pycom11g12450

ATP10 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010232
Physical Location & Seq
Forward (+)
11365361 .. 11368362
3002 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g12450.2

Sequence Viewer

Length: 804 bp
ATGAGCCGATTCAGCCGAGCTTCCATATTTGCTTCCCAAATCTTGAGGCCCATTGAGAGCAAGAAGCAGCATCTTCTTCCAGCTTCCCAGCATTTCTTAGTTCAAAGAAGCTCCAATCGTTTCTTCGACATTTACAAGCTTGGAAACAAAGCAGCTATAGAGAAAGAGCGTGCCCGGCTTGCAGATGAGTTGAATAGGGGATATTTTGCTGATATGTCAGAGCTTGAAAAACATGGTGGGAAGATTTCTGTGGCAAATAAAACCATAGTTCCTGCAACTGCAGCGGTAAAGTTTCCTGACTTAGAAGTTAACTACTCTGATGGAAAAATATTAAAGCTTCCCGTTAGCTCCAATGGGAATGGAAATGTCACTGAAGTCAACAAATTGGAAACCCCCAAGGCTTCTTTAGTTTGCCTTTCATTTCGAGCAAGCTCCCAGGGAATGATTAATTCTTGGAGCGCCCCTTTTTGTGATGCTTTTAGTGGTTCCAAGGATGTTCAACTATACGAGGTATCATTAATAGACTCATGGTTCTTATGTCGGAGTCCAATTAAGAAGCTTTTGCTCCGGATTATGAGGAAACCAAAGCATGATGAAAGCACTGAACCTAAAAGGCAGATTGTATATTCATTTGGTGACCATTATTACTTCAGAAAAGAACTTAAAGTACTGAACCTTCTGACCGGGTATATATTCCTGCTCGATAAATTTGGTAGAATAAGATGGCAAGGCACTGGATTGGCTACGGAAGAGGAGTCGTCATCCCTTCTTTCGTGCACGAAACTGCTCTTGGAAGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_10

Protein Analysis

268

Amino Acids

30.27

Weight (kDa)

