AT1G08250

Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
2588776 .. 2590609
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08250.1

Sequence Viewer

Length: 1242 bp
ATGAAAGCTCTATCATCTTCTTCTCCAATATTAGGTGCTAGCCAGCCGGCGACGGCGACTGCGCTTATCGCGCGATCTGGTCGTTCTGAATGGCAGAGCTCCTGCGCTATTCTAACAAGCAAGGTTATTTCTCAAGAAGAATCTGAATCCTTACCTGTGCCTCCAGTTTCCGGCGGAGTTGATCATCTCAACGGCCATAACAGCGCCGCCGCACGAGTTCCAGGAATGAATCTTGTTCCGATTGAGAAATCTGATAGCAATCCGTTGGTTCCACAGCATCGTCATAATCCACTGAAACCCCTTAGCATGACGGATCTCTCGCCGGCTCCGATGCACGGATCTAATCTACGCGTCGCTTATCAAGGTGTTCCCGGTGCTTACTCTGAAGCAGCCGCTGGTAAAGCTTATCCTAATTGTCAAGCTATACCTTGCGATCAATTTGAGGTTGCGTTTCAAGCGGTGGAGCTTTGGATCGCAGATCGTGCTGTTTTACCGGTGGAGAACTCTCTCGGCGGTTCTATCCACCGTAATTACGATCTCCTCCTCCGTCACCGTCTTCATATAGTCGGCGAAGTTCAACTCCCTGTTCATCACTGTTTACTGGCTCTTCCCGGCGTTCGTAAAGAGTTTCTCACACGTGTGATCTCACACCCTCAAGGTCTCGCTCAGTGTGAGCACACGCTCACAAAGCTCGGACTTAATGTCGCACGTGAGGCAGTTGATGACACCGCAGGAGCCGCTGAGTTCATCGCCTCTAACAACCTCCGCGACACAGCCGCTATCGCGAGTGCACGCGCCGCCGAGATATACGGGTTGGAGATTTTGGAAGATGGGATTCAGGACGACGTGAGTAACGTGACGCGCTTCGTGATGCTGGCGCGTGAGCCAATCATACCTAGAACAGATAGACCGTTCAAGACTAGCATTGTCTTTGCGCACGAGAAAGGAACCAGCGTGCTTTTCAAGGTGCTCTCTGCTTTCGCCTTCAGAGACATTAGCTTGACGAAGATCGAATCGAGGCCGAATCACAACCGTCCGATCAGGGTCGTGGATGATGCCAATGTCGGGACGGCGAAGCATTTTGAGTACATGTTTTATGTTGACTTCGAGGCCTCGATGGCGGAGGCGCGTGCTCAGAACGCGCTTGCCGAGGTTCAGGAGTTTACATCGTTCTTGCGGGTGCTTGGGAGTTATCCCATGGATATGACTCCTTGGTCACCAACATCATCAACTTCATCGTAA

Protein Analysis

413

Amino Acids

44.8

Weight (kDa)

