AT1G08220

Mitochondrial ATPase complex subunit ATP10-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010232
Physical Location & Seq
Reverse (-)
2581022 .. 2583390
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08220.1

Sequence Viewer

Length: 825 bp
ATGGCGACGACGTTGAATCGAATCCTGAAGCATAGATCAGTCTCTGCTCTCAACAAGCATCATCAAGGACTCTTCTCCCTCACTCGATACGAGAATCATGACTCTCTCCCTTCTCAAATGCCAGCTCTTCGATCAACCACCCGTTCTTTCCTCGATTTTTATAAGTTCGGGAATAAGAAAGCAATTGAAGATGAGCGTGCTAGACTTAATGATGAGATGAATCGGGGTTACTTTGCTGATATGAAAGAATTCAAGGAACATGGTGGTAAGATCGCAGCTGCAAATAAGACTATAATTCCTGCCGCTTCAGCCATCAAATTTCCGGTATTAGCAGTGACTTTCTCTAATGGAAAAAGCCTAAAGTTGCCTATTGCTCCCAACAGCAATGAGGTTGACACAGAGAGTTTGGTTGTTCCTAAAGTATCATTGGTGTGTCTGTCTTTCCGAGCAAGCTCTCAGGAAATGATCAGCTCGTGGAGCAAACCATTTCTTGAATCATTTGGCAACAGGAAAGATCTTCAGTTGTTTGAGGTTTCATTTATAGACAAATGGCTGCTGGGCTTGGCCCCCATAAGAAAACTACTTCTCCGGGTCTTGCAAAAACCAAACAATAACGAGAATAGTGTCCTCCAGAGGCAGGTGGGTTACGCATTTGGAGACCATTACTACTTCCGTAAAGAAATTAAAGTTCTGAACCTTCTCACCGGGTATATTCTCTTACTTGACAAATCCGGGAGAATAAGATGGCAAGGTTTTGGAACAGCAACTCCAGAGGAAGTATCTCAACTTCTCTCTTGCACCTCACTTCTCTTGGAAGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_10

Protein Analysis

274

Amino Acids

31.06

Weight (kDa)

