Rw5G034590

ATP10 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0010232
Physical Location & Seq
Reverse (-)
59572504 .. 59575977
3474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G034590.1

Sequence Viewer

Length: 819 bp
ATGCAGGGCTTGAAGCGATTTATCCGATCTTCTATATCTGCTTCTCAAATCTTGAGGCCCAATGAGAACAACAACAAGCTTTATCTTCTTCCACCAACCCAGCATTTCTTAGCTCAAAGAACCTCCAATCGCTTCTTCGACTTTTACAAGCTTGGAAATAAAGCGGCGGTAGAGAAAGAGCGGGCACGGCTTGCAGATGAGCTGAATAGGGGTTATTTTGCGGACCTGTCAGAGCTTAAGAAACATGGTGGTAAGATTGCAGAGGCAAATAAAATCTTATTTCCTGCTATGGCAGCTGTAAAGTTCCCTGACTTGGAAGTAAACTACTCTGATGGAAAAGTATTAAGGCTGCCCTTTAGACCCAATGGAAATGAAAATGTGGCTGATGCGAACATGTCAGCTCTCCCAAAGGCATCTTTACTCTGCCTTTCATTTCGAGCAAGTTCCCAGGGAATGATTGATTCTTGGAGCATCCCTTTTGTCGATGCTTTCAGTGGTTCGAAAGACATTCAATTACTTGAGGTGTCATTTATAGACTCGTGGCTCTTGTGTCGGAAACCAATTAAGCAGCTTCTGCTTCGGATTATGAAGAAACCTAAGCATGTTGAAAACAAGGATACAGTTAAAAGGCAGATCGTATATTCATTCGGCGACCATTATTACTTCAGAAAAGAACTTAAAATCTTGAACCTTCTGACAGGGTACATATTCCTGCTCGATAAGTTTGGTAGAATAAGATGGCAAGGCTCCGGAGTGGCTACGGAAGAGGAGTCATCATCCCTTCTCTCTTGCACATCACTACTCTTGGAAGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_10

Protein Analysis

272

Amino Acids

31.03

Weight (kDa)

