MD03G1130500.v1.1

ATP10 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0010232
Physical Location & Seq
Forward (+)
12824578 .. 12828072
3495 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1130500.v1.1.491

Sequence Viewer

Length: 807 bp
ATGAACCGATTCAGCCGATCTTCTATATTCGCTTCTCAAATCTTGAGGCCCAATGAGAGCAAGAAGCAGCAGCTGCTTCCAGCTTCCCAGCATTTCTTAGCTCAAAGAAGCTCCAATCGCTTCTTCGACATTTACAAGCTTGTAAATAAAGCAGCTATAGAGAAAGAGCGTGCCCGGCTTTCAGATGAGTTGAATAGGGGGTATTTTGCTGATATGTCTGAGCTTAAGAAACATGGTGGGAAGATTTATGTGGCAAATAAAACCATAGTTCCTGCAATGGCAGCCATAAAGTTTCCTGACTTAGAAGTGAACTACTCTGATGGAAAAGTATTGAAGCTGCCCGTTCGCTCCAATGGGAATGGAAATGTTGCTGAGGCCAACAAATTGGAAGTCCCCAAGGCATCTTTAGTATGCCTTTCATTTCGAGCAAGCTCCCAGAATGGAATGATTAATTCTTGGAGCGCCCCTTTTCTTGATGCTTTTAGTGATTCAAAGGATGTTCGACTATATGAGGTATCATTAATAGACTCATGGTTCTTATGTCGGAGTCCAATTAAGAAGCTTCTGCTCCGGATTATGAGGAAATCAAAGCATCACGAAAGCACTGAACTCAAAAGGCAGATCGTATATTCATTTGGTGACCATTATTACTTCAGAAAAGAACTGAAAATGCTGAACCTTCTGACCGGGTATATTTTCCTGCTTGATAAATTTGGTAGAATAAGATGTCAAGGCACTGGATTGGCTACCGAAGAGGAATCGTCGTCCTTTCTTTCATGCACAAAACTGCTTTTGGAAGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_10

Protein Analysis

269

Amino Acids

30.67

Weight (kDa)

