MD11G1152100.v1.1

ATP10 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0010232
Physical Location & Seq
Forward (+)
14571495 .. 14574830
3336 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1152100.v1.1.491

Sequence Viewer

Length: 804 bp
ATGAGCCGATTCAGCCGAGCTTCCATATTTGCTTCCCAAATCTTGAGGCCCATTGAGAGCAAGAAGCAGCATCTTCTTCCATCTTCCCAGCATTTCTTAGCTCAAAGAAGCTCCAATCGTTTCTTCGACATTTACAAGCTTGGAAGCAAAGCAGCTATAGAGAAAGAGCGTGCCCGGCTTGCAGATGAGTTGAATAGGGGATATTTTGCTGATATGTCAGAGCTTAAAAAACATGGTGGGAAGATTTCTGTGGCAAATAAAACCATAGTTCCTGCAACGGCAGCTGTAAAGTTTCCTGACTTAGAAGTGAACTACTCTGATGGAAAAATATTAAAGCTTCCCGTTTGCTCCGATGGGAATGGAAATGTCGCTGAAGCCAACAAATTGGAAACCCCCAAGGCTTCTTTAGTTTGCCTTTCATTTCGAGCAAGCTCCCAGGGAATGATTAATTCTTGGAGCGCCCCTTTTCTTGATGCTTTTAGTGGTTCAAGGGATGTTCAACTATATGAGGTATCATTAATAGACTCATGGTTATTATGTCGGAGTCCAATTAAGAAGCTTTTGCTTTGGATTATGAGGAAACCAAAGTATGACGAAGGCACTGAACTTAAAAGGCAGATTGTATATTCATTTGGTGACCATTATTACTTCAGAAAAGAACTTAAAATACTGAACCTTCTGACCGGGTATACATTCCTGCTCGATAATTTTGGTAGAATAAGATGGCAAGGCACTGGATTGGCTACGGAAGAGGAATCGTCATCCCTTCTTTCATGCACGAAACTGCTCTTGGAAGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_10

Protein Analysis

268

Amino Acids

30.22

Weight (kDa)