6.11

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDT PF00800 118 - 295 2.7e-58 Prephenate dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1213
Acc16I TGCGCA 1 cut(s) 936
AclWI GGATC 3 cut(s) 321, 346, 479
AcoI YGGCCR 1 cut(s) 193
AcuI CTGAAG 2 cut(s) 405, 970
AcvI CACGTG 2 cut(s) 638, 710
AfaI GTAC 1 cut(s) 1088
AfiI CCNNNNNNNGG 4 cut(s) 32, 170, 335, 1065
AflIII ACRYGT 4 cut(s) 349, 635, 637, 1089
AgeI ACCGGT 1 cut(s) 493
AgsI TTSAA 4 cut(s) 455, 578, 916, 964
AhdI GACNNNNNGTC 1 cut(s) 701
AjiI CACGTC 1 cut(s) 847
AjnI CCWGG 1 cut(s) 220
AleI CACNNNNGTG 1 cut(s) 638
AluBI AGCT 7 cut(s) 8, 99, 404, 422, 466, 691, 999
AluI AGCT 7 cut(s) 8, 99, 404, 422, 466, 691, 999
Alw21I GWGCWC 5 cut(s) 101, 678, 793, 972, 1135
Alw26I GTCTC 2 cut(s) 665, 984
Alw44I GTGCAC 1 cut(s) 789
AlwI GGATC 3 cut(s) 321, 346, 479
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 3 cut(s) 193, 1019, 1110
ApaLI GTGCAC 1 cut(s) 789
ApeKI GCWGC 1 cut(s) 389
AsiGI ACCGGT 1 cut(s) 493
AsuC2I CCSGG 2 cut(s) 372, 612
AsuHPI GGTGA 2 cut(s) 542, 1209
AsuNHI GCTAGC 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 793
BanII GRGCYC 1 cut(s) 101
BauI CACGAG 2 cut(s) 213, 938
BbrPI CACGTG 2 cut(s) 638, 710
BbsI GAAGAC 1 cut(s) 548
Bbv12I GWGCWC 5 cut(s) 101, 678, 793, 972, 1135
BbvI GCAGC 1 cut(s) 401
BccI CCATC 2 cut(s) 824, 1111
BceAI ACGGC 3 cut(s) 69, 208, 1086
BciT130I CCWGG 1 cut(s) 222
BclI TGATCA 1 cut(s) 181
BcnI CCSGG 2 cut(s) 372, 612
BcoDI GTCTC 2 cut(s) 665, 984
BfaI CTAG 3 cut(s) 39, 897, 921
BfoI RGCGCY 1 cut(s) 207
BglI GCCNNNNNGGC 1 cut(s) 1118
BisI GCNGC 7 cut(s) 207, 210, 390, 393, 738, 777, 798
BlsI GCNGC 7 cut(s) 208, 211, 391, 394, 739, 778, 799
Bme1390I CCNGG 3 cut(s) 222, 372, 612
BmeRI GACNNNNNGTC 1 cut(s) 701
BmgBI CACGTC 1 cut(s) 847
BmiI GGNNCC 4 cut(s) 270, 327, 736, 949
BmrFI CCNGG 3 cut(s) 222, 372, 612
BmsI GCATC 4 cut(s) 286, 321, 861, 1045
BmtI GCTAGC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 548
BpmI CTGGAG 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 302
BpuEI CTTGAG 2 cut(s) 117, 639
BpuMI CCSGG 2 cut(s) 372, 612
BsaAI YACGTR 2 cut(s) 638, 710
BsaBI GATNNNNATC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 665
BsaJI CCNNGG 3 cut(s) 1149, 1197, 1211
BsaWI WCCGGW 1 cut(s) 493
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 170, 335, 1065
Bse118I RCCGGY 3 cut(s) 46, 322, 493
Bse1I ACTGG 2 cut(s) 164, 606
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 3 cut(s) 1149, 1197, 1211
BseGI GGATG 1 cut(s) 1057
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 4 cut(s) 32, 170, 335, 1065
BseMII CTCAG 3 cut(s) 680, 732, 1148