9.66

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_10 PF05176 36 - 264 9.9e-32 ATP10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08220 AT1G08220
fragaria_vesca FvH4_3g30230 FvH4_3g30230 FvH4_3g30230
malus_domestica MD03G1130500.v1.1 MD11G1152100.v1.1
prunus_persica Prupe.6G115300_v2.0.a1 Prupe.6G115300_v2.0.a1
pyrus_communis pycom11g12450
rosa_chinensis RchiOBHm_Chr5g0056101
rosa_laevigata RLG00000035048
rosa_multiflora Rmu_sc0004174.1_g000010
rosa_roxburghii Rroxscaffold_1G00024200
rosa_rugosa Rorug05G0297500
rosa_samantha Rh5AG368400 Rh5BG379100 Rh5CG402300 Rh5DG391800
rosa_wichuraiana Rw0G004490 Rw5G034590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 570
AcsI RAATTY 1 cut(s) 710
AcuI CTGAAG 1 cut(s) 637
AflII CTTAAG 1 cut(s) 224
AgsI TTSAA 3 cut(s) 193, 334, 492
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AlwNI CAGNNNCTG 1 cut(s) 73
Aor13HI TCCGGA 1 cut(s) 570
AoxI GGCC 2 cut(s) 47, 375
ApeKI GCWGC 6 cut(s) 67, 70, 73, 152, 281, 337
ApoI RAATTY 1 cut(s) 710
ArsI GACNNNNNNTTYG 2 cut(s) 375, 407
AseI ATTAAT 2 cut(s) 450, 521
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 1 cut(s) 48
AsuC2I CCSGG 2 cut(s) 175, 688
AsuHPI GGTGA 1 cut(s) 650
BaeGI GKGCMC 1 cut(s) 175
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 6 cut(s) 60, 79, 82, 164, 293, 324
BccI CCATC 1 cut(s) 314
BcnI CCSGG 2 cut(s) 175, 688
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 465
BfrI CTTAAG 1 cut(s) 224
BisI GCNGC 6 cut(s) 68, 71, 74, 153, 282, 338
BlsI GCNGC 6 cut(s) 69, 72, 75, 154, 283, 339
Bme1390I CCNGG 2 cut(s) 175, 688
BmgT120I GGNCC 1 cut(s) 48
BmrFI CCNGG 2 cut(s) 175, 688
BmsI GCATC 3 cut(s) 410, 466, 601
Bpu10I CCTNAGC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 2 cut(s) 175, 688
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 570
Bse1I ACTGG 1 cut(s) 742
Bse3DI GCAATG 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 570
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 1 cut(s) 502
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 210, 363
BseNI ACTGG 1 cut(s) 742
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 6 cut(s) 60, 79, 82, 164, 293, 324
BseYI CCCAGC 1 cut(s) 87
BshFI GGCC 2 cut(s) 49, 377
BsiSI CCGG 3 cut(s) 175, 571, 687
BslFI GGGAC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 2 cut(s) 49, 377
Bsp1286I GDGCHC 1 cut(s) 175
Bsp13I TCCGGA 1 cut(s) 570
Bsp143I GATC 2 cut(s) 17, 621
BspANI GGCC 2 cut(s) 49, 377
BspCNI CTCAG 2 cut(s) 211, 364
BspEI TCCGGA 1 cut(s) 570
BspTI CTTAAG 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 1 cut(s) 742
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 2 cut(s) 17, 621
BssT1I CCWWGG 1 cut(s) 396
Bst6I CTCTTC 2 cut(s) 747, 792
BstAFI CTTAAG 1 cut(s) 224
BstAPI GCANNNNNTGC 1 cut(s) 73
BstC8I GCNNGC 2 cut(s) 171, 430
BstDEI CTNAG 4 cut(s) 97, 219, 301, 372
BstEII GGTNACC 1 cut(s) 638
BstF5I GGATG 1 cut(s) 502
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 2 cut(s) 20, 624
BstMBI GATC 2 cut(s) 17, 621
BstMWI GCNNNNNNNGC 4 cut(s) 73, 117, 175, 281
BstPI GGTNACC 1 cut(s) 638
BstSCI CCNGG 2 cut(s) 173, 686
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 175
BstV1I GCAGC 6 cut(s) 60, 79, 82, 164, 293, 324
BstXI CCANNNNNNTGG 1 cut(s) 385
BsuRI GGCC 2 cut(s) 49, 377
BtsCI GGATG 1 cut(s) 502
BtsIMutI CAGTG 2 cut(s) 603, 735
Cac8I GCNNGC 2 cut(s) 171, 430
CaiI CAGNNNCTG 1 cut(s) 73
CfoI GCGC 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 48
CviAII CATG 3 cut(s) 233, 531, 777
DdeI CTNAG 4 cut(s) 97, 219, 301, 372
DpnI GATC 2 cut(s) 19, 623
