FvH4_3g30230

ATP10 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010232
Physical Location & Seq
Reverse (-)
23448265 .. 23451978
3714 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30230.t2

Sequence Viewer

Length: 822 bp
ATGCAAGGCTTGAAGCGACTCACCCGATCTTCCATATCTGCTTCTTCTCAAACCTTGAGGCCCAATGAGAACAACAAGAATCTCCATCTTCTTCCACCAAGCCAGCATTTCTTAGCTCAAAGAACCTCCAATCGCTTCTTCGATTTTTACAAGCTGGGAAACAAAGCGGCTGTAGAGAAAGAGCGGGCTCGGCTTGCAGATGAGCTTAATAGGGGGTATTTTGCTGACATGGATGATCTTAAGAAACATGGTGGAAAGGTATCAGAGTCAAATAAAATCTTATTTCCTGCTATGGTAGCTGTAAAGTTCCCTGACTTGGAAGTAACCTACTCTGATGGCAAAGCAGTAAAGCTGCCCCTTAGACCCAATGGAAATGAAAATGTGGCTGATGCCAATGTCTCAGATCTCCCTAAGGCATCTTTATACTGCCTTTCATTTCGAGCAAGTGCCCAGGGAATGATTGATTCTTGGAGTGTCCCTTTTGTCGATGCTTTCAGTGGTTCGAAAGAGGTTCAACTATTTGAGGTGTCATTTATAGACCAGTGGCTCTTATGTCGGACACCAATTAAGCAGCTTCTACTTCGGATCATGAAGAAACCTAAGCATGATGAAAACAAGGATGCAGTTAAGAGGCAGATAGTATATTCATTTGGTGACCATTATTACTTCAGAAAAGAACTTAGAATCTTGAACCTTCTGACAGGGTACGTATTCCTGCTTGATAAGTTTGGTAGAATAAGATGGCAAGGCTCCGGAGTGGCTACACAAGAGGAGGCATCGTCCCTTCTCTCTTGCACATCACTACTCTTGGAAGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_10

Protein Analysis

274

Amino Acids

31.04

Weight (kDa)