BseNI ACTGG 2 cut(s) 164, 606
BseRI GAGGAG 2 cut(s) 530, 533
BseSI GKGCMC 1 cut(s) 793
BseXI GCAGC 1 cut(s) 401
BshFI GGCC 3 cut(s) 195, 1021, 1112
BshTI ACCGGT 1 cut(s) 493
BsiHKAI GWGCWC 5 cut(s) 101, 678, 793, 972, 1135
BsiSI CCGG 6 cut(s) 47, 171, 323, 372, 494, 612
BslFI GGGAC 1 cut(s) 1081
BslI CCNNNNNNNGG 4 cut(s) 32, 170, 335, 1065
BsmAI GTCTC 2 cut(s) 665, 984
BsmFI GGGAC 1 cut(s) 1081
BsnI GGCC 3 cut(s) 195, 1021, 1112
Bso31I GGTCTC 1 cut(s) 665
Bsp1286I GDGCHC 5 cut(s) 101, 678, 793, 972, 1135
Bsp19I CCATGG 1 cut(s) 1197
Bsp68I TCGCGA 1 cut(s) 785
BspANI GGCC 3 cut(s) 195, 1021, 1112
BspCNI CTCAG 3 cut(s) 679, 733, 1147
BspLI GGNNCC 4 cut(s) 270, 327, 736, 949
BspOI GCTAGC 1 cut(s) 42
BspPI GGATC 3 cut(s) 321, 346, 479
BspQI GCTCTTC 1 cut(s) 612
BspTNI GGTCTC 1 cut(s) 665
BsrFI RCCGGY 3 cut(s) 46, 322, 493
BsrI ACTGG 2 cut(s) 164, 606
BssAI RCCGGY 3 cut(s) 46, 322, 493
BssECI CCNNGG 3 cut(s) 1149, 1197, 1211
BssSI CACGAG 2 cut(s) 213, 938
BssT1I CCWWGG 2 cut(s) 1197, 1211
Bst2BI CACGAG 2 cut(s) 213, 938
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 5 cut(s) 527, 554, 596, 912, 1034
Bst6I CTCTTC 1 cut(s) 612
BstAPI GCANNNNNTGC 1 cut(s) 482
BstBAI YACGTR 2 cut(s) 638, 710
BstC8I GCNNGC 9 cut(s) 40, 44, 48, 324, 793, 876, 956, 1131, 1146
BstDEI CTNAG 4 cut(s) 302, 666, 741, 1134
BstDSI CCRYGG 1 cut(s) 1197
BstEII GGTNACC 1 cut(s) 1215
BstF5I GGATG 1 cut(s) 1057
BstH2I RGCGCY 1 cut(s) 207
BstMAI GTCTC 2 cut(s) 665, 984
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 1093
BstPI GGTNACC 1 cut(s) 1215
BstSCI CCNGG 3 cut(s) 220, 370, 610
BstSLI GKGCMC 1 cut(s) 793
BstV1I GCAGC 1 cut(s) 401
BstV2I GAAGAC 1 cut(s) 548
BstX2I RGATCY 2 cut(s) 313, 338
BstYI RGATCY 2 cut(s) 313, 338
BsuRI GGCC 3 cut(s) 195, 1021, 1112
BtgI CCRYGG 1 cut(s) 1197
BtgZI GCGATG 1 cut(s) 733
BtrI CACGTC 1 cut(s) 847
BtsCI GGATG 1 cut(s) 1057
BtsIMutI CAGTG 3 cut(s) 290, 592, 674
BtuMI TCGCGA 1 cut(s) 785
Cac8I GCNNGC 9 cut(s) 40, 44, 48, 324, 793, 876, 956, 1131, 1146
CaiI CAGNNNCTG 1 cut(s) 395
Cfr10I RCCGGY 3 cut(s) 46, 322, 493
CseI GACGC 2 cut(s) 340, 868
Csp6I GTAC 1 cut(s) 1087
CspAI ACCGGT 1 cut(s) 493
CviAII CATG 3 cut(s) 307, 1090, 1198
CviQI GTAC 1 cut(s) 1087
DdeI CTNAG 4 cut(s) 302, 666, 741, 1134
DrdI GACNNNNNNGTC 1 cut(s) 1213
DriI GACNNNNNGTC 1 cut(s) 701
DseDI GACNNNNNNGTC 1 cut(s) 1213
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 612
Eam1105I GACNNNNNGTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 612
EciI GGCGGA 2 cut(s) 189, 1136
Ecl136II GAGCTC 1 cut(s) 99
Eco130I CCWWGG 2 cut(s) 1197, 1211
Eco147I AGGCCT 1 cut(s) 1112
