Prupe.6G115300_v2.0.a1

ATP10 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010232
Physical Location & Seq
Forward (+)
8355867 .. 8366493
10627 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G115300.1

Sequence Viewer

Length: 804 bp
ATGAAGCGCGTTACCCGATCTTCTATATATGCTTCTCAAATTTTGAGGCCCAAGGAGAACAAGGAGCTGTATCTTCTTCCACCTTCCCAGCATTTCTTAGCTCAAAGAAGCTGCAATCGCTTCTTCGACATTTACCAGCTTGGAAACAAAGAAGCTATAGAGAAAGAGCGTGCCCGGCTTGCAGATGAGTTGAATAGGGGGTATTTTGCTGATATGTCAGAGCTTAAGAAGCATGGTGGGAAGATTTCTGTGGCAAATAAAATCTTAATTCCTGCAACCGTAGCTGTTAAGTTTCCTGACTTAGAAGTGAACTACTCTGATGGCAAAATATCAAAGCTGCCCATTGGCTCCAATGGAAATGGAAATGTGGCAGCTGCCAACAAAGCGGAAATCCCCAAGGCATCTTTAGTTTGCCTTTCATTTCGAGCAAGCTCCCAGGGAATGATTCATTCTTGGAGTGCTCCTTTTCTTGATGCTTTTAGTGGTTCAAGGGATGTTCAATTCTATGAGGTGTCATTAATAGACTCGTGGTTCTTATGTCGGAGTCCAATTAAGAAGTTGCTGCTCAGGATTATGAGGAAATCTAAGCATGATGAAAGTAATGAACCTAAAAGGCAAATCGTATATTCGTTTGGTGACCACTACTACTTCAGAAAAGAACTTAAAATACTGAACCTTCTGACCGGGTATATATTCCTGCTCGATAAATTTGGTAGAATAAGATGGCAAGGCTCTGGATTGGCTACGGAAGAGGAGTCGTCATCCCTTTTATCTTGCGCAAAACTGCTCTTGGAAGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_10

Protein Analysis

268

Amino Acids

30.35

Weight (kDa)

