Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005774

Physical Location & Seq

Genomic Coordinates Reverse (-)

61515341 .. 61518237

Gene Structure 2897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33434

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGTGACTATGCACCTGCTACTTAAGAGGCTGGACTTTCCGGAAATGAAGTTTAGTTTGTACTTTCTGGGCTATGCGGATGCTGCCTCAGCTCCAACTAACCCAGTTGATAGAATTGTTTGGACCTTTGGTCAGAAGGCTACAATTGAATTAACACATAACTGGGGTACTGAAAGTGATCCAGAATTCAAAGGATACCACAATGGTAATTCAGAACCTCGTGGCTTTGGACACATTGGCATCACTGTTGATGACACAAAAAATGCATGCGAGAGATTTGAACGTCTGGGGGTTGAATTTGTGAAAAGGCTGGATGATGGAAAGATGAAAGGAATAGCATTCATTAAGGATCCAGATGGTTACTGGATTGAGATCTTTGACCTTCAAACTATAGGAAAAGTCACTCTGGGTGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0019904 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

139

Amino Acids

15.7

Weight (kDa)

5.52

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	38 - 125	6.9e-17	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08110 AT1G08110 AT1G08110 AT1G08110
fragaria_vesca	FvH4_3g30960 FvH4_3g30960 FvH4_3g30960
malus_domestica	MD00G1032700.v1.1 MD11G1146100.v1.1
prunus_persica	Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1
pyrus_communis	pycom11g11910
rosa_chinensis	RchiOBHm_Chr5g0057511 RchiOBHm_Chr5g0057571
rosa_laevigata	RLG00000035161
rosa_multiflora	Rmu_sc0000508.1_g000002
rosa_roxburghii	Rroxscaffold_1G00022920
rosa_rugosa	Rorug05G0307800 Rorug05G0307900
rosa_samantha	Rh5AG376400 Rh5BG387200 Rh5CG410700 Rh5DG401400
rosa_wichuraiana	Rw5G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	24
Acc36I	ACCTGC	1 cut(s)	24
AccIII	TCCGGA	1 cut(s)	40
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	3 cut(s)	173, 344, 357
AcsI	RAATTY	2 cut(s)	185, 296
AfaI	GTAC	2 cut(s)	62, 169
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	5 cut(s)	149, 190, 281, 296, 386
AhdI	GACNNNNNGTC	1 cut(s)	129
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
AlwI	GGATC	3 cut(s)	173, 344, 357
Aor13HI	TCCGGA	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	185, 296
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	123
BamHI	GGATCC	1 cut(s)	349
BauI	CACGAG	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	2 cut(s)	311, 350
BciVI	GTATCC	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	390
BfrI	CTTAAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	24
BfuI	GTATCC	1 cut(s)	188
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	123
BmeRI	GACNNNNNGTC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	351
BmrI	ACTGGG	2 cut(s)	98, 172
BmsI	GCATC	2 cut(s)	70, 249
BmuI	ACTGGG	2 cut(s)	98, 172
Bpu10I	CCTNAGC	1 cut(s)	88
BsaBI	GATNNNNATC	1 cut(s)	371
BsaWI	WCCGGW	1 cut(s)	40
Bse1I	ACTGG	3 cut(s)	104, 167, 368
Bse8I	GATNNNNATC	1 cut(s)	371
BseAI	TCCGGA	1 cut(s)	40
BseGI	GGATG	2 cut(s)	85, 319
BseJI	GATNNNNATC	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	3 cut(s)	104, 167, 368
BseXI	GCAGC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	338
Bsp13I	TCCGGA	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	178, 349, 372
BspACI	CCGC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	101
BspEI	TCCGGA	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	351
BspMI	ACCTGC	1 cut(s)	24
BspPI	GGATC	3 cut(s)	173, 344, 357
BspTI	CTTAAG	1 cut(s)	23
BsrI	ACTGG	3 cut(s)	104, 167, 368
BssMI	GATC	3 cut(s)	178, 349, 372
BssSI	CACGAG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	247
BstAFI	CTTAAG	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	85, 319
BstKTI	GATC	3 cut(s)	181, 352, 375
BstMBI	GATC	3 cut(s)	178, 349, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 89
BstNSI	RCATGY	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	70
BstX2I	RGATCY	2 cut(s)	349, 372
BstYI	RGATCY	2 cut(s)	349, 372
BsuI	GTATCC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	85, 319
BtsIMutI	CAGTG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	61, 168
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	6 cut(s)	31, 72, 92, 140, 225, 310
CviKI_1	RGCY	6 cut(s)	31, 72, 92, 140, 225, 310
CviQI	GTAC	2 cut(s)	61, 168
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	3 cut(s)	180, 351, 374
DpnII	GATC	3 cut(s)	178, 349, 372
DriI	GACNNNNNGTC	1 cut(s)	129
Eam1105I	GACNNNNNGTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	185
EcoT22I	ATGCAT	1 cut(s)	268
FaeI	CATG	1 cut(s)	270
FaiI	YATR	5 cut(s)	11, 75, 159, 268, 392
FatI	CATG	1 cut(s)	266
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	2 cut(s)	92, 326
Fsp4HI	GCNGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	84
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	1 cut(s)	270
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	135, 214
Hpy188III	TCNNGA	4 cut(s)	41, 182, 353, 417
HpyAV	CCTTC	2 cut(s)	130, 392
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	2 cut(s)	13, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 89
HpyF3I	CTNAG	1 cut(s)	88
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	1 cut(s)	270
Kpn2I	TCCGGA	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	178, 349, 372
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	2 cut(s)	70, 249
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	3 cut(s)	4, 359, 400
MalI	GATC	3 cut(s)	180, 351, 374
MboI	GATC	3 cut(s)	178, 349, 372
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	2 cut(s)	349, 372
MluCI	AATT	6 cut(s)	114, 144, 149, 185, 208, 296
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	3 cut(s)	21, 97, 228
Mph1103I	ATGCAT	1 cut(s)	268
MroI	TCCGGA	1 cut(s)	40
MseI	TTAA	3 cut(s)	24, 152, 345
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	1 cut(s)	41
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	83, 89
NdeII	GATC	3 cut(s)	178, 349, 372
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	2 cut(s)	4, 400
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	1 cut(s)	270
PaeI	GCATGC	1 cut(s)	270
PaqCI	CACCTGC	1 cut(s)	24
PctI	GAATGC	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	2 cut(s)	349, 372
RsaI	GTAC	2 cut(s)	62, 169
RsaNI	GTAC	2 cut(s)	61, 168
SaqAI	TTAA	3 cut(s)	24, 152, 345
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	3 cut(s)	178, 349, 372
Sau96I	GGNCC	1 cut(s)	123
SetI	ASST	6 cut(s)	18, 94, 128, 220, 286, 384
SfaNI	GCATC	2 cut(s)	70, 249
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SphI	GCATGC	1 cut(s)	270
Sse9I	AATT	6 cut(s)	114, 144, 149, 185, 208, 296
SsiI	CCGC	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	286
TasI	AATT	6 cut(s)	114, 144, 149, 185, 208, 296
TatI	WGTACW	1 cut(s)	60
Tru1I	TTAA	3 cut(s)	24, 152, 345
Tru9I	TTAA	3 cut(s)	24, 152, 345
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	2 cut(s)	4, 400
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	2 cut(s)	4, 400
TspDTI	ATGAA	3 cut(s)	62, 331, 341
TspRI	CASTG	1 cut(s)	250
Vha464I	CTTAAG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	2 cut(s)	185, 296
XceI	RCATGY	1 cut(s)	270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	360
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.