9.56

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_10 PF05176 38 - 267 6.8e-35 ATP10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08220 AT1G08220
fragaria_vesca FvH4_3g30230 FvH4_3g30230 FvH4_3g30230
malus_domestica MD03G1130500.v1.1 MD11G1152100.v1.1
prunus_persica Prupe.6G115300_v2.0.a1 Prupe.6G115300_v2.0.a1
pyrus_communis pycom11g12450
rosa_chinensis RchiOBHm_Chr5g0056101
rosa_laevigata RLG00000035048
rosa_multiflora Rmu_sc0004174.1_g000010
rosa_roxburghii Rroxscaffold_1G00024200
rosa_rugosa Rorug05G0297500
rosa_samantha Rh5AG368400 Rh5BG379100 Rh5CG402300 Rh5DG391800
rosa_wichuraiana Rw0G004490 Rw5G034590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 181
AccIII TCCGGA 1 cut(s) 749
AciI CCGC 4 cut(s) 164, 167, 181, 221
AcuI CTGAAG 1 cut(s) 649
AfaI GTAC 1 cut(s) 704
AfiI CCNNNNNNNGG 1 cut(s) 313
AflII CTTAAG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 4 cut(s) 13, 512, 608, 688
AjnI CCWGG 1 cut(s) 447
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 8 cut(s) 79, 113, 151, 202, 235, 296, 401, 571
AluI AGCT 8 cut(s) 79, 113, 151, 202, 235, 296, 401, 571
AlwNI CAGNNNCTG 1 cut(s) 574
Aor13HI TCCGGA 1 cut(s) 749
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 3 cut(s) 293, 349, 568
AspS9I GGNCC 2 cut(s) 57, 223
AsuII TTCGAA 1 cut(s) 500
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 187
BauI CACGAG 1 cut(s) 538
BbvI GCAGC 3 cut(s) 305, 336, 580
BccI CCATC 2 cut(s) 326, 732
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 449
BciVI GTATCC 1 cut(s) 610
BfrI CTTAAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 610
BisI GCNGC 4 cut(s) 165, 294, 350, 569
BlsI GCNGC 4 cut(s) 166, 295, 351, 570
Bme1390I CCNGG 1 cut(s) 449
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 57, 223
BmiI GGNNCC 1 cut(s) 748
BmrFI CCNGG 1 cut(s) 449
BmsI GCATC 4 cut(s) 376, 422, 475, 480
Bpu10I CCTNAGC 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 500
BpuEI CTTGAG 2 cut(s) 73, 539
BsaJI CCNNGG 2 cut(s) 447, 448
BsaWI WCCGGW 1 cut(s) 749
Bsc4I CCNNNNNNNGG 1 cut(s) 313
BseAI TCCGGA 1 cut(s) 749
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 2 cut(s) 447, 448
BseGI GGATG 2 cut(s) 471, 776
BseLI CCNNNNNNNGG 1 cut(s) 313
BseRI GAGGAG 1 cut(s) 782
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 3 cut(s) 305, 336, 580
BseYI CCCAGC 1 cut(s) 99
BshFI GGCC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 750
BslI CCNNNNNNNGG 1 cut(s) 313
BsnI GGCC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 187
Bsp13I TCCGGA 1 cut(s) 749
Bsp143I GATC 2 cut(s) 26, 633
BspACI CCGC 4 cut(s) 164, 167, 181, 221
BspANI GGCC 1 cut(s) 58
BspEI TCCGGA 1 cut(s) 749
BspLI GGNNCC 1 cut(s) 748
BspT104I TTCGAA 1 cut(s) 500
BspTI CTTAAG 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 447, 448
BssMI GATC 2 cut(s) 26, 633
BssSI CACGAG 1 cut(s) 538
Bst2BI CACGAG 1 cut(s) 538
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 1 cut(s) 622
Bst6I CTCTTC 2 cut(s) 759, 804
BstAFI CTTAAG 1 cut(s) 236
BstAPI GCANNNNNTGC 2 cut(s) 191, 574
BstBI TTCGAA 1 cut(s) 500
BstC8I GCNNGC 2 cut(s) 183, 192
BstDEI CTNAG 2 cut(s) 109, 597
BstF5I GGATG 2 cut(s) 471, 776
BstKTI GATC 2 cut(s) 29, 636
BstMBI GATC 2 cut(s) 26, 633
BstMWI GCNNNNNNNGC 4 cut(s) 187, 191, 293, 574
BstNI CCWGG 1 cut(s) 449
BstNSI RCATGY 2 cut(s) 397, 605
BstSCI CCNGG 1 cut(s) 447
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 305, 336, 580
BsuI GTATCC 1 cut(s) 610
BsuRI GGCC 1 cut(s) 58
BtsCI GGATG 2 cut(s) 471, 776
BtsIMutI CAGTG 1 cut(s) 499
Cac8I GCNNGC 2 cut(s) 183, 192
CaiI CAGNNNCTG 1 cut(s) 574
Cfr13I GGNCC 2 cut(s) 57, 223