9.55

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_10 PF05176 15 - 269 4.1e-47 ATP10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08220 AT1G08220
fragaria_vesca FvH4_3g30230 FvH4_3g30230 FvH4_3g30230
malus_domestica MD03G1130500.v1.1 MD11G1152100.v1.1
prunus_persica Prupe.6G115300_v2.0.a1 Prupe.6G115300_v2.0.a1
pyrus_communis pycom11g12450
rosa_chinensis RchiOBHm_Chr5g0056101
rosa_laevigata RLG00000035048
rosa_multiflora Rmu_sc0004174.1_g000010
rosa_roxburghii Rroxscaffold_1G00024200
rosa_rugosa Rorug05G0297500
rosa_samantha Rh5AG368400 Rh5BG379100 Rh5CG402300 Rh5DG391800
rosa_wichuraiana Rw0G004490 Rw5G034590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AarI CACCTGC 1 cut(s) 628
Acc36I ACCTGC 1 cut(s) 628
AciI CCGC 1 cut(s) 303
AcsI RAATTY 2 cut(s) 248, 317
AcuI CTGAAG 3 cut(s) 47, 291, 503
AfiI CCNNNNNNNGG 1 cut(s) 637
AgsI TTSAA 4 cut(s) 16, 188, 253, 494
AloI GAACNNNNNNTCC 2 cut(s) 751, 783
AluBI AGCT 4 cut(s) 125, 278, 453, 471
AluI AGCT 4 cut(s) 125, 278, 453, 471
Alw26I GTCTC 2 cut(s) 46, 651
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 1 cut(s) 564
ApeKI GCWGC 3 cut(s) 275, 278, 553
ApoI RAATTY 2 cut(s) 248, 317
Asp700I GAANNNNTTC 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 565
AsuC2I CCSGG 3 cut(s) 590, 706, 733
AsuHPI GGTGA 1 cut(s) 694
BarI GAAGNNNNNNTAC 2 cut(s) 771, 803
BauI CACGAG 1 cut(s) 472
BbvI GCAGC 3 cut(s) 265, 287, 540
BccI CCATC 2 cut(s) 320, 738
BclI TGATCA 1 cut(s) 465
BcnI CCSGG 3 cut(s) 590, 706, 733
BcoDI GTCTC 2 cut(s) 46, 651
BfaI CTAG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 628
BglII AGATCT 1 cut(s) 514
BisI GCNGC 4 cut(s) 276, 279, 303, 554
BlsI GCNGC 4 cut(s) 277, 280, 304, 555
Bme1390I CCNGG 3 cut(s) 590, 706, 733
BmgT120I GGNCC 1 cut(s) 565
BmiI GGNNCC 1 cut(s) 567
BmrFI CCNGG 3 cut(s) 590, 706, 733
BmsI GCATC 1 cut(s) 67
BpmI CTGGAG 2 cut(s) 614, 753
BpuMI CCSGG 3 cut(s) 590, 706, 733
BsaI GGTCTC 1 cut(s) 651
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 4 cut(s) 570, 600, 751, 781
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse3DI GCAATG 1 cut(s) 391
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 470
BseXI GCAGC 3 cut(s) 265, 287, 540
BseYI CCCAGC 1 cut(s) 556
BshFI GGCC 1 cut(s) 566
BsiSI CCGG 4 cut(s) 323, 589, 705, 732
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 2 cut(s) 46, 651
BsnI GGCC 1 cut(s) 566
Bso31I GGTCTC 1 cut(s) 651
Bsp143I GATC 6 cut(s) 35, 131, 270, 465, 514, 817
BspACI CCGC 1 cut(s) 303
BspANI GGCC 1 cut(s) 566
BspCNI CTCAG 1 cut(s) 469
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 567
BspMI ACCTGC 1 cut(s) 628
BspQI GCTCTTC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 651
BsrDI GCAATG 1 cut(s) 391
BssMI GATC 6 cut(s) 35, 131, 270, 465, 514, 817
BssSI CACGAG 1 cut(s) 472
Bst2BI CACGAG 1 cut(s) 472
Bst6I CTCTTC 2 cut(s) 77, 132
BstC8I GCNNGC 3 cut(s) 123, 198, 451
BstDEI CTNAG 1 cut(s) 456
BstKTI GATC 6 cut(s) 38, 134, 273, 468, 517, 820
BstMAI GTCTC 2 cut(s) 46, 651
BstMBI GATC 6 cut(s) 35, 131, 270, 465, 514, 817
BstMWI GCNNNNNNNGC 2 cut(s) 308, 477
BstSCI CCNGG 3 cut(s) 588, 704, 731
BstV1I GCAGC 3 cut(s) 265, 287, 540
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 1 cut(s) 566
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 339
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 3 cut(s) 123, 198, 451
CaiI CAGNNNCTG 1 cut(s) 44
CciI TCATGA 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 565
CviAII CATG 2 cut(s) 98, 260
CviJI RGCY 9 cut(s) 125, 278, 311, 357, 453, 471, 553, 561, 566
CviKI_1 RGCY 9 cut(s) 125, 278, 311, 357, 453, 471, 553, 561, 566
DdeI CTNAG 1 cut(s) 456
DpnI GATC 6 cut(s) 37, 133, 272, 467, 516, 819