9.45

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08220 AT1G08220
fragaria_vesca FvH4_3g30230 FvH4_3g30230 FvH4_3g30230
malus_domestica MD03G1130500.v1.1 MD11G1152100.v1.1
prunus_persica Prupe.6G115300_v2.0.a1 Prupe.6G115300_v2.0.a1
pyrus_communis pycom11g12450
rosa_chinensis RchiOBHm_Chr5g0056101
rosa_laevigata RLG00000035048
rosa_multiflora Rmu_sc0004174.1_g000010
rosa_roxburghii Rroxscaffold_1G00024200
rosa_rugosa Rorug05G0297500
rosa_samantha Rh5AG368400 Rh5BG379100 Rh5CG402300 Rh5DG391800
rosa_wichuraiana Rw0G004490 Rw5G034590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 567
AciI CCGC 1 cut(s) 284
AcsI RAATTY 1 cut(s) 707
AcuI CTGAAG 2 cut(s) 393, 634
AfaI GTAC 1 cut(s) 669
AgsI TTSAA 4 cut(s) 104, 193, 227, 500
AjnI CCWGG 1 cut(s) 435
AjuI GAANNNNNNNTTGG 3 cut(s) 107, 139, 773
Alw21I GWGCWC 1 cut(s) 779
Alw44I GTGCAC 1 cut(s) 775
Aor13HI TCCGGA 1 cut(s) 567
AoxI GGCC 1 cut(s) 47
ApaLI GTGCAC 1 cut(s) 775
ApeKI GCWGC 3 cut(s) 67, 152, 281
ApoI RAATTY 1 cut(s) 707
AseI ATTAAT 2 cut(s) 447, 518
AspLEI GCGC 1 cut(s) 461
AspS9I GGNCC 1 cut(s) 48
AsuC2I CCSGG 2 cut(s) 175, 685
AsuHPI GGTGA 1 cut(s) 647
BaeGI GKGCMC 2 cut(s) 175, 779
BarI GAAGNNNNNNTAC 2 cut(s) 660, 692
Bbv12I GWGCWC 1 cut(s) 779
BbvI GCAGC 3 cut(s) 79, 164, 293
BccI CCATC 2 cut(s) 314, 717
BciT130I CCWGG 1 cut(s) 437
BcnI CCSGG 2 cut(s) 175, 685
BfmI CTRYAG 2 cut(s) 156, 279
BfoI RGCGCY 1 cut(s) 462
BisI GCNGC 3 cut(s) 68, 153, 282
BlsI GCNGC 3 cut(s) 69, 154, 283
BmcAI AGTACT 1 cut(s) 669
Bme1390I CCNGG 3 cut(s) 175, 437, 685
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 487
BmrFI CCNGG 3 cut(s) 175, 437, 685
BmsI GCATC 2 cut(s) 79, 463
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 2 cut(s) 175, 685
BsaJI CCNNGG 4 cut(s) 396, 435, 436, 489
BsaWI WCCGGW 1 cut(s) 567
Bse1I ACTGG 1 cut(s) 739
BseAI TCCGGA 1 cut(s) 567
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 4 cut(s) 396, 435, 436, 489
BseGI GGATG 2 cut(s) 499, 761
BseNI ACTGG 1 cut(s) 739
BseRI GAGGAG 1 cut(s) 767
BseSI GKGCMC 2 cut(s) 175, 779
BseXI GCAGC 3 cut(s) 79, 164, 293
BseYI CCCAGC 1 cut(s) 87
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 779
BsiSI CCGG 3 cut(s) 175, 568, 684
BsnI GGCC 1 cut(s) 49
Bsp1286I GDGCHC 2 cut(s) 175, 779
Bsp13I TCCGGA 1 cut(s) 567
BspACI CCGC 1 cut(s) 284
BspANI GGCC 1 cut(s) 49
BspEI TCCGGA 1 cut(s) 567
BspLI GGNNCC 1 cut(s) 487
BspMAI CTGCAG 1 cut(s) 283
BsrI ACTGG 1 cut(s) 739
BssECI CCNNGG 4 cut(s) 396, 435, 436, 489
BssT1I CCWWGG 2 cut(s) 396, 489
Bst2UI CCWGG 1 cut(s) 437
Bst6I CTCTTC 2 cut(s) 744, 789
BstC8I GCNNGC 3 cut(s) 171, 180, 430
BstDEI CTNAG 2 cut(s) 97, 301
BstEII GGTNACC 1 cut(s) 635
BstF5I GGATG 2 cut(s) 499, 761
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 1 cut(s) 461
BstMWI GCNNNNNNNGC 4 cut(s) 12, 175, 179, 281
BstNI CCWGG 1 cut(s) 437
BstPI GGTNACC 1 cut(s) 635
BstSCI CCNGG 3 cut(s) 173, 435, 683
BstSFI CTRYAG 2 cut(s) 156, 279
BstSLI GKGCMC 2 cut(s) 175, 779
BstV1I GCAGC 3 cut(s) 79, 164, 293
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 2 cut(s) 499, 761
BtsIMutI CAGTG 3 cut(s) 369, 600, 732
Cac8I GCNNGC 3 cut(s) 171, 180, 430
CfoI GCGC 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 668
CviAII CATG 3 cut(s) 233, 528, 590
CviQI GTAC 1 cut(s) 668
DdeI CTNAG 2 cut(s) 97, 301
Eam1104I CTCTTC 2 cut(s) 744, 789
EarI CTCTTC 2 cut(s) 744, 789
Eco130I CCWWGG 2 cut(s) 396, 489
Eco57I CTGAAG 2 cut(s) 393, 634
Eco91I GGTNACC 1 cut(s) 635
EcoO65I GGTNACC 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 2 cut(s) 396, 489
