Rh5CG402300

ATP10 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010232
Physical Location & Seq
Reverse (-)
53545478 .. 53549452
3975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG402300.1

Sequence Viewer

Length: 591 bp
ATGCAGGGCTTGAAGCGATTTACCCGGTCTTCTATATCTGCTTCTCAAATCTTGAGGCCCAATGAGAACAACAACAAGCTTTATCTTCTTCCACCAACCCAGCATTTCTTAGCTCAAAGAACCTCCAATCGCTTCTTCGACTTTTACAAGCTTGGAAATAAAGCGGCGGTAGAGAAAGAGCGGGCACGGCTTGCAGATGAGCTGAATAGGGGTTATTTTGCGGACCTGTCAGAGCTTAAGAAACATGGTGGTAAGATTGCAGAGGCAAATAAAATCCTATTTCCTGCTATGGCAGCTGTAAAGTTCCCTGACTTGGAAGTAAACTACTCTGAAGGAAAAGTATTAAGGCTGCCCTTTAGACCCAATGGAAATGAAAATGTGGCTGATGTGAACATGTCAGCTCTCCCAAAGGCATCTTTACTCTGCCTTTCATTTCGAGCAAGTTCCCAGGGAATGATTGATTCTTGGAGCATCCCTTTTGTCAATGCTTTCAGTGGTTCGAAAGACATTCAATTATTTGAGGTATGTGATTACATGTATACCATCTTTGGTTCAAGTAGTTATATGTCGCCACATTTAATGCTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_10

Protein Analysis

196

Amino Acids

22.1

Weight (kDa)

