Rmu_sc0004174.1_g000010

ATP10 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004174.1
OG0010232
Physical Location & Seq
Forward (+)
39242 .. 42218
2977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004174.1_g000010.1.cds

Sequence Viewer

Length: 747 bp
atgcagggcttgaagcgatttatccgatcttctatatctgcttctcaaatcttgaggcccaatgagaacaacaacaagctttatcttcttccaccaacccagcatttcttagctcaaagaacctccaatcgcttcttcgacttttacaagcttggaaataaagcggcggtagagaaagagcgggcacggcttgcagatgagctgaataggggttattttgcggacctggcagagcttaagaaacatggtggtaagattgcagaggcaaataaaatcttatttcctgctatggcagctgtaaagttccctgacttggaagtaaactactctgatggaaaagtattaaggctgccctttagacccaatggaaatgaaaatgtggctgatgcgaacatgtcagctctcccaaaggcatctttactctgcctttcatttcgagcaagttcccaggtgtcatttatagactcgtggctcttgtgtcggaaaccaattaagcagcttctgcttcggattatgaagaaacctaagcatgttgaaaacaaggatacagttaaaaggcagatcgtatattcattcggcgaccattattacttcagaaaagaacttaaaatcttgaaccttctgacagggtacatattcctgcttgataagtttggtagaataagatggcaaggctccggagtggctacggaagaggagtcatcatcccttctctcttgcacatcactactcttggaagagaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_10

Protein Analysis

248

Amino Acids

28.38

Weight (kDa)

