACNNNNNGTC	1 cut(s)	411
AjnI	CCWGG	2 cut(s)	53, 189
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	4 cut(s)	34, 455, 626, 639
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	3 cut(s)	56, 144, 192
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	2 cut(s)	467, 578
AspS9I	GGNCC	4 cut(s)	57, 113, 253, 405
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	159
AsuII	TTCGAA	1 cut(s)	244
AvaII	GGWCC	3 cut(s)	113, 253, 405
BamHI	GGATCC	1 cut(s)	631
BauI	CACGAG	2 cut(s)	282, 501
BbvCI	CCTCAGC	1 cut(s)	370
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	3 cut(s)	73, 593, 632
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	2 cut(s)	55, 191
BciVI	GTATCC	1 cut(s)	470
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	672
BfrI	CTTAAG	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	470
BglII	AGATCT	1 cut(s)	654
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	3 cut(s)	55, 183, 191
Bme18I	GGWCC	3 cut(s)	113, 253, 405
BmeRI	GACNNNNNGTC	1 cut(s)	411
BmgT120I	GGNCC	4 cut(s)	57, 113, 253, 405
BmiI	GGNNCC	4 cut(s)	114, 115, 255, 633
BmrFI	CCNGG	3 cut(s)	55, 183, 191
BmrI	ACTGGG	2 cut(s)	380, 454
BmsI	GCATC	2 cut(s)	352, 531
BmuI	ACTGGG	2 cut(s)	380, 454
BpmI	CTGGAG	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	370
Bpu14I	TTCGAA	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	653
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	53
BsaWI	WCCGGW	2 cut(s)	129, 322
Bse1I	ACTGG	3 cut(s)	386, 449, 650
Bse8I	GATNNNNATC	1 cut(s)	653
BseAI	TCCGGA	1 cut(s)	322
BseBI	CCWGG	2 cut(s)	55, 191
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	367
BseJI	GATNNNNATC	1 cut(s)	653
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	3 cut(s)	386, 449, 650
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	1 cut(s)	352
BshFI	GGCC	3 cut(s)	58, 146, 194
BsiSI	CCGG	3 cut(s)	130, 182, 323
BslFI	GGGAC	2 cut(s)	99, 182
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	2 cut(s)	99, 182
BsmI	GAATGC	1 cut(s)	620
BsnI	GGCC	3 cut(s)	58, 146, 194
Bso31I	GGTCTC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	244
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	39, 460, 631, 654
BspACI	CCGC	3 cut(s)	15, 25, 359
BspANI	GGCC	3 cut(s)	58, 146, 194
BspCNI	CTCAG	1 cut(s)	383
BspEI	TCCGGA	1 cut(s)	322
BspLI	GGNNCC	4 cut(s)	114, 115, 255, 633
BspPI	GGATC	4 cut(s)	34, 455, 626, 639
BspT104I	TTCGAA	1 cut(s)	244
BspTI	CTTAAG	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	191
BsrI	ACTGG	3 cut(s)	386, 449, 650
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	4 cut(s)	39, 460, 631, 654
BssSI	CACGAG	2 cut(s)	282, 501
Bst2BI	CACGAG	2 cut(s)	282, 501
Bst2UI	CCWGG	2 cut(s)	55, 191
Bst4CI	ACNGT	2 cut(s)	400, 529
BstAFI	CTTAAG	1 cut(s)	305
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	2 cut(s)	213, 370
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	4 cut(s)	42, 463, 634, 657
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	4 cut(s)	39, 460, 631, 654
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 371
BstNI	CCWGG	2 cut(s)	55, 191
BstNSI	RCATGY	2 cut(s)	298, 552
BstSCI	CCNGG	3 cut(s)	53, 181, 189
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	1 cut(s)	352
BstX2I	RGATCY	2 cut(s)	631, 654
BstYI	RGATCY	2 cut(s)	631, 654
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	3 cut(s)	58, 146, 194
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	1 cut(s)	550
Cfr13I	GGNCC	4 cut(s)	57, 113, 253, 405
Csp6I	GTAC	2 cut(s)	343, 450
CviAII	CATG	3 cut(s)	226, 295, 549
CviQI	GTAC	2 cut(s)	343, 450
DdeI	CTNAG	2 cut(s)	213, 370
DpnI	GATC	4 cut(s)	41, 462, 633, 656
DpnII	GATC	4 cut(s)	39, 460, 631, 654
DrdI	GACNNNNNNGTC	1 cut(s)	260
DriI	GACNNNNNGTC	1 cut(s)	411
