Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005774

Physical Location & Seq

Genomic Coordinates Forward (+)

13717280 .. 13721675

Gene Structure 4396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1146100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGTCCGAACCGAAAGAATCTCCGGCCAACAATCCGGGCCTCCAGGCCACCCCAGATGAAGCCACTAAGGGTTACATCATGCAGCAAACTATGTTCCGAATAAAGGACCCAAAAGCCAGTCTTGACTTTTATTCGCGTGTGTTGGGAATGTCGCTACTTAAGAGGCTCGATTTTCCGGAAATGAAGTTTAGTTTGTACTTTTTGGGCTATGAGGACCCTGCTTCAGCCCCAACTAACTCAGTTGATAGAACAGTTTGGACTTTTGGTCGGAAGGCTACAATTGAGTTGACACATAATTGGGGTACTGAAAGTGATCCAGAATTCAAAGGATATCACAATGGGAATTCAGAACCTCGTGGCTTTGGACACATTGGCATCACCGTTGATGATACATACAAGGCATGTGAGAGATTTGAAAGTCTTGGGATAGAATTTGTGAAAAAGCCAGATGATGGAAAGATGAAAGGGATAGCATTCATTAAGGATCCTGATGGTTATTGGATCGAGATCTTTGACCTTAAAACTATAGGAAAGGTCACAGCTGATGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

186

Amino Acids

20.78

Weight (kDa)