DpnII GATC 6 cut(s) 35, 131, 270, 465, 514, 817
Eam1104I CTCTTC 2 cut(s) 77, 132
EarI CTCTTC 2 cut(s) 77, 132
Eco31I GGTCTC 1 cut(s) 651
Eco57I CTGAAG 3 cut(s) 47, 291, 503
EcoRI GAATTC 1 cut(s) 248
FaeI CATG 2 cut(s) 101, 263
FaiI YATR 9 cut(s) 33, 99, 162, 242, 261, 293, 542, 572, 711
FatI CATG 2 cut(s) 97, 259
FbaI TGATCA 1 cut(s) 465
Fnu4HI GCNGC 4 cut(s) 276, 279, 303, 554
Fsp4HI GCNGC 4 cut(s) 276, 279, 303, 554
FspBI CTAG 1 cut(s) 201
GluI GCNGC 4 cut(s) 276, 279, 303, 554
GsaI CCCAGC 1 cut(s) 560
GsuI CTGGAG 2 cut(s) 614, 753
HaeIII GGCC 1 cut(s) 566
HapII CCGG 4 cut(s) 323, 589, 705, 732
Hin1II CATG 2 cut(s) 101, 263
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 7 cut(s) 16, 21, 69, 94, 101, 220, 494
HpaII CCGG 4 cut(s) 323, 589, 705, 732
HphI GGTGA 1 cut(s) 694
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 2 cut(s) 446, 693
Hpy188III TCNNGA 7 cut(s) 25, 98, 169, 458, 491, 631, 770
Hpy8I GTNNAC 1 cut(s) 394
Hpy99I CGWCG 2 cut(s) 10, 13
HpyAV CCTTC 2 cut(s) 120, 707
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 3 cut(s) 281, 598, 798
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 477
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 2 cut(s) 101, 263
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 6 cut(s) 35, 131, 270, 465, 514, 817
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 2 cut(s) 379, 477
Lsp1109I GCAGC 3 cut(s) 265, 287, 540
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 3 cut(s) 227, 334, 644
MalI GATC 6 cut(s) 37, 133, 272, 467, 516, 819
MboI GATC 6 cut(s) 35, 131, 270, 465, 514, 817
MboII GAAGA 4 cut(s) 64, 119, 200, 509
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 1 cut(s) 514
MluCI AATT 5 cut(s) 183, 248, 294, 317, 681
MlyI GAGTC 2 cut(s) 63, 95
MnlI CCTC 8 cut(s) 89, 161, 382, 523, 627, 638, 766, 811
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 2 cut(s) 207, 684
MslI CAYNNNNRTG 1 cut(s) 430
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 4 cut(s) 323, 589, 705, 732
MspR9I CCNGG 3 cut(s) 590, 706, 733
MunI CAATTG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 308, 477
NciI CCSGG 3 cut(s) 590, 706, 733
NdeII GATC 6 cut(s) 35, 131, 270, 465, 514, 817
NlaIII CATG 2 cut(s) 101, 263
NlaIV GGNNCC 1 cut(s) 567
NmuCI GTSAC 1 cut(s) 334
PagI TCATGA 1 cut(s) 97
PaqCI CACCTGC 1 cut(s) 628
PciSI GCTCTTC 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 5 cut(s) 16, 21, 94, 220, 494
PfoI TCCNGGA 1 cut(s) 731
PkrI GCNGC 4 cut(s) 277, 280, 304, 555
PleI GAGTC 2 cut(s) 63, 95
PpsI GAGTC 2 cut(s) 63, 95
PsiI TTATAA 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 556
PspN4I GGNNCC 1 cut(s) 567
PspPI GGNCC 1 cut(s) 565
PstNI CAGNNNCTG 1 cut(s) 44
PsuI RGATCY 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 207, 684
SatI GCNGC 4 cut(s) 276, 279, 303, 554
Sau3AI GATC 6 cut(s) 35, 131, 270, 465, 514, 817
Sau96I GGNCC 1 cut(s) 565
SchI GAGTC 2 cut(s) 63, 95
ScrFI CCNGG 3 cut(s) 590, 706, 733
SfaNI GCATC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 430
Sse9I AATT 5 cut(s) 183, 248, 294, 317, 681
SsiI CCGC 1 cut(s) 303
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 3 cut(s) 588, 704, 731
TaiI ACGT 1 cut(s) 14
TaqI TCGA 4 cut(s) 19, 85, 130, 153
TasI AATT 5 cut(s) 183, 248, 294, 317, 681
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 5 cut(s) 16, 21, 94, 220, 494
Tru1I TTAA 2 cut(s) 207, 684
Tru9I TTAA 2 cut(s) 207, 684
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 3 cut(s) 275, 278, 553
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 3 cut(s) 233, 257, 525
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 1 cut(s) 339
XapI RAATTY 2 cut(s) 248, 317
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.