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eam1105I	GACNNNNNGTC	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	3 cut(s)	113, 253, 405
EcoO109I	RGGNCCY	3 cut(s)	57, 113, 253
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	2 cut(s)	53, 189
FaeI	CATG	3 cut(s)	229, 298, 552
FaiI	YATR	8 cut(s)	81, 227, 239, 296, 357, 441, 550, 674
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FaqI	GGGAC	2 cut(s)	99, 182
FatI	CATG	3 cut(s)	225, 294, 548
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	3 cut(s)	58, 146, 194
HapII	CCGG	3 cut(s)	130, 182, 323
Hin1II	CATG	3 cut(s)	229, 298, 552
HinfI	GANTC	4 cut(s)	45, 126, 164, 178
HpaII	CCGG	3 cut(s)	130, 182, 323
HphI	GGTGA	1 cut(s)	159
Hpy188I	TCNGA	4 cut(s)	44, 125, 417, 496
Hpy188III	TCNNGA	6 cut(s)	37, 269, 323, 464, 635, 699
HpyAV	CCTTC	2 cut(s)	412, 674
HpyCH4III	ACNGT	2 cut(s)	400, 529
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 371
HpyF3I	CTNAG	2 cut(s)	213, 370
Hsp92II	CATG	3 cut(s)	229, 298, 552
KflI	GGGWCCC	1 cut(s)	113
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	39, 460, 631, 654
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	2 cut(s)	352, 531
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	641, 682
MalI	GATC	4 cut(s)	41, 462, 633, 656
MboI	GATC	4 cut(s)	39, 460, 631, 654
MboII	GAAGA	2 cut(s)	66, 218
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	2 cut(s)	631, 654
MluCI	AATT	6 cut(s)	246, 426, 431, 467, 490, 578
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	8 cut(s)	38, 44, 70, 157, 160, 303, 379, 510
MroI	TCCGGA	1 cut(s)	322
MseI	TTAA	4 cut(s)	249, 306, 434, 627
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	3 cut(s)	130, 182, 323
MspR9I	CCNGG	3 cut(s)	55, 183, 191
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	2 cut(s)	55, 191
MwoI	GCNNNNNNNGC	2 cut(s)	365, 371
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	4 cut(s)	39, 460, 631, 654
NlaIII	CATG	3 cut(s)	229, 298, 552
NlaIV	GGNNCC	4 cut(s)	114, 115, 255, 633
NmuCI	GTSAC	1 cut(s)	682
NspI	RCATGY	2 cut(s)	298, 552
NspV	TTCGAA	1 cut(s)	244
PaeI	GCATGC	1 cut(s)	552
PctI	GAATGC	1 cut(s)	620
PfeI	GAWTC	4 cut(s)	45, 126, 164, 178
PkrI	GCNGC	1 cut(s)	367
PpuMI	RGGWCCY	2 cut(s)	113, 253
Psp5II	RGGWCCY	2 cut(s)	113, 253
Psp6I	CCWGG	2 cut(s)	53, 189
PspGI	CCWGG	2 cut(s)	53, 189
PspN4I	GGNNCC	4 cut(s)	114, 115, 255, 633
PspPI	GGNCC	4 cut(s)	57, 113, 253, 405
PspPPI	RGGWCCY	2 cut(s)	113, 253
PsuI	RGATCY	2 cut(s)	631, 654
RsaI	GTAC	2 cut(s)	344, 451
RsaNI	GTAC	2 cut(s)	343, 450
SaqAI	TTAA	4 cut(s)	249, 306, 434, 627
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	4 cut(s)	39, 460, 631, 654
Sau96I	GGNCC	4 cut(s)	57, 113, 253, 405
ScrFI	CCNGG	3 cut(s)	55, 183, 191
SetI	ASST	5 cut(s)	172, 376, 410, 502, 666
SfaNI	GCATC	2 cut(s)	352, 531
SfcI	CTRYAG	1 cut(s)	672
SfuI	TTCGAA	1 cut(s)	244
SinI	GGWCC	3 cut(s)	113, 253, 405
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SphI	GCATGC	1 cut(s)	552
Sse9I	AATT	6 cut(s)	246, 426, 431, 467, 490, 578
SsiI	CCGC	3 cut(s)	15, 25, 359
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	3 cut(s)	53, 181, 189
TaaI	ACNGT	2 cut(s)	400, 529
TaqI	TCGA	1 cut(s)	244
TasI	AATT	6 cut(s)	246, 426, 431, 467, 490, 578
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	4 cut(s)	45, 126, 164, 178
Tru1I	TTAA	4 cut(s)	249, 306, 434, 627
Tru9I	TTAA	4 cut(s)	249, 306, 434, 627
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	4 cut(s)	219, 344, 613, 623
TspRI	CASTG	1 cut(s)	532
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	3 cut(s)	113, 253, 405
XapI	RAATTY	2 cut(s)	467, 578
XceI	RCATGY	2 cut(s)	298, 552
XcmI	CCANNNNNNNNNTGG	1 cut(s)	642
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.