Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005774

Physical Location & Seq

Genomic Coordinates Reverse (-)

24618274 .. 24625536

Gene Structure 7263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30960.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCCTCCTCGGACGACAAAGACTCACAGTTCAAGAATCCGGGTCTCCAGGCTGTCCCGGATGAGGAGACTAAGGGCTACATCATGCAACAAACTATGTTTCGAATTAAGGATCCCAAAGTCAGTCTTGATTTCTACTCTCGTGTCCTGGGCATGTCGCTACTTAAGAGGCTGGACTTTCCAGAAATGAAGTTTAGTTTATACTTTCTGGGCTATGTGGATGCTGCCTCAGCTCCAACTAACCCAGTTGATAGAACTGTTTGGACCTTTGGTCAGAAGGCTACAATTGAGTTGACACATAACTGGGGGACTGAAAGTGATCCAGAATTCAAAGGATACCACAATGGGAATTCAGAACCTCGTGGCTTTGGACACATTGGCATCACTGTTGATGACACATACAAGGCATGTGAGAGATTTGAACGTCTGGGGGTTGAATTTGTGAAGAAGCCGGATGATGGAAAGATGAAAGGGATAGCATTCATTAAGGATCCAGATGGTTACTGGATTGAGATCTTTGACCTTCAAACTATAGGAAAAATAACTCTGGGTACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0019904 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

187

Amino Acids

21.07

Weight (kDa)

