RchiOBHm_Chr5g0056101

ATP10 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0010232
Physical Location & Seq
Reverse (-)
59516203 .. 59520173
3971 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33303

Sequence Viewer

Length: 819 bp
ATGCAGGGCTTGAAGCGATTTACCCGGTCTTCTATATCTGCTTCTCAAATCTTGAGGCCCAATGAGAACAACAACAAGCTTTATCTTCTTCCACCAACCCAGCATTTCTTAGCTCAAAGAACCTCCAATCGCTTCTTCGACTTTTACAAGCTTGGAAATAAAGCGGCGGTAGAGAAAGAGCGGGCACGGCTTGCAGATGAGCTGAATAGGGGTTATTTTGCGGACCTGTCAGAGCTTAAGAAACATGGTGGTAAGATTGCAGAGGCAAATAAAATCCTATTTCCTGCTATGGCAGCTGTAAAGTTCCCTGACTTGGAAGTAAACTACTCTGAAGGAAAAGTATTAAGGCTGCCCTTTAGACCCAATGGAAATGAAAATGTGGCTGATGTGAACATGTCAGCTCTCCCAAAGGCATCTTTACTCTGCCTTTCATTTCGAGCAAGTTCCCAGGGAATGATTGATTCTTGGAGCATCCCTTTTGTCAATGCTTTCAGTGGTTCGAAAGACATTCAATTATTTGAGGTGTCATTTATAGACTCGTGGCTCTTGTGTCGGAAACCAATTAAGCAGCTTCTGCTTCGGATTATGAAGAAACCTAAGCATGTTGAAAACAAGGATACAGTTAAAAGGCAGATCGTATATTCATTCGGCGACCATTATTACTTCAGAAAAGAACTTAAAATCTTGAACCTTCTGACAGGGTACATATTCCTGCTCGATAAGTTTGGTAGAATAAGATGGCAAGGCTCCGGAGTGGCTACGGAAGAGGAGTCATCATCCCTTCTCTCTTGCACATCACTACTCTTGGAAGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_10

Protein Analysis

272

Amino Acids

31.09

Weight (kDa)