9.76

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08220 AT1G08220
fragaria_vesca FvH4_3g30230 FvH4_3g30230 FvH4_3g30230
malus_domestica MD03G1130500.v1.1 MD11G1152100.v1.1
prunus_persica Prupe.6G115300_v2.0.a1 Prupe.6G115300_v2.0.a1
pyrus_communis pycom11g12450
rosa_chinensis RchiOBHm_Chr5g0056101
rosa_laevigata RLG00000035048
rosa_multiflora Rmu_sc0004174.1_g000010
rosa_roxburghii Rroxscaffold_1G00024200
rosa_rugosa Rorug05G0297500
rosa_samantha Rh5AG368400 Rh5BG379100 Rh5CG402300 Rh5DG391800
rosa_wichuraiana Rw0G004490 Rw5G034590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 181
AccIII TCCGGA 1 cut(s) 677
AciI CCGC 4 cut(s) 164, 167, 181, 221
AcuI CTGAAG 1 cut(s) 577
AfaI GTAC 1 cut(s) 632
AfiI CCNNNNNNNGG 1 cut(s) 313
AflII CTTAAG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 3 cut(s) 13, 536, 616
AjnI CCWGG 2 cut(s) 225, 447
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 8 cut(s) 79, 113, 151, 202, 235, 296, 401, 499
AluI AGCT 8 cut(s) 79, 113, 151, 202, 235, 296, 401, 499
AlwNI CAGNNNCTG 1 cut(s) 502
Aor13HI TCCGGA 1 cut(s) 677
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 3 cut(s) 293, 349, 496
AspS9I GGNCC 2 cut(s) 57, 223
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 187
BauI CACGAG 1 cut(s) 466
BbvI GCAGC 3 cut(s) 305, 336, 508
BccI CCATC 2 cut(s) 326, 660
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 2 cut(s) 227, 449
BciVI GTATCC 1 cut(s) 538
BfrI CTTAAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 538
BisI GCNGC 4 cut(s) 165, 294, 350, 497
BlsI GCNGC 4 cut(s) 166, 295, 351, 498
Bme1390I CCNGG 2 cut(s) 227, 449
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 57, 223
BmiI GGNNCC 1 cut(s) 676
BmrFI CCNGG 2 cut(s) 227, 449
BmsI GCATC 2 cut(s) 376, 422
Bpu10I CCTNAGC 1 cut(s) 525
BpuEI CTTGAG 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 447
BsaWI WCCGGW 1 cut(s) 677
Bsc4I CCNNNNNNNGG 1 cut(s) 313
BseAI TCCGGA 1 cut(s) 677
BseBI CCWGG 2 cut(s) 227, 449
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 1 cut(s) 704
BseLI CCNNNNNNNGG 1 cut(s) 313
BseRI GAGGAG 1 cut(s) 710
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 3 cut(s) 305, 336, 508
BseYI CCCAGC 1 cut(s) 99
BshFI GGCC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 678
BslI CCNNNNNNNGG 1 cut(s) 313
BsnI GGCC 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 187
Bsp13I TCCGGA 1 cut(s) 677
Bsp143I GATC 2 cut(s) 26, 561
BspACI CCGC 4 cut(s) 164, 167, 181, 221
BspANI GGCC 1 cut(s) 58
BspEI TCCGGA 1 cut(s) 677
BspLI GGNNCC 1 cut(s) 676
BspTI CTTAAG 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 2 cut(s) 26, 561
BssSI CACGAG 1 cut(s) 466
Bst2BI CACGAG 1 cut(s) 466
Bst2UI CCWGG 2 cut(s) 227, 449
Bst4CI ACNGT 1 cut(s) 550
Bst6I CTCTTC 2 cut(s) 687, 732
BstAFI CTTAAG 1 cut(s) 236
BstAPI GCANNNNNTGC 2 cut(s) 191, 502
BstC8I GCNNGC 2 cut(s) 183, 192
BstDEI CTNAG 2 cut(s) 109, 525
BstF5I GGATG 1 cut(s) 704
BstKTI GATC 2 cut(s) 29, 564
BstMBI GATC 2 cut(s) 26, 561
BstMWI GCNNNNNNNGC 5 cut(s) 187, 191, 227, 293, 502
BstNI CCWGG 2 cut(s) 227, 449
BstNSI RCATGY 2 cut(s) 397, 533
BstSCI CCNGG 2 cut(s) 225, 447
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 305, 336, 508
BsuI GTATCC 1 cut(s) 538
BsuRI GGCC 1 cut(s) 58
BtsCI GGATG 1 cut(s) 704
Cac8I GCNNGC 2 cut(s) 183, 192
CaiI CAGNNNCTG 1 cut(s) 502
Cfr13I GGNCC 2 cut(s) 57, 223
Csp6I GTAC 1 cut(s) 631
CviAII CATG 3 cut(s) 245, 394, 530
CviQI GTAC 1 cut(s) 631
DdeI CTNAG 2 cut(s) 109, 525
DpnI GATC 2 cut(s) 28, 563
DpnII GATC 2 cut(s) 26, 561
Eam1104I CTCTTC 2 cut(s) 687, 732
EarI CTCTTC 2 cut(s) 687, 732
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 577
EcoRII CCWGG 2 cut(s) 225, 447
FaeI CATG 3 cut(s) 248, 397, 533
FaiI YATR 9 cut(s) 35, 246, 290, 395, 461, 515, 531, 568, 635
FatI CATG 3 cut(s) 244, 393, 529
FauI CCCGC 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 165, 294, 350, 497
FokI GGATG 1 cut(s) 691
Fsp4HI GCNGC 4 cut(s) 165, 294, 350, 497
GluI GCNGC 4 cut(s) 165, 294, 350, 497
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 1 cut(s) 58
HapII CCGG 1 cut(s) 678
Hin1II CATG 3 cut(s) 248, 397, 533
HindIII AAGCTT 2 cut(s) 77, 149
HinfI GANTC 2 cut(s) 464, 698
HpaII CCGG 1 cut(s) 678
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 6 cut(s) 26, 331, 483, 510, 596, 624
Hpy188III TCNNGA 3 cut(s) 52, 613, 678
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 629, 719
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4V TGCA 4 cut(s) 4, 194, 260, 720
HpyF10VI GCNNNNNNNGC 5 cut(s) 187, 191, 227, 293, 502
HpyF3I CTNAG 2 cut(s) 109, 525
Hsp92II CATG 3 cut(s) 248, 397, 533
Kpn2I TCCGGA 1 cut(s) 677
Kzo9I GATC 2 cut(s) 26, 561
LmnI GCTCC 1 cut(s) 680
Lsp1109I GCAGC 3 cut(s) 305, 336, 508
LweI GCATC 2 cut(s) 376, 422
MalI GATC 2 cut(s) 28, 563
MbiI CCGCTC 1 cut(s) 181
MboI GATC 2 cut(s) 26, 561
MboII GAAGA 6 cut(s) 21, 77, 80, 127, 529, 704
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 1 cut(s) 489
MlyI GAGTC 2 cut(s) 458, 707
MmeI TCCRAC 1 cut(s) 461
MnlI CCTC 4 cut(s) 48, 133, 256, 688
MroI TCCGGA 1 cut(s) 677
MseI TTAA 5 cut(s) 237, 344, 492, 552, 606
MspA1I CMGCKG 1 cut(s) 296
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 1 cut(s) 678
MspR9I CCNGG 2 cut(s) 227, 449
MvaI CCWGG 2 cut(s) 227, 449
MwoI GCNNNNNNNGC 5 cut(s) 187, 191, 227, 293, 502
NdeII GATC 2 cut(s) 26, 561
NlaIII CATG 3 cut(s) 248, 397, 533
NlaIV GGNNCC 1 cut(s) 676
NspI RCATGY 2 cut(s) 397, 533
PciI ACATGT 1 cut(s) 393
PkrI GCNGC 4 cut(s) 166, 295, 351, 498
PleI GAGTC 2 cut(s) 458, 706
PpsI GAGTC 2 cut(s) 458, 706
PscI ACATGT 1 cut(s) 393
Psp6I CCWGG 2 cut(s) 225, 447
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 2 cut(s) 225, 447
PspN4I GGNNCC 1 cut(s) 676
PspPI GGNCC 2 cut(s) 57, 223
PstNI CAGNNNCTG 1 cut(s) 502
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
SaqAI TTAA 5 cut(s) 237, 344, 492, 552, 606
SatI GCNGC 4 cut(s) 165, 294, 350, 497
Sau3AI GATC 2 cut(s) 26, 561
Sau96I GGNCC 2 cut(s) 57, 223
SchI GAGTC 2 cut(s) 458, 707
ScrFI CCNGG 2 cut(s) 227, 449
SduI GDGCHC 1 cut(s) 187
SfaNI GCATC 2 cut(s) 376, 422
SinI GGWCC 1 cut(s) 223
SmlI CTYRAG 2 cut(s) 52, 236
SmoI CTYRAG 2 cut(s) 52, 236
Sse9I AATT 1 cut(s) 489
SsiI CCGC 4 cut(s) 164, 167, 181, 221
StyD4I CCNGG 2 cut(s) 225, 447
TaaI ACNGT 1 cut(s) 550
TaqI TCGA 2 cut(s) 138, 436
TasI AATT 1 cut(s) 489
TauI GCSGC 1 cut(s) 167
Tru1I TTAA 5 cut(s) 237, 344, 492, 552, 606
Tru9I TTAA 5 cut(s) 237, 344, 492, 552, 606
TseI GCWGC 3 cut(s) 293, 349, 496
TspDTI ATGAA 4 cut(s) 387, 420, 530, 561
TspGWI ACGGA 1 cut(s) 704
Vha464I CTTAAG 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 223
XceI RCATGY 2 cut(s) 397, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.