5.26

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	30 - 172	6.8e-26	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	31 - 154	3.7e-07	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08110 AT1G08110 AT1G08110 AT1G08110
fragaria_vesca	FvH4_3g30960 FvH4_3g30960 FvH4_3g30960
malus_domestica	MD00G1032700.v1.1 MD11G1146100.v1.1
prunus_persica	Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1
pyrus_communis	pycom11g11910
rosa_chinensis	RchiOBHm_Chr5g0057511 RchiOBHm_Chr5g0057571
rosa_laevigata	RLG00000035161
rosa_multiflora	Rmu_sc0000508.1_g000002
rosa_roxburghii	Rroxscaffold_1G00022920
rosa_rugosa	Rorug05G0307800 Rorug05G0307900
rosa_samantha	Rh5AG376400 Rh5BG387200 Rh5CG410700 Rh5DG401400
rosa_wichuraiana	Rw5G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	107, 120, 314, 485, 498
AcsI	RAATTY	3 cut(s)	326, 349, 437
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	2 cut(s)	64, 458
AflII	CTTAAG	1 cut(s)	164
AgsI	TTSAA	5 cut(s)	34, 331, 422, 437, 527
AhdI	GACNNNNNGTC	1 cut(s)	270
AjnI	CCWGG	2 cut(s)	48, 147
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	2 cut(s)	50, 62
AlwI	GGATC	5 cut(s)	107, 120, 314, 485, 498
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	3 cut(s)	326, 349, 437
AspS9I	GGNCC	1 cut(s)	264
AsuC2I	CCSGG	2 cut(s)	42, 59
AsuII	TTCGAA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	264
BamHI	GGATCC	2 cut(s)	112, 490
BauI	CACGAG	2 cut(s)	141, 360
BbvCI	CCTCAGC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	452, 491
BciT130I	CCWGG	2 cut(s)	50, 149
BciVI	GTATCC	1 cut(s)	329
BcnI	CCSGG	2 cut(s)	42, 59
BcoDI	GTCTC	2 cut(s)	50, 62
BfmI	CTRYAG	1 cut(s)	531
BfrI	CTTAAG	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	329
BglII	AGATCT	1 cut(s)	513
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	4 cut(s)	42, 50, 59, 149
Bme18I	GGWCC	1 cut(s)	264
BmeRI	GACNNNNNGTC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	114, 492
BmrFI	CCNGG	4 cut(s)	42, 50, 59, 149
BmrI	ACTGGG	2 cut(s)	239, 313
BmsI	GCATC	2 cut(s)	211, 390
BmuI	ACTGGG	2 cut(s)	239, 313
BpmI	CTGGAG	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	229
Bpu14I	TTCGAA	1 cut(s)	103
BpuMI	CCSGG	2 cut(s)	42, 59
BsaBI	GATNNNNATC	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	9, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 458
Bse1I	ACTGG	3 cut(s)	245, 308, 509
Bse8I	GATNNNNATC	1 cut(s)	512
BseBI	CCWGG	2 cut(s)	50, 149
BseDI	CCNNGG	2 cut(s)	9, 148
BseGI	GGATG	3 cut(s)	67, 226, 460
BseJI	GATNNNNATC	1 cut(s)	512
BseLI	CCNNNNNNNGG	2 cut(s)	64, 458
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	3 cut(s)	245, 308, 509
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	211
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	41, 59, 452
BslFI	GGGAC	2 cut(s)	41, 322
BslI	CCNNNNNNNGG	2 cut(s)	64, 458
BsmAI	GTCTC	2 cut(s)	50, 62
BsmFI	GGGAC	2 cut(s)	41, 322
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	103
Bsp143I	GATC	4 cut(s)	112, 319, 490, 513
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	114, 492
BspPI	GGATC	5 cut(s)	107, 120, 314, 485, 498
BspT104I	TTCGAA	1 cut(s)	103
BspTI	CTTAAG	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	50
BsrI	ACTGG	3 cut(s)	245, 308, 509
BssECI	CCNNGG	2 cut(s)	9, 148
BssMI	GATC	4 cut(s)	112, 319, 490, 513
BssSI	CACGAG	2 cut(s)	141, 360
Bst2BI	CACGAG	2 cut(s)	141, 360
Bst2UI	CCWGG	2 cut(s)	50, 149
Bst4CI	ACNGT	3 cut(s)	30, 259, 388
BstAFI	CTTAAG	1 cut(s)	164
BstBI	TTCGAA	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	72, 229
BstF5I	GGATG	3 cut(s)	67, 226, 460
BstKTI	GATC	4 cut(s)	115, 322, 493, 516
BstMAI	GTCTC	2 cut(s)	50, 62
BstMBI	GATC	4 cut(s)	112, 319, 490, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	2 cut(s)	50, 149
BstNSI	RCATGY	2 cut(s)	157, 411
BstSCI	CCNGG	4 cut(s)	40, 48, 57, 147
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	3 cut(s)	112, 490, 513
BstYI	RGATCY	3 cut(s)	112, 490, 513
BsuI	GTATCC	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	3 cut(s)	67, 226, 460
BtsIMutI	CAGTG	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	3 cut(s)	85, 154, 408
CviJI	RGCY	9 cut(s)	5, 53, 78, 172, 213, 233, 281, 366, 451
CviKI_1	RGCY	9 cut(s)	5, 53, 78, 172, 213, 233, 281, 366, 451
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	2 cut(s)	72, 229
DpnI	GATC	4 cut(s)	114, 321, 492, 515
DpnII	GATC	4 cut(s)	112, 319, 490, 513
DriI	GACNNNNNGTC	1 cut(s)	270
Eam1105I	GACNNNNNGTC	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	264
EcoRI	GAATTC	2 cut(s)	326, 349
EcoRII	CCWGG	2 cut(s)	48, 147
FaeI	CATG	3 cut(s)	88, 157, 411
FaiI	YATR	9 cut(s)	86, 98, 155, 202, 216, 300, 400, 409, 533
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	2 cut(s)	41, 322
FatI	CATG	3 cut(s)	84, 153, 407
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	3 cut(s)	74, 233, 467
Fsp4HI	GCNGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	41, 59, 452
Hin1II	CATG	3 cut(s)	88, 157, 411
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	23, 37
HpaII	CCGG	3 cut(s)	41, 59, 452
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	3 cut(s)	13, 276, 355
Hpy188III	TCNNGA	6 cut(s)	34, 128, 182, 323, 494, 558
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	2 cut(s)	271, 533
HpyCH4III	ACNGT	3 cut(s)	30, 259, 388
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	2 cut(s)	72, 229
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	3 cut(s)	88, 157, 411
Kzo9I	GATC	4 cut(s)	112, 319, 490, 513
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	2 cut(s)	211, 390
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	4 cut(s)	114, 321, 492, 515
MboI	GATC	4 cut(s)	112, 319, 490, 513
MboII	GAAGA	1 cut(s)	457
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	3 cut(s)	112, 490, 513
MluCI	AATT	5 cut(s)	105, 285, 326, 349, 437
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	6 cut(s)	16, 19, 58, 162, 238, 369
MseI	TTAA	3 cut(s)	108, 165, 486
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	3 cut(s)	41, 59, 452
MspR9I	CCNGG	4 cut(s)	42, 50, 59, 149
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	2 cut(s)	50, 149
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	2 cut(s)	42, 59
NdeII	GATC	4 cut(s)	112, 319, 490, 513
NlaIII	CATG	3 cut(s)	88, 157, 411
NlaIV	GGNNCC	2 cut(s)	114, 492
NspI	RCATGY	2 cut(s)	157, 411
NspV	TTCGAA	1 cut(s)	103
PctI	GAATGC	1 cut(s)	479
PfeI	GAWTC	1 cut(s)	37
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	48, 147
PspGI	CCWGG	2 cut(s)	48, 147
PspN4I	GGNNCC	2 cut(s)	114, 492
PspPI	GGNCC	1 cut(s)	264
PsuI	RGATCY	3 cut(s)	112, 490, 513
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
SaqAI	TTAA	3 cut(s)	108, 165, 486
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	4 cut(s)	112, 319, 490, 513
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	4 cut(s)	42, 50, 59, 149
SetI	ASST	5 cut(s)	235, 269, 361, 427, 525
SfaNI	GCATC	2 cut(s)	211, 390
SfcI	CTRYAG	1 cut(s)	531
SfuI	TTCGAA	1 cut(s)	103
SinI	GGWCC	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	5 cut(s)	105, 285, 326, 349, 437
StyD4I	CCNGG	4 cut(s)	40, 48, 57, 147
TaaI	ACNGT	3 cut(s)	30, 259, 388
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	1 cut(s)	103
TasI	AATT	5 cut(s)	105, 285, 326, 349, 437
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	3 cut(s)	108, 165, 486
Tru9I	TTAA	3 cut(s)	108, 165, 486
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	203, 472, 482
TspRI	CASTG	1 cut(s)	391
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	3 cut(s)	326, 349, 437
XceI	RCATGY	2 cut(s)	157, 411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.