9.48

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08220 AT1G08220
fragaria_vesca FvH4_3g30230 FvH4_3g30230 FvH4_3g30230
malus_domestica MD03G1130500.v1.1 MD11G1152100.v1.1
prunus_persica Prupe.6G115300_v2.0.a1 Prupe.6G115300_v2.0.a1
pyrus_communis pycom11g12450
rosa_chinensis RchiOBHm_Chr5g0056101
rosa_laevigata RLG00000035048
rosa_multiflora Rmu_sc0004174.1_g000010
rosa_roxburghii Rroxscaffold_1G00024200
rosa_rugosa Rorug05G0297500
rosa_samantha Rh5AG368400 Rh5BG379100 Rh5CG402300 Rh5DG391800
rosa_wichuraiana Rw0G004490 Rw5G034590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 778
AccII CGCG 1 cut(s) 9
AciI CCGC 1 cut(s) 386
AcsI RAATTY 2 cut(s) 39, 707
AcuI CTGAAG 1 cut(s) 634
AflII CTTAAG 1 cut(s) 224
AgsI TTSAA 3 cut(s) 193, 489, 500
AjnI CCWGG 1 cut(s) 435
Alw21I GWGCWC 1 cut(s) 463
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 5 cut(s) 111, 337, 371, 374, 562
ApoI RAATTY 2 cut(s) 39, 707
AseI ATTAAT 1 cut(s) 518
AspLEI GCGC 2 cut(s) 9, 779
AspS9I GGNCC 1 cut(s) 48
AsuC2I CCSGG 2 cut(s) 175, 685
AsuHPI GGTGA 1 cut(s) 647
BaeGI GKGCMC 1 cut(s) 175
BauI CACGAG 1 cut(s) 526
Bbv12I GWGCWC 1 cut(s) 463
BbvI GCAGC 5 cut(s) 98, 324, 361, 383, 549
BccI CCATC 2 cut(s) 314, 717
BciT130I CCWGG 1 cut(s) 437
BcnI CCSGG 2 cut(s) 175, 685
BfmI CTRYAG 1 cut(s) 156
BfrI CTTAAG 1 cut(s) 224
BisI GCNGC 5 cut(s) 112, 338, 372, 375, 563
BlsI GCNGC 5 cut(s) 113, 339, 373, 376, 564
Bme1390I CCNGG 3 cut(s) 175, 437, 685
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 3 cut(s) 175, 437, 685
BmsI GCATC 2 cut(s) 410, 463
Bpu10I CCTNAGC 1 cut(s) 566
BpuMI CCSGG 2 cut(s) 175, 685
BsaJI CCNNGG 4 cut(s) 51, 396, 435, 436
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 4 cut(s) 51, 396, 435, 436
BseGI GGATG 2 cut(s) 499, 761
BseMII CTCAG 1 cut(s) 580
BseRI GAGGAG 1 cut(s) 767
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 5 cut(s) 98, 324, 361, 383, 549
BseYI CCCAGC 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 463
BsiSI CCGG 2 cut(s) 175, 684
BsnI GGCC 1 cut(s) 49
Bsp1286I GDGCHC 2 cut(s) 175, 463
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 1 cut(s) 386
BspANI GGCC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 579
BspFNI CGCG 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 349
BspTI CTTAAG 1 cut(s) 224
BssECI CCNNGG 4 cut(s) 51, 396, 435, 436
BssMI GATC 1 cut(s) 17
BssSI CACGAG 1 cut(s) 526
BssT1I CCWWGG 2 cut(s) 51, 396
Bst2BI CACGAG 1 cut(s) 526
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 744
BstAFI CTTAAG 1 cut(s) 224
BstC8I GCNNGC 3 cut(s) 171, 180, 430
BstDEI CTNAG 4 cut(s) 97, 301, 566, 585
BstEII GGTNACC 1 cut(s) 635
BstF5I GGATG 2 cut(s) 499, 761
BstFNI CGCG 1 cut(s) 9
BstHHI GCGC 2 cut(s) 9, 779
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstMWI GCNNNNNNNGC 6 cut(s) 117, 175, 179, 229, 281, 383
BstNI CCWGG 1 cut(s) 437
BstPI GGTNACC 1 cut(s) 635
BstSCI CCNGG 3 cut(s) 173, 435, 683
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 175
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 5 cut(s) 98, 324, 361, 383, 549
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 2 cut(s) 499, 761
Cac8I GCNNGC 3 cut(s) 171, 180, 430
CfoI GCGC 2 cut(s) 9, 779
Cfr13I GGNCC 1 cut(s) 48
CviAII CATG 2 cut(s) 233, 590
DdeI CTNAG 4 cut(s) 97, 301, 566, 585
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 744
EarI CTCTTC 1 cut(s) 744
Eco130I CCWWGG 2 cut(s) 51, 396
Eco57I CTGAAG 1 cut(s) 634
Eco91I GGTNACC 1 cut(s) 635