Eco24I GRGCYC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 665
Eco53kI GAGCTC 1 cut(s) 99
Eco57I CTGAAG 2 cut(s) 405, 970
Eco72I CACGTG 2 cut(s) 638, 710
Eco91I GGTNACC 1 cut(s) 1215
EcoICRI GAGCTC 1 cut(s) 99
EcoO65I GGTNACC 1 cut(s) 1215
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 2 cut(s) 1197, 1211
EcoT38I GRGCYC 1 cut(s) 101
ErhI CCWWGG 2 cut(s) 1197, 1211
FaeI CATG 3 cut(s) 310, 1093, 1201
FaqI GGGAC 1 cut(s) 1081
FatI CATG 3 cut(s) 306, 1089, 1197
FauI CCCGC 1 cut(s) 1170
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 7 cut(s) 207, 210, 390, 393, 738, 777, 798
FokI GGATG 1 cut(s) 1064
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 7 cut(s) 207, 210, 390, 393, 738, 777, 798
FspBI CTAG 3 cut(s) 39, 897, 921
FspI TGCGCA 1 cut(s) 936
GluI GCNGC 7 cut(s) 207, 210, 390, 393, 738, 777, 798
GsuI CTGGAG 1 cut(s) 147
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 3 cut(s) 195, 1021, 1112
HapII CCGG 6 cut(s) 47, 171, 323, 372, 494, 612
HgaI GACGC 2 cut(s) 340, 868
Hin1II CATG 3 cut(s) 310, 1093, 1201
HincII GTYRAC 1 cut(s) 1102
HindII GTYRAC 1 cut(s) 1102
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 7 cut(s) 140, 146, 229, 835, 1013, 1024, 1207
HpaII CCGG 6 cut(s) 47, 171, 323, 372, 494, 612
HphI GGTGA 2 cut(s) 542, 1209
Hpy166II GTNNAC 4 cut(s) 599, 791, 1102, 1164
Hpy188III TCNNGA 7 cut(s) 134, 784, 839, 868, 916, 1066, 1157
Hpy8I GTNNAC 4 cut(s) 599, 791, 1102, 1164
Hpy99I CGWCG 3 cut(s) 55, 356, 848
HpyAV CCTTC 1 cut(s) 994
HpyCH4III ACNGT 5 cut(s) 527, 554, 596, 912, 1034
HpyCH4IV ACGT 4 cut(s) 637, 709, 846, 855
HpyCH4V TGCA 2 cut(s) 334, 791
HpyF3I CTNAG 4 cut(s) 302, 666, 741, 1134
HpySE526I ACGT 4 cut(s) 637, 709, 846, 855
Hsp92II CATG 3 cut(s) 310, 1093, 1201
KroI GCCGGC 2 cut(s) 46, 322
KroNI GCCGGC 2 cut(s) 48, 324
Ksp22I TGATCA 1 cut(s) 181
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 4 cut(s) 104, 331, 463, 734
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 4 cut(s) 286, 321, 861, 1045
MaeI CTAG 3 cut(s) 39, 897, 921
MaeII ACGT 4 cut(s) 637, 709, 846, 855
MaeIII GTNAC 4 cut(s) 548, 851, 856, 1215
MboII GAAGA 7 cut(s) 9, 12, 149, 548, 599, 839, 1018
MflI RGATCY 2 cut(s) 313, 338
MhlI GDGCHC 5 cut(s) 101, 678, 793, 972, 1135
MluCI AATT 3 cut(s) 412, 437, 529
MluI ACGCGT 1 cut(s) 349
MlyI GAGTC 1 cut(s) 1201
MmeI TCCRAC 1 cut(s) 795
MroNI GCCGGC 2 cut(s) 46, 322
MseI TTAA 1 cut(s) 699
MslI CAYNNNNRTG 2 cut(s) 638, 1202
MspA1I CMGCKG 2 cut(s) 395, 740
MspI CCGG 6 cut(s) 47, 171, 323, 372, 494, 612
MspR9I CCNGG 3 cut(s) 222, 372, 612
MvaI CCWGG 1 cut(s) 222
NaeI GCCGGC 2 cut(s) 48, 324