9.38

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_10 PF05176 12 - 263 1.9e-34 ATP10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08220 AT1G08220
fragaria_vesca FvH4_3g30230 FvH4_3g30230 FvH4_3g30230
malus_domestica MD03G1130500.v1.1 MD11G1152100.v1.1
prunus_persica Prupe.6G115300_v2.0.a1 Prupe.6G115300_v2.0.a1
pyrus_communis pycom11g12450
rosa_chinensis RchiOBHm_Chr5g0056101
rosa_laevigata RLG00000035048
rosa_multiflora Rmu_sc0004174.1_g000010
rosa_roxburghii Rroxscaffold_1G00024200
rosa_rugosa Rorug05G0297500
rosa_samantha Rh5AG368400 Rh5BG379100 Rh5CG402300 Rh5DG391800
rosa_wichuraiana Rw0G004490 Rw5G034590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 689
AcuI CTGAAG 2 cut(s) 393, 634
AgsI TTSAA 3 cut(s) 193, 489, 500
AjnI CCWGG 1 cut(s) 435
AjuI GAANNNNNNNTTGG 3 cut(s) 107, 139, 773
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 3 cut(s) 67, 152, 281
AseI ATTAAT 2 cut(s) 447, 518
AspLEI GCGC 1 cut(s) 461
AspS9I GGNCC 1 cut(s) 48
AsuC2I CCSGG 2 cut(s) 175, 685
AsuHPI GGTGA 1 cut(s) 647
BaeGI GKGCMC 1 cut(s) 175
BbvI GCAGC 3 cut(s) 79, 164, 293
BccI CCATC 4 cut(s) 88, 314, 347, 717
BceAI ACGGC 1 cut(s) 294
BciT130I CCWGG 1 cut(s) 437
BcnI CCSGG 2 cut(s) 175, 685
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 462
BisI GCNGC 3 cut(s) 68, 153, 282
BlsI GCNGC 3 cut(s) 69, 154, 283
Bme1390I CCNGG 3 cut(s) 175, 437, 685
BmgT120I GGNCC 1 cut(s) 48
BmrFI CCNGG 3 cut(s) 175, 437, 685
BmsI GCATC 2 cut(s) 79, 463
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 2 cut(s) 175, 685
BsaJI CCNNGG 3 cut(s) 396, 435, 436
Bse1I ACTGG 1 cut(s) 739
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 3 cut(s) 396, 435, 436
BseGI GGATG 2 cut(s) 499, 761
BseNI ACTGG 1 cut(s) 739
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 3 cut(s) 79, 164, 293
BseYI CCCAGC 1 cut(s) 87
BshFI GGCC 1 cut(s) 49
BsiSI CCGG 2 cut(s) 175, 684
BsnI GGCC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 175
BspANI GGCC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 739
BssECI CCNNGG 3 cut(s) 396, 435, 436
BssNAI GTATAC 1 cut(s) 690
BssT1I CCWWGG 1 cut(s) 396
Bst1107I GTATAC 1 cut(s) 690
Bst2UI CCWGG 1 cut(s) 437
Bst6I CTCTTC 2 cut(s) 744, 789
BstC8I GCNNGC 3 cut(s) 171, 180, 430
BstDEI CTNAG 2 cut(s) 97, 301
BstEII GGTNACC 1 cut(s) 635
BstF5I GGATG 2 cut(s) 499, 761
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 1 cut(s) 461
BstMWI GCNNNNNNNGC 4 cut(s) 12, 175, 179, 281
BstNI CCWGG 1 cut(s) 437
BstPI GGTNACC 1 cut(s) 635
BstSCI CCNGG 3 cut(s) 173, 435, 683
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 175
BstV1I GCAGC 3 cut(s) 79, 164, 293
BstXI CCANNNNNNTGG 1 cut(s) 385
BstZ17I GTATAC 1 cut(s) 690
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 2 cut(s) 499, 761
BtsIMutI CAGTG 2 cut(s) 600, 732
Cac8I GCNNGC 3 cut(s) 171, 180, 430
CfoI GCGC 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 48
CviAII CATG 3 cut(s) 233, 528, 774
DdeI CTNAG 2 cut(s) 97, 301
Eam1104I CTCTTC 2 cut(s) 744, 789
EarI CTCTTC 2 cut(s) 744, 789
Eco130I CCWWGG 1 cut(s) 396
Eco57I CTGAAG 2 cut(s) 393, 634
Eco91I GGTNACC 1 cut(s) 635
EcoO65I GGTNACC 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 3 cut(s) 236, 531, 777
FatI CATG 3 cut(s) 232, 527, 773
FblI GTMKAC 1 cut(s) 689
Fnu4HI GCNGC 3 cut(s) 68, 153, 282
FokI GGATG 2 cut(s) 506, 748
Fsp4HI GCNGC 3 cut(s) 68, 153, 282
GlaI GCGC 1 cut(s) 460
GluI GCNGC 3 cut(s) 68, 153, 282
GsaI CCCAGC 1 cut(s) 91
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 1 cut(s) 49
HapII CCGG 2 cut(s) 175, 684
HhaI GCGC 1 cut(s) 461
Hin1II CATG 3 cut(s) 236, 531, 777
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HindIII AAGCTT 3 cut(s) 137, 335, 557
HinfI GANTC 4 cut(s) 9, 524, 544, 755
HpaII CCGG 2 cut(s) 175, 684
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 2 cut(s) 310, 690
Hpy188I TCNGA 6 cut(s) 220, 319, 352, 543, 653, 681
Hpy188III TCNNGA 3 cut(s) 43, 296, 470
Hpy8I GTNNAC 2 cut(s) 310, 690
HpyAV CCTTC 3 cut(s) 590, 686, 776
HpyCH4V TGCA 3 cut(s) 182, 275, 777
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 175, 179, 281
HpyF3I CTNAG 2 cut(s) 97, 301
Hsp92II CATG 3 cut(s) 236, 531, 777
HspAI GCGC 1 cut(s) 459
LmnI GCTCC 4 cut(s) 116, 353, 437, 456
LpnPI CCDG 9 cut(s) 101, 188, 285, 309, 422, 449, 697, 710, 720
Lsp1109I GCAGC 3 cut(s) 79, 164, 293
LweI GCATC 2 cut(s) 79, 463
MaeIII GTNAC 1 cut(s) 635
MboII GAAGA 6 cut(s) 65, 68, 75, 115, 253, 761
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 4 cut(s) 383, 448, 549, 706
MlyI GAGTC 2 cut(s) 518, 553
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 4 cut(s) 39, 502, 570, 745
MseI TTAA 7 cut(s) 225, 332, 447, 518, 552, 609, 663
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 2 cut(s) 175, 684
MspR9I CCNGG 3 cut(s) 175, 437, 685
MvaI CCWGG 1 cut(s) 437
MwoI GCNNNNNNNGC 4 cut(s) 12, 175, 179, 281
NciI CCSGG 2 cut(s) 175, 685
NlaIII CATG 3 cut(s) 236, 531, 777
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 635
PasI CCCWGGG 1 cut(s) 436
PfeI GAWTC 2 cut(s) 9, 755
PkrI GCNGC 3 cut(s) 69, 154, 283
PleI GAGTC 2 cut(s) 518, 552
PpsI GAGTC 2 cut(s) 518, 552
PshBI ATTAAT 2 cut(s) 447, 518
Psp6I CCWGG 1 cut(s) 435
PspEI GGTNACC 1 cut(s) 635
PspFI CCCAGC 1 cut(s) 87
PspGI CCWGG 1 cut(s) 435
PspPI GGNCC 1 cut(s) 48
PsrI GAACNNNNNNTAC 2 cut(s) 651, 683
PvuII CAGCTG 1 cut(s) 284
SaqAI TTAA 7 cut(s) 225, 332, 447, 518, 552, 609, 663
SatI GCNGC 3 cut(s) 68, 153, 282
Sau96I GGNCC 1 cut(s) 48
SchI GAGTC 2 cut(s) 518, 553
ScrFI CCNGG 3 cut(s) 175, 437, 685
SduI GDGCHC 1 cut(s) 175
SfaNI GCATC 2 cut(s) 79, 463
SfcI CTRYAG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 4 cut(s) 383, 448, 549, 706
SspI AATATT 1 cut(s) 330
StyD4I CCNGG 3 cut(s) 173, 435, 683
StyI CCWWGG 1 cut(s) 396
TaqI TCGA 3 cut(s) 126, 424, 702
TasI AATT 4 cut(s) 383, 448, 549, 706
TfiI GAWTC 2 cut(s) 9, 755
Tru1I TTAA 7 cut(s) 225, 332, 447, 518, 552, 609, 663
Tru9I TTAA 7 cut(s) 225, 332, 447, 518, 552, 609, 663
TscAI CASTG 2 cut(s) 607, 739
TseFI GTSAC 1 cut(s) 635
TseI GCWGC 3 cut(s) 67, 152, 281
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 3 cut(s) 408, 618, 762
TspGWI ACGGA 1 cut(s) 761
TspRI CASTG 2 cut(s) 607, 739
VspI ATTAAT 2 cut(s) 447, 518
XmiI GTMKAC 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.