9.37

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_10 PF05176 2 - 192 2.1e-25 ATP10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08220 AT1G08220
fragaria_vesca FvH4_3g30230 FvH4_3g30230 FvH4_3g30230
malus_domestica MD03G1130500.v1.1 MD11G1152100.v1.1
prunus_persica Prupe.6G115300_v2.0.a1 Prupe.6G115300_v2.0.a1
pyrus_communis pycom11g12450
rosa_chinensis RchiOBHm_Chr5g0056101
rosa_laevigata RLG00000035048
rosa_multiflora Rmu_sc0004174.1_g000010
rosa_roxburghii Rroxscaffold_1G00024200
rosa_rugosa Rorug05G0297500
rosa_samantha Rh5AG368400 Rh5BG379100 Rh5CG402300 Rh5DG391800
rosa_wichuraiana Rw0G004490 Rw5G034590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 184
AccIII TCCGGA 1 cut(s) 752
AciI CCGC 2 cut(s) 167, 184
AclWI GGATC 1 cut(s) 593
AcuI CTGAAG 1 cut(s) 652
AfaI GTAC 1 cut(s) 707
AfiI CCNNNNNNNGG 1 cut(s) 316
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 3 cut(s) 13, 515, 691
AjnI CCWGG 1 cut(s) 450
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 6 cut(s) 116, 154, 205, 299, 352, 574
AluI AGCT 6 cut(s) 116, 154, 205, 299, 352, 574
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 1 cut(s) 593
Aor13HI TCCGGA 1 cut(s) 752
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 352, 571
AspS9I GGNCC 1 cut(s) 60
AsuHPI GGTGA 2 cut(s) 13, 665
AsuII TTCGAA 1 cut(s) 503
AxyI CCTNAGG 1 cut(s) 411
BaeGI GKGCMC 1 cut(s) 451
BanII GRGCYC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 339, 583
BccI CCATC 3 cut(s) 93, 329, 735
BciT130I CCWGG 1 cut(s) 452
BcoDI GTCTC 1 cut(s) 403
BfmI CTRYAG 1 cut(s) 171
BfrI CTTAAG 1 cut(s) 239
BglII AGATCT 1 cut(s) 403
BisI GCNGC 3 cut(s) 168, 353, 572
BlsI GCNGC 3 cut(s) 169, 354, 573
Bme1390I CCNGG 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 751
BmrFI CCNGG 1 cut(s) 452
BmsI GCATC 5 cut(s) 379, 425, 478, 610, 785
Bpu10I CCTNAGC 1 cut(s) 600
Bpu14I TTCGAA 1 cut(s) 503
BpuEI CTTGAG 1 cut(s) 76
BsaAI YACGTR 1 cut(s) 709
BsaJI CCNNGG 2 cut(s) 450, 451
BsaWI WCCGGW 1 cut(s) 752
BsaXI ACNNNNNCTCC 2 cut(s) 764, 794
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 541
Bse21I CCTNAGG 1 cut(s) 411
BseAI TCCGGA 1 cut(s) 752
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 2 cut(s) 450, 451
BseGI GGATG 2 cut(s) 238, 625
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 785
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 2 cut(s) 339, 583
BseYI CCCAGC 1 cut(s) 154
BshFI GGCC 1 cut(s) 61
BsiSI CCGG 1 cut(s) 753
BslFI GGGAC 2 cut(s) 461, 766
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 403
BsmFI GGGAC 2 cut(s) 461, 766
BsnI GGCC 1 cut(s) 61
Bsp119I TTCGAA 1 cut(s) 503
Bsp1286I GDGCHC 2 cut(s) 190, 451
Bsp13I TCCGGA 1 cut(s) 752
Bsp143I GATC 4 cut(s) 26, 235, 403, 585
BspACI CCGC 2 cut(s) 167, 184
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 413
BspEI TCCGGA 1 cut(s) 752
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 1 cut(s) 751
BspPI GGATC 1 cut(s) 593
BspT104I TTCGAA 1 cut(s) 503
BspTI CTTAAG 1 cut(s) 239
BsrBI CCGCTC 1 cut(s) 184
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 2 cut(s) 450, 451
BssMI GATC 4 cut(s) 26, 235, 403, 585
Bst2UI CCWGG 1 cut(s) 452
Bst6I CTCTTC 1 cut(s) 807
BstAFI CTTAAG 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 709
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 3 cut(s) 104, 186, 195
BstDEI CTNAG 6 cut(s) 112, 359, 400, 411, 600, 680
BstEII GGTNACC 1 cut(s) 653
BstF5I GGATG 2 cut(s) 238, 625
BstKTI GATC 4 cut(s) 29, 238, 406, 588
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 4 cut(s) 26, 235, 403, 585
BstMWI GCNNNNNNNGC 3 cut(s) 190, 194, 296
BstNI CCWGG 1 cut(s) 452
BstPI GGTNACC 1 cut(s) 653
BstSCI CCNGG 1 cut(s) 450
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 451
BstSNI TACGTA 1 cut(s) 709
BstV1I GCAGC 2 cut(s) 339, 583
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
Bsu36I CCTNAGG 1 cut(s) 411
BsuRI GGCC 1 cut(s) 61
BtsCI GGATG 2 cut(s) 238, 625