NciI CCSGG 2 cut(s) 372, 612
NcoI CCATGG 1 cut(s) 1197
NgoMIV GCCGGC 2 cut(s) 46, 322
NheI GCTAGC 1 cut(s) 38
NlaIII CATG 3 cut(s) 310, 1093, 1201
NlaIV GGNNCC 4 cut(s) 270, 327, 736, 949
NmeAIII GCCGAG 3 cut(s) 489, 826, 1174
NmuCI GTSAC 3 cut(s) 548, 856, 1215
NruI TCGCGA 1 cut(s) 785
NsbI TGCGCA 1 cut(s) 936
NspI RCATGY 1 cut(s) 1093
OliI CACNNNNGTG 1 cut(s) 638
PceI AGGCCT 1 cut(s) 1112
PciI ACATGT 1 cut(s) 1089
PciSI GCTCTTC 1 cut(s) 612
PcsI WCGNNNNNNNCGW 3 cut(s) 326, 852, 1146
PdiI GCCGGC 2 cut(s) 48, 324
PfeI GAWTC 6 cut(s) 140, 146, 229, 835, 1013, 1024
PfoI TCCNGGA 1 cut(s) 220
PinAI ACCGGT 1 cut(s) 493
PkrI GCNGC 7 cut(s) 208, 211, 391, 394, 739, 778, 799
PleI GAGTC 1 cut(s) 1201
PmaCI CACGTG 2 cut(s) 638, 710
PmlI CACGTG 2 cut(s) 638, 710
PpsI GAGTC 1 cut(s) 1201
Ppu21I YACGTR 2 cut(s) 638, 710
PscI ACATGT 1 cut(s) 1089
Psp124BI GAGCTC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 220
PspCI CACGTG 2 cut(s) 638, 710
PspEI GGTNACC 1 cut(s) 1215
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 4 cut(s) 270, 327, 736, 949
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 2 cut(s) 313, 338
RruI TCGCGA 1 cut(s) 785
RsaI GTAC 1 cut(s) 1088
RsaNI GTAC 1 cut(s) 1087
RseI CAYNNNNRTG 2 cut(s) 638, 1202
SacI GAGCTC 1 cut(s) 101
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 1 cut(s) 699
SatI GCNGC 7 cut(s) 207, 210, 390, 393, 738, 777, 798
SchI GAGTC 1 cut(s) 1201
ScrFI CCNGG 3 cut(s) 222, 372, 612
SduI GDGCHC 5 cut(s) 101, 678, 793, 972, 1135
SfaNI GCATC 4 cut(s) 286, 321, 861, 1045
SmiMI CAYNNNNRTG 2 cut(s) 638, 1202
SmlI CTYRAG 2 cut(s) 132, 654
SmoI CTYRAG 2 cut(s) 132, 654
Sse9I AATT 3 cut(s) 412, 437, 529
SseBI AGGCCT 1 cut(s) 1112
SspI AATATT 1 cut(s) 30
SspMI CTAG 3 cut(s) 39, 897, 921
SstI GAGCTC 1 cut(s) 101
StuI AGGCCT 1 cut(s) 1112
StyD4I CCNGG 3 cut(s) 220, 370, 610
StyI CCWWGG 2 cut(s) 1197, 1211
TaaI ACNGT 5 cut(s) 527, 554, 596, 912, 1034
TaiI ACGT 4 cut(s) 640, 712, 849, 858
TaqI TCGA 4 cut(s) 1011, 1016, 1107, 1115
TasI AATT 3 cut(s) 412, 437, 529
TatI WGTACW 1 cut(s) 1086
TauI GCSGC 6 cut(s) 209, 212, 395, 740, 779, 800
TfiI GAWTC 6 cut(s) 140, 146, 229, 835, 1013, 1024
Tru1I TTAA 1 cut(s) 699
Tru9I TTAA 1 cut(s) 699
TscAI CASTG 3 cut(s) 297, 599, 674
TseFI GTSAC 3 cut(s) 548, 856, 1215
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 3 cut(s) 548, 856, 1215
TspDTI ATGAA 6 cut(s) 17, 242, 548, 578, 736, 1224
TspGWI ACGGA 4 cut(s) 252, 326, 351, 536
TspRI CASTG 3 cut(s) 297, 599, 674
VneI GTGCAC 1 cut(s) 789
XceI RCATGY 1 cut(s) 1093
XspI CTAG 3 cut(s) 39, 897, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.