9.34

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_10 PF05176 37 - 158 3.6e-13 ATP10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08220 AT1G08220
fragaria_vesca FvH4_3g30230 FvH4_3g30230 FvH4_3g30230
malus_domestica MD03G1130500.v1.1 MD11G1152100.v1.1
prunus_persica Prupe.6G115300_v2.0.a1 Prupe.6G115300_v2.0.a1
pyrus_communis pycom11g12450
rosa_chinensis RchiOBHm_Chr5g0056101
rosa_laevigata RLG00000035048
rosa_multiflora Rmu_sc0004174.1_g000010
rosa_roxburghii Rroxscaffold_1G00024200
rosa_rugosa Rorug05G0297500
rosa_samantha Rh5AG368400 Rh5BG379100 Rh5CG402300 Rh5DG391800
rosa_wichuraiana Rw0G004490 Rw5G034590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 181
AccI GTMKAC 1 cut(s) 539
AciI CCGC 4 cut(s) 164, 167, 181, 221
AcuI CTGAAG 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 313
AflII CTTAAG 1 cut(s) 236
AflIII ACRYGT 2 cut(s) 393, 534
AgsI TTSAA 3 cut(s) 13, 512, 555
AjnI CCWGG 1 cut(s) 447
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 7 cut(s) 79, 113, 151, 202, 235, 296, 401
AluI AGCT 7 cut(s) 79, 113, 151, 202, 235, 296, 401
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 2 cut(s) 293, 349
AspS9I GGNCC 2 cut(s) 57, 223
AsuC2I CCSGG 1 cut(s) 25
AsuII TTCGAA 1 cut(s) 500
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 305, 336
BccI CCATC 1 cut(s) 551
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 449
BcnI CCSGG 1 cut(s) 25
BfrI CTTAAG 1 cut(s) 236
BisI GCNGC 3 cut(s) 165, 294, 350
BlsI GCNGC 3 cut(s) 166, 295, 351
Bme1390I CCNGG 2 cut(s) 25, 449
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 57, 223
BmrFI CCNGG 2 cut(s) 25, 449
BmsI GCATC 2 cut(s) 422, 480
BpiI GAAGAC 1 cut(s) 21
Bpu14I TTCGAA 1 cut(s) 500
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 447, 448
Bsc4I CCNNNNNNNGG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 2 cut(s) 447, 448
BseGI GGATG 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 313
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 2 cut(s) 305, 336
BseYI CCCAGC 1 cut(s) 99
BshFI GGCC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 313
BsnI GGCC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 187
BspACI CCGC 4 cut(s) 164, 167, 181, 221
BspANI GGCC 1 cut(s) 58
BspT104I TTCGAA 1 cut(s) 500
BspTI CTTAAG 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 447, 448
BssNAI GTATAC 1 cut(s) 540
Bst1107I GTATAC 1 cut(s) 540
Bst2UI CCWGG 1 cut(s) 449
BstAFI CTTAAG 1 cut(s) 236
BstAPI GCANNNNNTGC 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 500
BstC8I GCNNGC 2 cut(s) 183, 192
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 471
BstMWI GCNNNNNNNGC 3 cut(s) 187, 191, 293
BstNI CCWGG 1 cut(s) 449
BstNSI RCATGY 2 cut(s) 397, 538
BstSCI CCNGG 2 cut(s) 23, 447
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 305, 336
BstV2I GAAGAC 1 cut(s) 21
BstZ17I GTATAC 1 cut(s) 540
BsuRI GGCC 1 cut(s) 58
BtsCI GGATG 1 cut(s) 471
BtsIMutI CAGTG 1 cut(s) 499
Cac8I GCNNGC 2 cut(s) 183, 192
Cfr13I GGNCC 2 cut(s) 57, 223
CviAII CATG 3 cut(s) 245, 394, 535
DdeI CTNAG 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 447
FaeI CATG 3 cut(s) 248, 397, 538
FaiI YATR 9 cut(s) 35, 246, 290, 395, 526, 536, 540, 564, 566
FatI CATG 3 cut(s) 244, 393, 534
FauI CCCGC 1 cut(s) 174
FblI GTMKAC 1 cut(s) 539
Fnu4HI GCNGC 3 cut(s) 165, 294, 350
FokI GGATG 1 cut(s) 458
Fsp4HI GCNGC 3 cut(s) 165, 294, 350
GluI GCNGC 3 cut(s) 165, 294, 350
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 1 cut(s) 58
HapII CCGG 1 cut(s) 25
Hin1II CATG 3 cut(s) 248, 397, 538
HindIII AAGCTT 2 cut(s) 77, 149
HinfI GANTC 1 cut(s) 461
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 3 cut(s) 322, 391, 540
Hpy188I TCNGA 2 cut(s) 232, 331
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 3 cut(s) 322, 391, 540
HpyAV CCTTC 1 cut(s) 326
HpyCH4V TGCA 3 cut(s) 4, 194, 260
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 191, 293
HpyF3I CTNAG 1 cut(s) 109
Hsp92II CATG 3 cut(s) 248, 397, 538
LmnI GCTCC 1 cut(s) 468
LpnPI CCDG 7 cut(s) 38, 113, 239, 297, 321, 434, 461
Lsp1109I GCAGC 2 cut(s) 305, 336
LweI GCATC 2 cut(s) 422, 480
MbiI CCGCTC 1 cut(s) 181
MboII GAAGA 4 cut(s) 21, 77, 80, 127
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 1 cut(s) 512
MnlI CCTC 4 cut(s) 48, 133, 256, 514
MseI TTAA 3 cut(s) 237, 344, 578
MspA1I CMGCKG 1 cut(s) 296
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 2 cut(s) 25, 449
MvaI CCWGG 1 cut(s) 449
MwoI GCNNNNNNNGC 3 cut(s) 187, 191, 293
NciI CCSGG 1 cut(s) 25
NlaIII CATG 3 cut(s) 248, 397, 538
NspI RCATGY 2 cut(s) 397, 538
NspV TTCGAA 1 cut(s) 500
PasI CCCWGGG 1 cut(s) 448
PciI ACATGT 2 cut(s) 393, 534
PfeI GAWTC 1 cut(s) 461
PkrI GCNGC 3 cut(s) 166, 295, 351
PscI ACATGT 2 cut(s) 393, 534
Psp6I CCWGG 1 cut(s) 447
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 447
PspPI GGNCC 2 cut(s) 57, 223
PvuII CAGCTG 1 cut(s) 296
SaqAI TTAA 3 cut(s) 237, 344, 578
SatI GCNGC 3 cut(s) 165, 294, 350
Sau96I GGNCC 2 cut(s) 57, 223
ScrFI CCNGG 2 cut(s) 25, 449
SduI GDGCHC 1 cut(s) 187
SfaNI GCATC 2 cut(s) 422, 480
SfuI TTCGAA 1 cut(s) 500
SinI GGWCC 1 cut(s) 223
SmlI CTYRAG 2 cut(s) 52, 236
SmoI CTYRAG 2 cut(s) 52, 236
Sse9I AATT 1 cut(s) 512
SsiI CCGC 4 cut(s) 164, 167, 181, 221
StyD4I CCNGG 2 cut(s) 23, 447
TaqI TCGA 3 cut(s) 138, 436, 500
TasI AATT 1 cut(s) 512
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 3 cut(s) 237, 344, 578
Tru9I TTAA 3 cut(s) 237, 344, 578
TscAI CASTG 1 cut(s) 499
TseI GCWGC 2 cut(s) 293, 349
TspDTI ATGAA 2 cut(s) 387, 420
TspRI CASTG 1 cut(s) 499
Vha464I CTTAAG 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 223
XceI RCATGY 2 cut(s) 397, 538
XmiI GTMKAC 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.