ErhI CCWWGG 2 cut(s) 396, 489
FaeI CATG 3 cut(s) 236, 531, 593
FatI CATG 3 cut(s) 232, 527, 589
Fnu4HI GCNGC 3 cut(s) 68, 153, 282
FokI GGATG 2 cut(s) 506, 748
Fsp4HI GCNGC 3 cut(s) 68, 153, 282
GlaI GCGC 1 cut(s) 460
GluI GCNGC 3 cut(s) 68, 153, 282
GsaI CCCAGC 1 cut(s) 91
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 1 cut(s) 49
HapII CCGG 3 cut(s) 175, 568, 684
HhaI GCGC 1 cut(s) 461
Hin1II CATG 3 cut(s) 236, 531, 593
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HincII GTYRAC 2 cut(s) 310, 379
HindII GTYRAC 2 cut(s) 310, 379
HindIII AAGCTT 3 cut(s) 137, 335, 557
HinfI GANTC 4 cut(s) 9, 524, 544, 755
HpaI GTTAAC 1 cut(s) 310
HpaII CCGG 3 cut(s) 175, 568, 684
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 3 cut(s) 310, 379, 777
Hpy188I TCNGA 5 cut(s) 220, 319, 543, 653, 681
Hpy188III TCNNGA 3 cut(s) 43, 296, 568
Hpy8I GTNNAC 3 cut(s) 310, 379, 777
HpyAV CCTTC 2 cut(s) 686, 776
HpyCH4V TGCA 4 cut(s) 182, 275, 281, 777
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 175, 179, 281
HpyF3I CTNAG 2 cut(s) 97, 301
Hsp92II CATG 3 cut(s) 236, 531, 593
HspAI GCGC 1 cut(s) 459
Kpn2I TCCGGA 1 cut(s) 567
KspAI GTTAAC 1 cut(s) 310
LmnI GCTCC 5 cut(s) 116, 353, 437, 456, 570
Lsp1109I GCAGC 3 cut(s) 79, 164, 293
LweI GCATC 2 cut(s) 79, 463
MaeIII GTNAC 2 cut(s) 367, 635
MboII GAAGA 5 cut(s) 65, 68, 115, 253, 761
MhlI GDGCHC 2 cut(s) 175, 779
MluCI AATT 4 cut(s) 383, 448, 549, 707
MlyI GAGTC 3 cut(s) 518, 553, 764
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 4 cut(s) 39, 502, 570, 745
MroI TCCGGA 1 cut(s) 567
MseI TTAA 6 cut(s) 309, 332, 447, 518, 552, 663
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 3 cut(s) 175, 568, 684
MspR9I CCNGG 3 cut(s) 175, 437, 685
MvaI CCWGG 1 cut(s) 437
MwoI GCNNNNNNNGC 4 cut(s) 12, 175, 179, 281
NciI CCSGG 2 cut(s) 175, 685
NlaIII CATG 3 cut(s) 236, 531, 593
NlaIV GGNNCC 1 cut(s) 487
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 2 cut(s) 367, 635
PasI CCCWGGG 1 cut(s) 436
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 3 cut(s) 69, 154, 283
PleI GAGTC 3 cut(s) 518, 552, 763
PpsI GAGTC 3 cut(s) 518, 552, 763
PshBI ATTAAT 2 cut(s) 447, 518
Psp6I CCWGG 1 cut(s) 435
PspEI GGTNACC 1 cut(s) 635
PspFI CCCAGC 1 cut(s) 87
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 487
PspPI GGNCC 1 cut(s) 48
PsrI GAACNNNNNNTAC 2 cut(s) 651, 683
PstI CTGCAG 1 cut(s) 283
RsaI GTAC 1 cut(s) 669
RsaNI GTAC 1 cut(s) 668
SaqAI TTAA 6 cut(s) 309, 332, 447, 518, 552, 663
SatI GCNGC 3 cut(s) 68, 153, 282
Sau96I GGNCC 1 cut(s) 48
ScaI AGTACT 1 cut(s) 669
SchI GAGTC 3 cut(s) 518, 553, 764
ScrFI CCNGG 3 cut(s) 175, 437, 685
SduI GDGCHC 2 cut(s) 175, 779
SfaNI GCATC 2 cut(s) 79, 463
SfcI CTRYAG 2 cut(s) 156, 279
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 4 cut(s) 383, 448, 549, 707
SsiI CCGC 1 cut(s) 284
SspI AATATT 1 cut(s) 330
StyD4I CCNGG 3 cut(s) 173, 435, 683
StyI CCWWGG 2 cut(s) 396, 489
TaqI TCGA 3 cut(s) 126, 424, 702
TasI AATT 4 cut(s) 383, 448, 549, 707
TatI WGTACW 1 cut(s) 667
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 6 cut(s) 309, 332, 447, 518, 552, 663
Tru9I TTAA 6 cut(s) 309, 332, 447, 518, 552, 663
TscAI CASTG 3 cut(s) 376, 607, 739
TseFI GTSAC 2 cut(s) 367, 635
TseI GCWGC 3 cut(s) 67, 152, 281
Tsp45I GTSAC 2 cut(s) 367, 635
TspDTI ATGAA 3 cut(s) 408, 609, 618
TspGWI ACGGA 1 cut(s) 761
TspRI CASTG 3 cut(s) 376, 607, 739
VneI GTGCAC 1 cut(s) 775
VspI ATTAAT 2 cut(s) 447, 518
XapI RAATTY 1 cut(s) 707
ZrmI AGTACT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.