DpnII GATC 2 cut(s) 17, 621
Eam1104I CTCTTC 2 cut(s) 747, 792
EarI CTCTTC 2 cut(s) 747, 792
Eco130I CCWWGG 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 637
Eco91I GGTNACC 1 cut(s) 638
EcoO65I GGTNACC 1 cut(s) 638
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 3 cut(s) 236, 534, 780
FaqI GGGAC 1 cut(s) 377
FatI CATG 3 cut(s) 232, 530, 776
Fnu4HI GCNGC 6 cut(s) 68, 71, 74, 153, 282, 338
FokI GGATG 1 cut(s) 509
Fsp4HI GCNGC 6 cut(s) 68, 71, 74, 153, 282, 338
GlaI GCGC 1 cut(s) 463
GluI GCNGC 6 cut(s) 68, 71, 74, 153, 282, 338
GsaI CCCAGC 1 cut(s) 91
HaeII RGCGCY 1 cut(s) 465
HaeIII GGCC 2 cut(s) 49, 377
HapII CCGG 3 cut(s) 175, 571, 687
HhaI GCGC 1 cut(s) 464
Hin1II CATG 3 cut(s) 236, 534, 780
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HindIII AAGCTT 2 cut(s) 137, 560
HinfI GANTC 5 cut(s) 9, 488, 527, 547, 758
HpaII CCGG 3 cut(s) 175, 571, 687
HphI GGTGA 1 cut(s) 650
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 6 cut(s) 184, 220, 319, 546, 656, 684
Hpy188III TCNNGA 5 cut(s) 43, 296, 473, 571, 596
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 1 cut(s) 766
HpyAV CCTTC 1 cut(s) 689
HpyCH4V TGCA 2 cut(s) 275, 780
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 117, 175, 281
HpyF3I CTNAG 4 cut(s) 97, 219, 301, 372
Hsp92II CATG 3 cut(s) 236, 534, 780
HspAI GCGC 1 cut(s) 462
Kpn2I TCCGGA 1 cut(s) 570
Kzo9I GATC 2 cut(s) 17, 621
LmnI GCTCC 5 cut(s) 116, 353, 437, 459, 573
Lsp1109I GCAGC 6 cut(s) 60, 79, 82, 164, 293, 324
LweI GCATC 3 cut(s) 410, 466, 601
MaeIII GTNAC 1 cut(s) 638
MalI GATC 2 cut(s) 19, 623
MboI GATC 2 cut(s) 17, 621
MboII GAAGA 4 cut(s) 12, 115, 253, 764
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 4 cut(s) 383, 451, 552, 710
MlyI GAGTC 2 cut(s) 521, 556
MmeI TCCRAC 1 cut(s) 524
MnlI CCTC 5 cut(s) 39, 367, 505, 573, 748
MroI TCCGGA 1 cut(s) 570
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 4 cut(s) 225, 450, 521, 555
MspA1I CMGCKG 1 cut(s) 73
MspCI CTTAAG 1 cut(s) 224
MspI CCGG 3 cut(s) 175, 571, 687
MspR9I CCNGG 2 cut(s) 175, 688
MwoI GCNNNNNNNGC 4 cut(s) 73, 117, 175, 281
NciI CCSGG 2 cut(s) 175, 688
NdeII GATC 2 cut(s) 17, 621
NlaIII CATG 3 cut(s) 236, 534, 780
NmuCI GTSAC 1 cut(s) 638
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 9, 488, 758
PkrI GCNGC 6 cut(s) 69, 72, 75, 154, 283, 339
PleI GAGTC 2 cut(s) 521, 555
PpsI GAGTC 2 cut(s) 521, 555
PshBI ATTAAT 2 cut(s) 450, 521
PspEI GGTNACC 1 cut(s) 638
PspFI CCCAGC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 48
PstNI CAGNNNCTG 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 73
SaqAI TTAA 4 cut(s) 225, 450, 521, 555
SatI GCNGC 6 cut(s) 68, 71, 74, 153, 282, 338
Sau3AI GATC 2 cut(s) 17, 621
Sau96I GGNCC 1 cut(s) 48
SchI GAGTC 2 cut(s) 521, 556
ScrFI CCNGG 2 cut(s) 175, 688
SduI GDGCHC 1 cut(s) 175
SfaNI GCATC 3 cut(s) 410, 466, 601
SfcI CTRYAG 1 cut(s) 156
SmlI CTYRAG 2 cut(s) 43, 224
SmoI CTYRAG 2 cut(s) 43, 224
Sse9I AATT 4 cut(s) 383, 451, 552, 710
StyD4I CCNGG 2 cut(s) 173, 686
StyI CCWWGG 1 cut(s) 396
TaqI TCGA 3 cut(s) 126, 424, 502
TasI AATT 4 cut(s) 383, 451, 552, 710
TfiI GAWTC 3 cut(s) 9, 488, 758
Tru1I TTAA 4 cut(s) 225, 450, 521, 555
Tru9I TTAA 4 cut(s) 225, 450, 521, 555
TscAI CASTG 2 cut(s) 610, 742
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 6 cut(s) 67, 70, 73, 152, 281, 337
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 4 cut(s) 17, 408, 621, 765
TspRI CASTG 2 cut(s) 610, 742
Vha464I CTTAAG 1 cut(s) 224
VspI ATTAAT 2 cut(s) 450, 521
XapI RAATTY 1 cut(s) 710
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.