BtsIMutI CAGTG 2 cut(s) 502, 548
Cac8I GCNNGC 3 cut(s) 104, 186, 195
CciI TCATGA 1 cut(s) 588
Cfr13I GGNCC 1 cut(s) 60
Csp6I GTAC 1 cut(s) 706
CviAII CATG 4 cut(s) 229, 248, 589, 605
CviQI GTAC 1 cut(s) 706
DdeI CTNAG 6 cut(s) 112, 359, 400, 411, 600, 680
DpnI GATC 4 cut(s) 28, 237, 405, 587
DpnII GATC 4 cut(s) 26, 235, 403, 585
Eam1104I CTCTTC 1 cut(s) 807
EarI CTCTTC 1 cut(s) 807
Eco105I TACGTA 1 cut(s) 709
Eco24I GRGCYC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 652
Eco81I CCTNAGG 1 cut(s) 411
Eco91I GGTNACC 1 cut(s) 653
EcoO65I GGTNACC 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 190
FaeI CATG 4 cut(s) 232, 251, 592, 608
FaqI GGGAC 2 cut(s) 461, 766
FatI CATG 4 cut(s) 228, 247, 588, 604
FauI CCCGC 1 cut(s) 177
Fnu4HI GCNGC 3 cut(s) 168, 353, 572
FokI GGATG 2 cut(s) 245, 632
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 3 cut(s) 168, 353, 572
GluI GCNGC 3 cut(s) 168, 353, 572
GsaI CCCAGC 1 cut(s) 158
HaeIII GGCC 1 cut(s) 61
HapII CCGG 1 cut(s) 753
Hin1II CATG 4 cut(s) 232, 251, 592, 608
HinfI GANTC 5 cut(s) 18, 79, 266, 464, 684
HpaII CCGG 1 cut(s) 753
HphI GGTGA 2 cut(s) 13, 665
Hpy188I TCNGA 7 cut(s) 265, 334, 403, 558, 585, 671, 699
Hpy188III TCNNGA 3 cut(s) 589, 688, 753
HpyAV CCTTC 2 cut(s) 704, 794
HpyCH4IV ACGT 1 cut(s) 708
HpyCH4V TGCA 4 cut(s) 4, 197, 623, 795
HpyF10VI GCNNNNNNNGC 3 cut(s) 190, 194, 296
HpyF3I CTNAG 6 cut(s) 112, 359, 400, 411, 600, 680
HpySE526I ACGT 1 cut(s) 708
Hsp92II CATG 4 cut(s) 232, 251, 592, 608
Kpn2I TCCGGA 1 cut(s) 752
Kzo9I GATC 4 cut(s) 26, 235, 403, 585
LmnI GCTCC 1 cut(s) 755
Lsp1109I GCAGC 2 cut(s) 339, 583
LweI GCATC 5 cut(s) 379, 425, 478, 610, 785
MaeII ACGT 1 cut(s) 708
MaeIII GTNAC 2 cut(s) 322, 653
MalI GATC 4 cut(s) 28, 237, 405, 587
MbiI CCGCTC 1 cut(s) 184
MboI GATC 4 cut(s) 26, 235, 403, 585
MboII GAAGA 6 cut(s) 21, 36, 80, 83, 130, 604
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 2 cut(s) 190, 451
MluCI AATT 1 cut(s) 564
MlyI GAGTC 2 cut(s) 12, 275
MmeI TCCRAC 1 cut(s) 536
MnlI CCTC 7 cut(s) 51, 136, 502, 517, 624, 763, 766
MroI TCCGGA 1 cut(s) 752
MseI TTAA 4 cut(s) 207, 240, 567, 627
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 1 cut(s) 753
MspR9I CCNGG 1 cut(s) 452
MvaI CCWGG 1 cut(s) 452
MwoI GCNNNNNNNGC 3 cut(s) 190, 194, 296
NdeII GATC 4 cut(s) 26, 235, 403, 585
NlaIII CATG 4 cut(s) 232, 251, 592, 608
NlaIV GGNNCC 1 cut(s) 751
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 653
NspV TTCGAA 1 cut(s) 503
PagI TCATGA 1 cut(s) 588
PasI CCCWGGG 1 cut(s) 451
PfeI GAWTC 3 cut(s) 79, 464, 684
PkrI GCNGC 3 cut(s) 169, 354, 573
PleI GAGTC 2 cut(s) 12, 274
PpsI GAGTC 2 cut(s) 12, 274
Ppu21I YACGTR 1 cut(s) 709
Psp6I CCWGG 1 cut(s) 450
PspEI GGTNACC 1 cut(s) 653
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 1 cut(s) 751
PspPI GGNCC 1 cut(s) 60
PsuI RGATCY 1 cut(s) 403
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
SaqAI TTAA 4 cut(s) 207, 240, 567, 627
SatI GCNGC 3 cut(s) 168, 353, 572
Sau3AI GATC 4 cut(s) 26, 235, 403, 585
Sau96I GGNCC 1 cut(s) 60
SchI GAGTC 2 cut(s) 12, 275
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 2 cut(s) 190, 451
SfaNI GCATC 5 cut(s) 379, 425, 478, 610, 785
SfcI CTRYAG 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 503
SmlI CTYRAG 2 cut(s) 55, 239
SmoI CTYRAG 2 cut(s) 55, 239
SnaBI TACGTA 1 cut(s) 709
Sse9I AATT 1 cut(s) 564
SsiI CCGC 2 cut(s) 167, 184
StyD4I CCNGG 1 cut(s) 450
TaiI ACGT 1 cut(s) 711
TaqI TCGA 4 cut(s) 141, 439, 486, 503
TasI AATT 1 cut(s) 564
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 3 cut(s) 79, 464, 684
Tru1I TTAA 4 cut(s) 207, 240, 567, 627
Tru9I TTAA 4 cut(s) 207, 240, 567, 627
TscAI CASTG 2 cut(s) 502, 548
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 2 cut(s) 352, 571
Tsp45I GTSAC 1 cut(s) 653
TspDTI ATGAA 5 cut(s) 390, 423, 605, 624, 636
TspRI CASTG 2 cut(s) 502, 548
Vha464I CTTAAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.