Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005774

Physical Location & Seq

Genomic Coordinates Reverse (-)

61983373 .. 61987631

Gene Structure 4259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035161

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCAATCACAACCGCTTTTTCCCGCCTCTCCCTCCTGATCCGATTCACACCAAGACCCAGACCCTCTCCATCATCATCCCCTTATCCAATCCCATTCTTTGCCCCTAACCCAAAGGGTCCGAAGTTCCGATTCCGGCTGTTTTCAATGGCCTCCTCCGATGACAAAGATTCACCTTACAAGAATCCGGGTCTCCAGGCCGTCCCAGATGAAGAAACTAAGGGCTACATCATGCAACAAACTATGTTTCGAATTAAGGACCCCAAAGTCAGTCTTGATTTTTACTCTCGTGTCTTGGGCATGTCGCTACTCAAGAGGCTGGACTTTCCAGAAATGAAGTTTAGTTTGTACTTTCTGGGCTATGCGGATGCTGCCTCAGCTCCAACTAACCCAGTTGATAGAACTGTTTGGACCTTTGGTCAGAAAGCTACAATTGAATTAACACATAACTGGGGTACTGAAAGTGATCCAGAATTCAAAGGATACCACAATGGTAATTCAGAACCTCGTGGCTTTGGACACATTGGCATCACCGTTGATGACACAAACAAGGCTTGCGAGAGGTTTGAACGTCTGGGGGTTGAATTTGTGAAGAGGCTGGACGATGGAAAGATGAAAGGGATAGCATTCATTAAGGATCCAGATGGTTACTGGATTGAGATCTTTGACCTTCAAACTATAGGAAAAGTCACTCTGGGTGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0019904 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

236

Amino Acids

26.56

Weight (kDa)