Csp6I GTAC 1 cut(s) 703
CviAII CATG 3 cut(s) 245, 394, 602
CviQI GTAC 1 cut(s) 703
DdeI CTNAG 2 cut(s) 109, 597
DpnI GATC 2 cut(s) 28, 635
DpnII GATC 2 cut(s) 26, 633
Eam1104I CTCTTC 2 cut(s) 759, 804
EarI CTCTTC 2 cut(s) 759, 804
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 447
FaeI CATG 3 cut(s) 248, 397, 605
FaiI YATR 9 cut(s) 35, 246, 290, 395, 533, 587, 603, 640, 707
FatI CATG 3 cut(s) 244, 393, 601
FauI CCCGC 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 165, 294, 350, 569
FokI GGATG 2 cut(s) 458, 763
Fsp4HI GCNGC 4 cut(s) 165, 294, 350, 569
GluI GCNGC 4 cut(s) 165, 294, 350, 569
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 1 cut(s) 58
HapII CCGG 1 cut(s) 750
Hin1II CATG 3 cut(s) 248, 397, 605
HindIII AAGCTT 2 cut(s) 77, 149
HinfI GANTC 3 cut(s) 461, 536, 770
HpaII CCGG 1 cut(s) 750
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 7 cut(s) 26, 232, 331, 555, 582, 668, 696
Hpy188III TCNNGA 3 cut(s) 52, 685, 750
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 701, 791
HpyCH4III ACNGT 1 cut(s) 622
HpyCH4V TGCA 4 cut(s) 4, 194, 260, 792
HpyF10VI GCNNNNNNNGC 4 cut(s) 187, 191, 293, 574
HpyF3I CTNAG 2 cut(s) 109, 597
Hsp92II CATG 3 cut(s) 248, 397, 605
Kpn2I TCCGGA 1 cut(s) 749
Kzo9I GATC 2 cut(s) 26, 633
LmnI GCTCC 2 cut(s) 468, 752
LpnPI CCDG 9 cut(s) 113, 239, 297, 321, 434, 461, 684, 725, 763
Lsp1109I GCAGC 3 cut(s) 305, 336, 580
LweI GCATC 4 cut(s) 376, 422, 475, 480
MalI GATC 2 cut(s) 28, 635
MbiI CCGCTC 1 cut(s) 181
MboI GATC 2 cut(s) 26, 633
MboII GAAGA 6 cut(s) 21, 77, 80, 127, 601, 776
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 2 cut(s) 512, 561
MlyI GAGTC 2 cut(s) 530, 779
MmeI TCCRAC 1 cut(s) 533
MnlI CCTC 5 cut(s) 48, 133, 256, 514, 760
MroI TCCGGA 1 cut(s) 749
MseI TTAA 5 cut(s) 237, 344, 564, 624, 678
MspA1I CMGCKG 1 cut(s) 296
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 1 cut(s) 750
MspR9I CCNGG 1 cut(s) 449
MvaI CCWGG 1 cut(s) 449
MwoI GCNNNNNNNGC 4 cut(s) 187, 191, 293, 574
NdeII GATC 2 cut(s) 26, 633
NlaIII CATG 3 cut(s) 248, 397, 605
NlaIV GGNNCC 1 cut(s) 748
NspI RCATGY 2 cut(s) 397, 605
NspV TTCGAA 1 cut(s) 500
PasI CCCWGGG 1 cut(s) 448
PciI ACATGT 1 cut(s) 393
PfeI GAWTC 1 cut(s) 461
PkrI GCNGC 4 cut(s) 166, 295, 351, 570
PleI GAGTC 2 cut(s) 530, 778
PpsI GAGTC 2 cut(s) 530, 778
PscI ACATGT 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 447
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 748
PspPI GGNCC 2 cut(s) 57, 223
PstNI CAGNNNCTG 1 cut(s) 574
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 704
RsaNI GTAC 1 cut(s) 703
SaqAI TTAA 5 cut(s) 237, 344, 564, 624, 678
SatI GCNGC 4 cut(s) 165, 294, 350, 569
Sau3AI GATC 2 cut(s) 26, 633
Sau96I GGNCC 2 cut(s) 57, 223
SchI GAGTC 2 cut(s) 530, 779
ScrFI CCNGG 1 cut(s) 449
SduI GDGCHC 1 cut(s) 187
SfaNI GCATC 4 cut(s) 376, 422, 475, 480
SfuI TTCGAA 1 cut(s) 500
SinI GGWCC 1 cut(s) 223
SmlI CTYRAG 3 cut(s) 52, 236, 518
SmoI CTYRAG 3 cut(s) 52, 236, 518
Sse9I AATT 2 cut(s) 512, 561
SsiI CCGC 4 cut(s) 164, 167, 181, 221
StyD4I CCNGG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 622
TaqI TCGA 5 cut(s) 138, 436, 483, 500, 717
TasI AATT 2 cut(s) 512, 561
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 5 cut(s) 237, 344, 564, 624, 678
Tru9I TTAA 5 cut(s) 237, 344, 564, 624, 678
TscAI CASTG 1 cut(s) 499
TseI GCWGC 3 cut(s) 293, 349, 568
TspDTI ATGAA 4 cut(s) 387, 420, 602, 633
TspGWI ACGGA 1 cut(s) 776
TspRI CASTG 1 cut(s) 499
Vha464I CTTAAG 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 223
XceI RCATGY 2 cut(s) 397, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.