EcoO65I GGTNACC 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 2 cut(s) 51, 396
ErhI CCWWGG 2 cut(s) 51, 396
FaeI CATG 2 cut(s) 236, 593
FatI CATG 2 cut(s) 232, 589
Fnu4HI GCNGC 5 cut(s) 112, 338, 372, 375, 563
FokI GGATG 2 cut(s) 506, 748
Fsp4HI GCNGC 5 cut(s) 112, 338, 372, 375, 563
FspI TGCGCA 1 cut(s) 778
GlaI GCGC 2 cut(s) 8, 778
GluI GCNGC 5 cut(s) 112, 338, 372, 375, 563
GsaI CCCAGC 1 cut(s) 91
HaeIII GGCC 1 cut(s) 49
HapII CCGG 2 cut(s) 175, 684
HhaI GCGC 2 cut(s) 9, 779
Hin1II CATG 2 cut(s) 236, 593
Hin6I GCGC 2 cut(s) 7, 777
HinP1I GCGC 2 cut(s) 7, 777
HinfI GANTC 4 cut(s) 445, 524, 544, 755
HpaII CCGG 2 cut(s) 175, 684
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 5 cut(s) 220, 319, 543, 653, 681
Hpy188III TCNNGA 4 cut(s) 296, 470, 568, 735
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 2 cut(s) 93, 686
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 3 cut(s) 114, 182, 275
HpyF10VI GCNNNNNNNGC 6 cut(s) 117, 175, 179, 229, 281, 383
HpyF3I CTNAG 4 cut(s) 97, 301, 566, 585
Hsp92II CATG 2 cut(s) 236, 593
HspAI GCGC 2 cut(s) 7, 777
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 4 cut(s) 64, 353, 437, 466
Lsp1109I GCAGC 5 cut(s) 98, 324, 361, 383, 549
LweI GCATC 2 cut(s) 410, 463
MaeIII GTNAC 2 cut(s) 10, 635
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 6 cut(s) 12, 65, 68, 115, 253, 761
MhlI GDGCHC 2 cut(s) 175, 463
MluCI AATT 5 cut(s) 39, 267, 500, 549, 707
MlyI GAGTC 3 cut(s) 518, 553, 764
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 4 cut(s) 39, 502, 570, 745
MseI TTAA 6 cut(s) 225, 266, 288, 518, 552, 663
MspA1I CMGCKG 1 cut(s) 374
MspCI CTTAAG 1 cut(s) 224
MspI CCGG 2 cut(s) 175, 684
MspR9I CCNGG 3 cut(s) 175, 437, 685
MvaI CCWGG 1 cut(s) 437
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 6 cut(s) 117, 175, 179, 229, 281, 383
NciI CCSGG 2 cut(s) 175, 685
NdeII GATC 1 cut(s) 17
NlaIII CATG 2 cut(s) 236, 593
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 635
NsbI TGCGCA 1 cut(s) 778
PasI CCCWGGG 1 cut(s) 436
PfeI GAWTC 1 cut(s) 445
PkrI GCNGC 5 cut(s) 113, 339, 373, 376, 564
PleI GAGTC 3 cut(s) 518, 552, 763
PpsI GAGTC 3 cut(s) 518, 552, 763
PshBI ATTAAT 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 435
PspEI GGTNACC 1 cut(s) 635
PspFI CCCAGC 1 cut(s) 87
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 48
PsrI GAACNNNNNNTAC 2 cut(s) 651, 683
PvuII CAGCTG 1 cut(s) 374
SaqAI TTAA 6 cut(s) 225, 266, 288, 518, 552, 663
SatI GCNGC 5 cut(s) 112, 338, 372, 375, 563
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 48
SchI GAGTC 3 cut(s) 518, 553, 764
ScrFI CCNGG 3 cut(s) 175, 437, 685
SduI GDGCHC 2 cut(s) 175, 463
SfaNI GCATC 2 cut(s) 410, 463
SfcI CTRYAG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 5 cut(s) 39, 267, 500, 549, 707
SsiI CCGC 1 cut(s) 386
StyD4I CCNGG 3 cut(s) 173, 435, 683
StyI CCWWGG 2 cut(s) 51, 396
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 3 cut(s) 126, 424, 702
TasI AATT 5 cut(s) 39, 267, 500, 549, 707
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 6 cut(s) 225, 266, 288, 518, 552, 663
Tru9I TTAA 6 cut(s) 225, 266, 288, 518, 552, 663
TseFI GTSAC 1 cut(s) 635
TseI GCWGC 5 cut(s) 111, 337, 371, 374, 562
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 5 cut(s) 17, 408, 437, 609, 618
TspGWI ACGGA 1 cut(s) 761
Vha464I CTTAAG 1 cut(s) 224
VspI ATTAAT 1 cut(s) 518
XapI RAATTY 2 cut(s) 39, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.