8.84

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	79 - 221	1.1e-24	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	80 - 199	5.2e-07	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08110 AT1G08110 AT1G08110 AT1G08110
fragaria_vesca	FvH4_3g30960 FvH4_3g30960 FvH4_3g30960
malus_domestica	MD00G1032700.v1.1 MD11G1146100.v1.1
prunus_persica	Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1
pyrus_communis	pycom11g11910
rosa_chinensis	RchiOBHm_Chr5g0057511 RchiOBHm_Chr5g0057571
rosa_laevigata	RLG00000035161
rosa_multiflora	Rmu_sc0000508.1_g000002
rosa_roxburghii	Rroxscaffold_1G00022920
rosa_rugosa	Rorug05G0307800 Rorug05G0307900
rosa_samantha	Rh5AG376400 Rh5BG387200 Rh5CG410700 Rh5DG401400
rosa_wichuraiana	Rw5G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AciI	CCGC	3 cut(s)	15, 25, 365
AclWI	GGATC	4 cut(s)	34, 461, 632, 645
AcsI	RAATTY	2 cut(s)	473, 584
AfaI	GTAC	2 cut(s)	350, 457
AgsI	TTSAA	6 cut(s)	147, 437, 478, 569, 584, 674
AhdI	GACNNNNNGTC	1 cut(s)	417
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	2 cut(s)	380, 428
AluI	AGCT	2 cut(s)	380, 428
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	4 cut(s)	34, 461, 632, 645
AoxI	GGCC	2 cut(s)	150, 198
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	2 cut(s)	473, 584
AspS9I	GGNCC	3 cut(s)	119, 259, 411
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	165, 523
AsuII	TTCGAA	1 cut(s)	250
AvaII	GGWCC	3 cut(s)	119, 259, 411
BamHI	GGATCC	1 cut(s)	637
BauI	CACGAG	2 cut(s)	288, 507
BbvCI	CCTCAGC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	3 cut(s)	79, 599, 638
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	197
BciVI	GTATCC	1 cut(s)	476
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	678
BfuI	GTATCC	1 cut(s)	476
BglII	AGATCT	1 cut(s)	660
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	2 cut(s)	189, 197
Bme18I	GGWCC	3 cut(s)	119, 259, 411
BmeRI	GACNNNNNGTC	1 cut(s)	417
BmgT120I	GGNCC	3 cut(s)	119, 259, 411
BmiI	GGNNCC	3 cut(s)	120, 261, 639
BmrFI	CCNGG	2 cut(s)	189, 197
BmrI	ACTGGG	2 cut(s)	386, 460
BmsI	GCATC	2 cut(s)	358, 537
BmuI	ACTGGG	2 cut(s)	386, 460
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	376
Bpu14I	TTCGAA	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	659
BsaI	GGTCTC	1 cut(s)	197
Bse1I	ACTGG	3 cut(s)	392, 455, 656
Bse8I	GATNNNNATC	1 cut(s)	659
BseBI	CCWGG	1 cut(s)	197
BseGI	GGATG	2 cut(s)	77, 373
BseJI	GATNNNNATC	1 cut(s)	659
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	3 cut(s)	392, 455, 656
BseRI	GAGGAG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	358
BshFI	GGCC	2 cut(s)	152, 200
BsiSI	CCGG	2 cut(s)	136, 188
BslFI	GGGAC	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	2 cut(s)	152, 200
Bso31I	GGTCTC	1 cut(s)	197
Bsp119I	TTCGAA	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	39, 466, 637, 660
BspACI	CCGC	3 cut(s)	15, 25, 365
BspANI	GGCC	2 cut(s)	152, 200
BspCNI	CTCAG	1 cut(s)	389
BspLI	GGNNCC	3 cut(s)	120, 261, 639
BspPI	GGATC	4 cut(s)	34, 461, 632, 645
BspT104I	TTCGAA	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	197
BsrI	ACTGG	3 cut(s)	392, 455, 656
BssMI	GATC	4 cut(s)	39, 466, 637, 660
BssSI	CACGAG	2 cut(s)	288, 507
Bst2BI	CACGAG	2 cut(s)	288, 507
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	406, 535
Bst6I	CTCTTC	1 cut(s)	587
BstBI	TTCGAA	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	2 cut(s)	219, 376
BstF5I	GGATG	2 cut(s)	77, 373
BstKTI	GATC	4 cut(s)	42, 469, 640, 663
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	4 cut(s)	39, 466, 637, 660
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 377
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	187, 195
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	1 cut(s)	358
BstX2I	RGATCY	2 cut(s)	637, 660
BstYI	RGATCY	2 cut(s)	637, 660
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	2 cut(s)	152, 200
BtsCI	GGATG	2 cut(s)	77, 373
Cac8I	GCNNGC	1 cut(s)	556
Cfr13I	GGNCC	3 cut(s)	119, 259, 411
Csp6I	GTAC	2 cut(s)	349, 456
CviAII	CATG	2 cut(s)	232, 301
CviQI	GTAC	2 cut(s)	349, 456
DdeI	CTNAG	2 cut(s)	219, 376
DpnI	GATC	4 cut(s)	41, 468, 639, 662
DpnII	GATC	4 cut(s)	39, 466, 637, 660
DrdI	GACNNNNNNGTC	1 cut(s)	266
DriI	GACNNNNNGTC	1 cut(s)	417
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	587
Eam1105I	GACNNNNNGTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	587
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	3 cut(s)	119, 259, 411
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	195
FaeI	CATG	2 cut(s)	235, 304
FaiI	YATR	6 cut(s)	233, 245, 302, 363, 447, 680
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	2 cut(s)	231, 300
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	2 cut(s)	64, 380
Fsp4HI	GCNGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	152, 200
HapII	CCGG	2 cut(s)	136, 188
Hin1II	CATG	2 cut(s)	235, 304
HinfI	GANTC	4 cut(s)	45, 132, 170, 184
HpaII	CCGG	2 cut(s)	136, 188
HphI	GGTGA	2 cut(s)	165, 523
Hpy188I	TCNGA	6 cut(s)	44, 123, 131, 160, 423, 502
Hpy188III	TCNNGA	7 cut(s)	37, 275, 313, 329, 470, 641, 705
HpyAV	CCTTC	1 cut(s)	680
HpyCH4III	ACNGT	2 cut(s)	406, 535
HpyCH4IV	ACGT	1 cut(s)	571
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 377
HpyF3I	CTNAG	2 cut(s)	219, 376
HpySE526I	ACGT	1 cut(s)	571
Hsp92II	CATG	2 cut(s)	235, 304
Kzo9I	GATC	4 cut(s)	39, 466, 637, 660
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	2 cut(s)	358, 537
MaeII	ACGT	1 cut(s)	571
MaeIII	GTNAC	2 cut(s)	647, 688
MalI	GATC	4 cut(s)	41, 468, 639, 662
MboI	GATC	4 cut(s)	39, 466, 637, 660
MboII	GAAGA	2 cut(s)	224, 604
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	2 cut(s)	637, 660
MluCI	AATT	6 cut(s)	252, 432, 437, 473, 496, 584
MmeI	TCCRAC	1 cut(s)	407
MseI	TTAA	3 cut(s)	255, 440, 633
MspI	CCGG	2 cut(s)	136, 188
MspR9I	CCNGG	2 cut(s)	189, 197
MunI	CAATTG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	371, 377
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	4 cut(s)	39, 466, 637, 660
NlaIII	CATG	2 cut(s)	235, 304
NlaIV	GGNNCC	3 cut(s)	120, 261, 639
NmuCI	GTSAC	1 cut(s)	688
NspI	RCATGY	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	250
PctI	GAATGC	1 cut(s)	626
PfeI	GAWTC	4 cut(s)	45, 132, 170, 184
PkrI	GCNGC	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	3 cut(s)	120, 261, 639
PspPI	GGNCC	3 cut(s)	119, 259, 411
PspPPI	RGGWCCY	1 cut(s)	259
PsuI	RGATCY	2 cut(s)	637, 660
RsaI	GTAC	2 cut(s)	350, 457
RsaNI	GTAC	2 cut(s)	349, 456
SaqAI	TTAA	3 cut(s)	255, 440, 633
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	4 cut(s)	39, 466, 637, 660
Sau96I	GGNCC	3 cut(s)	119, 259, 411
ScrFI	CCNGG	2 cut(s)	189, 197
SetI	ASST	8 cut(s)	178, 382, 416, 430, 508, 566, 574, 672
SfaNI	GCATC	2 cut(s)	358, 537
SfcI	CTRYAG	1 cut(s)	678
SfuI	TTCGAA	1 cut(s)	250
SinI	GGWCC	3 cut(s)	119, 259, 411
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	6 cut(s)	252, 432, 437, 473, 496, 584
SsiI	CCGC	3 cut(s)	15, 25, 365
StyD4I	CCNGG	2 cut(s)	187, 195
TaaI	ACNGT	2 cut(s)	406, 535
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	1 cut(s)	250
TasI	AATT	6 cut(s)	252, 432, 437, 473, 496, 584
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	4 cut(s)	45, 132, 170, 184
Tru1I	TTAA	3 cut(s)	255, 440, 633
Tru9I	TTAA	3 cut(s)	255, 440, 633
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	4 cut(s)	225, 350, 619, 629
VpaK11BI	GGWCC	3 cut(s)	119, 259, 411
XapI	RAATTY	2 cut(s)	473, 584
XceI	RCATGY	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.