9.63

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_10 PF05176 38 - 267 1.6e-35 ATP10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08220 AT1G08220
fragaria_vesca FvH4_3g30230 FvH4_3g30230 FvH4_3g30230
malus_domestica MD03G1130500.v1.1 MD11G1152100.v1.1
prunus_persica Prupe.6G115300_v2.0.a1 Prupe.6G115300_v2.0.a1
pyrus_communis pycom11g12450
rosa_chinensis RchiOBHm_Chr5g0056101
rosa_laevigata RLG00000035048
rosa_multiflora Rmu_sc0004174.1_g000010
rosa_roxburghii Rroxscaffold_1G00024200
rosa_rugosa Rorug05G0297500
rosa_samantha Rh5AG368400 Rh5BG379100 Rh5CG402300 Rh5DG391800
rosa_wichuraiana Rw0G004490 Rw5G034590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 181
AccIII TCCGGA 1 cut(s) 749
AciI CCGC 4 cut(s) 164, 167, 181, 221
AcuI CTGAAG 2 cut(s) 351, 649
AfaI GTAC 1 cut(s) 704
AfiI CCNNNNNNNGG 1 cut(s) 313
AflII CTTAAG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 4 cut(s) 13, 512, 608, 688
AjnI CCWGG 1 cut(s) 447
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 8 cut(s) 79, 113, 151, 202, 235, 296, 401, 571
AluI AGCT 8 cut(s) 79, 113, 151, 202, 235, 296, 401, 571
AlwNI CAGNNNCTG 1 cut(s) 574
Aor13HI TCCGGA 1 cut(s) 749
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 3 cut(s) 293, 349, 568
AspS9I GGNCC 2 cut(s) 57, 223
AsuC2I CCSGG 1 cut(s) 25
AsuII TTCGAA 1 cut(s) 500
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 187
BauI CACGAG 1 cut(s) 538
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 3 cut(s) 305, 336, 580
BccI CCATC 1 cut(s) 732
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 449
BciVI GTATCC 1 cut(s) 610
BcnI CCSGG 1 cut(s) 25
BfrI CTTAAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 610
BisI GCNGC 4 cut(s) 165, 294, 350, 569
BlsI GCNGC 4 cut(s) 166, 295, 351, 570
Bme1390I CCNGG 2 cut(s) 25, 449
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 57, 223
BmiI GGNNCC 1 cut(s) 748
BmrFI CCNGG 2 cut(s) 25, 449
BmsI GCATC 2 cut(s) 422, 480
BpiI GAAGAC 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 500
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 447, 448
BsaWI WCCGGW 1 cut(s) 749
Bsc4I CCNNNNNNNGG 1 cut(s) 313
BseAI TCCGGA 1 cut(s) 749
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 2 cut(s) 447, 448
BseGI GGATG 2 cut(s) 471, 776
BseLI CCNNNNNNNGG 1 cut(s) 313
BseRI GAGGAG 1 cut(s) 782
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 3 cut(s) 305, 336, 580
BseYI CCCAGC 1 cut(s) 99
BshFI GGCC 1 cut(s) 58
BsiSI CCGG 2 cut(s) 25, 750
BslI CCNNNNNNNGG 1 cut(s) 313
BsnI GGCC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 187
Bsp13I TCCGGA 1 cut(s) 749
Bsp143I GATC 1 cut(s) 633
BspACI CCGC 4 cut(s) 164, 167, 181, 221
BspANI GGCC 1 cut(s) 58
BspEI TCCGGA 1 cut(s) 749
BspLI GGNNCC 1 cut(s) 748
BspT104I TTCGAA 1 cut(s) 500
BspTI CTTAAG 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 447, 448
BssMI GATC 1 cut(s) 633
BssSI CACGAG 1 cut(s) 538
Bst2BI CACGAG 1 cut(s) 538
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 1 cut(s) 622
Bst6I CTCTTC 2 cut(s) 759, 804
BstAFI CTTAAG 1 cut(s) 236
BstAPI GCANNNNNTGC 2 cut(s) 191, 574
BstBI TTCGAA 1 cut(s) 500
BstC8I GCNNGC 2 cut(s) 183, 192
BstDEI CTNAG 2 cut(s) 109, 597
BstF5I GGATG 2 cut(s) 471, 776
BstKTI GATC 1 cut(s) 636
BstMBI GATC 1 cut(s) 633
BstMWI GCNNNNNNNGC 4 cut(s) 187, 191, 293, 574
BstNI CCWGG 1 cut(s) 449
BstNSI RCATGY 2 cut(s) 397, 605
BstSCI CCNGG 2 cut(s) 23, 447
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 305, 336, 580
BstV2I GAAGAC 1 cut(s) 21
BsuI GTATCC 1 cut(s) 610
BsuRI GGCC 1 cut(s) 58
BtsCI GGATG 2 cut(s) 471, 776
BtsIMutI CAGTG 1 cut(s) 499