5.28

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	29 - 171	9.4e-27	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	30 - 153	9.8e-08	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08110 AT1G08110 AT1G08110 AT1G08110
fragaria_vesca	FvH4_3g30960 FvH4_3g30960 FvH4_3g30960
malus_domestica	MD00G1032700.v1.1 MD11G1146100.v1.1
prunus_persica	Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1 Prupe.6G109100_v2.0.a1
pyrus_communis	pycom11g11910
rosa_chinensis	RchiOBHm_Chr5g0057511 RchiOBHm_Chr5g0057571
rosa_laevigata	RLG00000035161
rosa_multiflora	Rmu_sc0000508.1_g000002
rosa_roxburghii	Rroxscaffold_1G00022920
rosa_rugosa	Rorug05G0307800 Rorug05G0307900
rosa_samantha	Rh5AG376400 Rh5BG387200 Rh5CG410700 Rh5DG401400
rosa_wichuraiana	Rw5G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	455
AccII	CGCG	1 cut(s)	139
AccIII	TCCGGA	1 cut(s)	178
AclWI	GGATC	4 cut(s)	311, 482, 495, 512
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	3 cut(s)	323, 346, 434
AcuI	CTGAAG	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	200, 307
AfiI	CCNNNNNNNGG	2 cut(s)	106, 455
AflII	CTTAAG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	328, 419
AhdI	GACNNNNNGTC	1 cut(s)	267
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	1 cut(s)	545
AluI	AGCT	1 cut(s)	545
AlwI	GGATC	4 cut(s)	311, 482, 495, 512
Aor13HI	TCCGGA	1 cut(s)	178
AoxI	GGCC	3 cut(s)	27, 40, 48
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	3 cut(s)	323, 346, 434
AspS9I	GGNCC	3 cut(s)	40, 109, 217
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	2 cut(s)	109, 217
BamHI	GGATCC	1 cut(s)	487
BauI	CACGAG	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	2 cut(s)	449, 488
BciT130I	CCWGG	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	528
BfrI	CTTAAG	1 cut(s)	161
BglII	AGATCT	1 cut(s)	510
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
Bme1390I	CCNGG	2 cut(s)	39, 47
Bme18I	GGWCC	2 cut(s)	109, 217
BmeRI	GACNNNNNGTC	1 cut(s)	267
BmgT120I	GGNCC	3 cut(s)	40, 109, 217
BmiI	GGNNCC	3 cut(s)	111, 219, 489
BmrFI	CCNGG	2 cut(s)	39, 47
BmsI	GCATC	2 cut(s)	387, 538
BpmI	CTGGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 455
Bse1I	ACTGG	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	509
BseAI	TCCGGA	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	2 cut(s)	106, 455
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	3 cut(s)	29, 42, 50
BsiSI	CCGG	3 cut(s)	26, 38, 179
BslI	CCNNNNNNNGG	2 cut(s)	106, 455
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	3 cut(s)	29, 42, 50
Bsp13I	TCCGGA	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	316, 487, 504, 510
BspANI	GGCC	3 cut(s)	29, 42, 50
BspCNI	CTCAG	1 cut(s)	254
BspEI	TCCGGA	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	3 cut(s)	111, 219, 489
BspPI	GGATC	4 cut(s)	311, 482, 495, 512
BspTI	CTTAAG	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	120
BssMI	GATC	4 cut(s)	316, 487, 504, 510
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	256, 385
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	69, 241
BstFNI	CGCG	1 cut(s)	139
BstKTI	GATC	4 cut(s)	319, 490, 507, 513
BstMBI	GATC	4 cut(s)	316, 487, 504, 510
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	408
BstSCI	CCNGG	2 cut(s)	37, 45
BstSFI	CTRYAG	1 cut(s)	528
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	2 cut(s)	487, 510
BstYI	RGATCY	2 cut(s)	487, 510
BsuRI	GGCC	3 cut(s)	29, 42, 50
Cfr13I	GGNCC	3 cut(s)	40, 109, 217
Csp6I	GTAC	2 cut(s)	199, 306
CviAII	CATG	2 cut(s)	82, 405
CviQI	GTAC	2 cut(s)	199, 306
DdeI	CTNAG	2 cut(s)	69, 241
DpnI	GATC	4 cut(s)	318, 489, 506, 512
DpnII	GATC	4 cut(s)	316, 487, 504, 510
DriI	GACNNNNNGTC	1 cut(s)	267
EaeI	YGGCCR	1 cut(s)	27
Eam1105I	GACNNNNNGTC	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	335
Eco47I	GGWCC	2 cut(s)	109, 217
Eco57I	CTGAAG	1 cut(s)	210
EcoO109I	RGGNCCY	2 cut(s)	109, 217
EcoRI	GAATTC	2 cut(s)	323, 346
EcoRII	CCWGG	1 cut(s)	45
EcoRV	GATATC	1 cut(s)	335
FaeI	CATG	2 cut(s)	85, 408
FaiI	YATR	7 cut(s)	83, 95, 213, 297, 397, 406, 530
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FatI	CATG	2 cut(s)	81, 404
Fnu4HI	GCNGC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	86
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	3 cut(s)	29, 42, 50
HapII	CCGG	3 cut(s)	26, 38, 179
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	85, 408
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	3 cut(s)	26, 38, 179
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	4 cut(s)	10, 101, 273, 352
Hpy188III	TCNNGA	6 cut(s)	125, 179, 320, 491, 508, 555
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	256, 385
HpyCH4V	TGCA	1 cut(s)	85
HpyF3I	CTNAG	2 cut(s)	69, 241
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	85, 408
Kpn2I	TCCGGA	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	316, 487, 504, 510
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	2 cut(s)	387, 538
MaeIII	GTNAC	2 cut(s)	74, 538
MalI	GATC	4 cut(s)	318, 489, 506, 512
MboI	GATC	4 cut(s)	316, 487, 504, 510
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	2 cut(s)	487, 510
MluCI	AATT	5 cut(s)	282, 298, 323, 346, 434
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	4 cut(s)	53, 159, 208, 366
MroI	TCCGGA	1 cut(s)	178
MseI	TTAA	3 cut(s)	162, 483, 522
MspA1I	CMGCKG	1 cut(s)	545
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	3 cut(s)	26, 38, 179
MspR9I	CCNGG	2 cut(s)	39, 47
MunI	CAATTG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	139
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	4 cut(s)	316, 487, 504, 510
NlaIII	CATG	2 cut(s)	85, 408
NlaIV	GGNNCC	3 cut(s)	111, 219, 489
NmuCI	GTSAC	1 cut(s)	538
NspI	RCATGY	1 cut(s)	408
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	1 cut(s)	87
PpuMI	RGGWCCY	2 cut(s)	109, 217
Psp5II	RGGWCCY	2 cut(s)	109, 217
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	3 cut(s)	111, 219, 489
PspPI	GGNCC	3 cut(s)	40, 109, 217
PspPPI	RGGWCCY	2 cut(s)	109, 217
PsuI	RGATCY	2 cut(s)	487, 510
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	2 cut(s)	200, 307
RsaNI	GTAC	2 cut(s)	199, 306
SaqAI	TTAA	3 cut(s)	162, 483, 522
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	4 cut(s)	316, 487, 504, 510
Sau96I	GGNCC	3 cut(s)	40, 109, 217
ScrFI	CCNGG	2 cut(s)	39, 47
SetI	ASST	4 cut(s)	358, 522, 540, 547
SfaNI	GCATC	2 cut(s)	387, 538
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	2 cut(s)	109, 217
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	5 cut(s)	282, 298, 323, 346, 434
StyD4I	CCNGG	2 cut(s)	37, 45
TaaI	ACNGT	2 cut(s)	256, 385
TaqI	TCGA	2 cut(s)	171, 507
TasI	AATT	5 cut(s)	282, 298, 323, 346, 434
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	162, 483, 522
Tru9I	TTAA	3 cut(s)	162, 483, 522
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	4 cut(s)	75, 200, 469, 479
Van91I	CCANNNNNTGG	1 cut(s)	455
Vha464I	CTTAAG	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	109, 217
XapI	RAATTY	3 cut(s)	323, 346, 434
XceI	RCATGY	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.