Cac8I GCNNGC 2 cut(s) 183, 192
CaiI CAGNNNCTG 1 cut(s) 574
Cfr13I GGNCC 2 cut(s) 57, 223
Csp6I GTAC 1 cut(s) 703
CviAII CATG 3 cut(s) 245, 394, 602
CviQI GTAC 1 cut(s) 703
DdeI CTNAG 2 cut(s) 109, 597
DpnI GATC 1 cut(s) 635
DpnII GATC 1 cut(s) 633
Eam1104I CTCTTC 2 cut(s) 759, 804
EarI CTCTTC 2 cut(s) 759, 804
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 2 cut(s) 351, 649
EcoRII CCWGG 1 cut(s) 447
FaeI CATG 3 cut(s) 248, 397, 605
FaiI YATR 9 cut(s) 35, 246, 290, 395, 533, 587, 603, 640, 707
FatI CATG 3 cut(s) 244, 393, 601
FauI CCCGC 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 165, 294, 350, 569
FokI GGATG 2 cut(s) 458, 763
Fsp4HI GCNGC 4 cut(s) 165, 294, 350, 569
GluI GCNGC 4 cut(s) 165, 294, 350, 569
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 1 cut(s) 58
HapII CCGG 2 cut(s) 25, 750
Hin1II CATG 3 cut(s) 248, 397, 605
HindIII AAGCTT 2 cut(s) 77, 149
HinfI GANTC 3 cut(s) 461, 536, 770
HpaII CCGG 2 cut(s) 25, 750
Hpy166II GTNNAC 2 cut(s) 322, 391
Hpy188I TCNGA 6 cut(s) 232, 331, 555, 582, 668, 696
Hpy188III TCNNGA 3 cut(s) 52, 685, 750
Hpy8I GTNNAC 2 cut(s) 322, 391
HpyAV CCTTC 3 cut(s) 326, 701, 791
HpyCH4III ACNGT 1 cut(s) 622
HpyCH4V TGCA 4 cut(s) 4, 194, 260, 792
HpyF10VI GCNNNNNNNGC 4 cut(s) 187, 191, 293, 574
HpyF3I CTNAG 2 cut(s) 109, 597
Hsp92II CATG 3 cut(s) 248, 397, 605
Kpn2I TCCGGA 1 cut(s) 749
Kzo9I GATC 1 cut(s) 633
LmnI GCTCC 2 cut(s) 468, 752
Lsp1109I GCAGC 3 cut(s) 305, 336, 580
LweI GCATC 2 cut(s) 422, 480
MalI GATC 1 cut(s) 635
MbiI CCGCTC 1 cut(s) 181
MboI GATC 1 cut(s) 633
MboII GAAGA 6 cut(s) 21, 77, 80, 127, 601, 776
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 2 cut(s) 512, 561
MlyI GAGTC 2 cut(s) 530, 779
MmeI TCCRAC 1 cut(s) 533
MnlI CCTC 5 cut(s) 48, 133, 256, 514, 760
MroI TCCGGA 1 cut(s) 749
MseI TTAA 5 cut(s) 237, 344, 564, 624, 678
MspA1I CMGCKG 1 cut(s) 296
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 2 cut(s) 25, 750
MspR9I CCNGG 2 cut(s) 25, 449
MvaI CCWGG 1 cut(s) 449
MwoI GCNNNNNNNGC 4 cut(s) 187, 191, 293, 574
NciI CCSGG 1 cut(s) 25
NdeII GATC 1 cut(s) 633
NlaIII CATG 3 cut(s) 248, 397, 605
NlaIV GGNNCC 1 cut(s) 748
NspI RCATGY 2 cut(s) 397, 605
NspV TTCGAA 1 cut(s) 500
PasI CCCWGGG 1 cut(s) 448
PciI ACATGT 1 cut(s) 393
PfeI GAWTC 1 cut(s) 461
PkrI GCNGC 4 cut(s) 166, 295, 351, 570
PleI GAGTC 2 cut(s) 530, 778
PpsI GAGTC 2 cut(s) 530, 778
PscI ACATGT 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 447
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 748
PspPI GGNCC 2 cut(s) 57, 223
PstNI CAGNNNCTG 1 cut(s) 574
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 704
RsaNI GTAC 1 cut(s) 703
SaqAI TTAA 5 cut(s) 237, 344, 564, 624, 678
SatI GCNGC 4 cut(s) 165, 294, 350, 569
Sau3AI GATC 1 cut(s) 633
Sau96I GGNCC 2 cut(s) 57, 223
SchI GAGTC 2 cut(s) 530, 779
ScrFI CCNGG 2 cut(s) 25, 449
SduI GDGCHC 1 cut(s) 187
SfaNI GCATC 2 cut(s) 422, 480
SfuI TTCGAA 1 cut(s) 500
SinI GGWCC 1 cut(s) 223
SmlI CTYRAG 2 cut(s) 52, 236
SmoI CTYRAG 2 cut(s) 52, 236
Sse9I AATT 2 cut(s) 512, 561
SsiI CCGC 4 cut(s) 164, 167, 181, 221
StyD4I CCNGG 2 cut(s) 23, 447
TaaI ACNGT 1 cut(s) 622
TaqI TCGA 4 cut(s) 138, 436, 500, 717
TasI AATT 2 cut(s) 512, 561
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 5 cut(s) 237, 344, 564, 624, 678
Tru9I TTAA 5 cut(s) 237, 344, 564, 624, 678
TscAI CASTG 1 cut(s) 499
TseI GCWGC 3 cut(s) 293, 349, 568
TspDTI ATGAA 4 cut(s) 387, 420, 602, 633
TspGWI ACGGA 1 cut(s) 776
TspRI CASTG 1 cut(s) 499
Vha464I CTTAAG 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 223
XceI RCATGY 2 cut(s) 397, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.