Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005093

Physical Location & Seq

Genomic Coordinates Reverse (-)

33494630 .. 33496919

Gene Structure 2290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0291700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGAAAGAAGAAATCCACCAATACCGAAACTGAGGGATCTGGAAAACAAAAGGCCACATGGCCTAATGAGGTAGTAGCTATATTTTGTGATATAGCTGCTAAGGAAGTGGCCAAAGGAAATAGGCCCGGTACACATTTTGATAAAAAGGGATGGACAAATGAAATTGGTATTGGATGGGATCCGGCTAGGAAGACTGTCGATGCACCGGCTGAATGGTGGGAAACCAAAATTCAGATCAATCCAGAGTATCGCAAATTTCGAGACGTGGGAGTTAGTCCTGACATGATTACTGTCTATGATAACATGTTCAAGGGTAGCACAGCCCTAGGTCACAATGTCATGATTCCCTCAGAAACTATAGATATTGAAGAGGTTGTGGAGGATTCTGAGCATAATATTATTTCTGGAGATGATGAAGAGGATTATGAGCAAGGTAATGAATGTAGAGGGAAAAAGAGAACAACTGTGGAGCGCCAAACAGAGGCTGATAAAGAGAAAAAAGGAAAAGGAGTTATGGGAGGGCCAAAGGGGAAGAAAGAAAAGGTGGGAGGTGCGGCCAAATTGTCTAAACAAATCGATCGGCTTGTTGATGTAGTCGAGAGTAGGAGTACAGCCACCTCTGTTCGTGTTAATGGTACCTCACATGGAACTAGTATTCAGGAGGTGATGAAAGTTGTTGCAACATTACCAGGAGCAGAAACTGGTACCAAGTTAGGGTGGTTTGCAACGGAGCTGTTCTGCTCTCAAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006558 GO:0006570 GO:0006571 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009637 GO:0009642 GO:0009645 GO:0009987 GO:0010244 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0017144 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0047769 GO:0050896 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902221 GO:1902223

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PDT

Protein Analysis

252

Amino Acids

27.71

Weight (kDa)

5.94

Isoelectric Point (pI)

29.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08250 AT2G27820 AT3G44720 AT5G22630
fragaria_vesca	FvH4_3g29870
malus_domestica	MD03G1134800.v1.1 MD11G1157600.v1.1
prunus_persica	Prupe.6G119200_v2.0.a1
pyrus_communis	pycom03g09080 pycom11g12770
rosa_chinensis	RchiOBHm_Chr5g0055201 RchiOBHm_Chr7g0203231
rosa_laevigata	RLG00000034973
rosa_multiflora	Rmu_sc0000994.1_g000007 Rmu_sc0010754.1_g000003 Rmu_sc0011582.1_g000002 Rmu_sc0018729.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025130
rosa_rugosa	Rorug05G0291700 Rorug07G0075300.1
rosa_samantha	Rh5AG361500 Rh5BG372900 Rh5CG394800 Rh5DG386300 Rh7AG204600 Rh7BG203800 Rh7CG215600 Rh7DG211200
rosa_wichuraiana	Rw5G033990 Rw7G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	638, 707
AccB1I	GGYRCC	2 cut(s)	638, 707
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	3 cut(s)	46, 176, 189
AcoI	YGGCCR	2 cut(s)	111, 558
AcsI	RAATTY	2 cut(s)	231, 257
AfaI	GTAC	4 cut(s)	133, 613, 640, 709
AfiI	CCNNNNNNNGG	2 cut(s)	484, 717
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	2 cut(s)	313, 371
AhlI	ACTAGT	1 cut(s)	653
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	691
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	3 cut(s)	80, 98, 736
AluI	AGCT	3 cut(s)	80, 98, 736
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	3 cut(s)	46, 176, 189
AlwNI	CAGNNNCTG	2 cut(s)	488, 704
AoxI	GGCC	6 cut(s)	54, 62, 111, 125, 524, 558
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	231, 257
Asp718I	GGTACC	2 cut(s)	638, 707
AspA2I	CCTAGG	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	477
AspS9I	GGNCC	2 cut(s)	126, 524
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	679
AvrII	CCTAGG	1 cut(s)	328
BalI	TGGCCA	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	181
BanI	GGYRCC	2 cut(s)	638, 707
BbsI	GAAGAC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	147, 171
BciT130I	CCWGG	1 cut(s)	693
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	258
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	3 cut(s)	189, 329, 654
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	478
BisI	GCNGC	2 cut(s)	99, 558
BlnI	CCTAGG	1 cut(s)	328
BlsI	GCNGC	2 cut(s)	100, 559
Bme1390I	CCNGG	2 cut(s)	129, 693
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	126, 524
BmiI	GGNNCC	3 cut(s)	183, 640, 709
BmrFI	CCNGG	2 cut(s)	129, 693
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	732
BpuMI	CCSGG	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	579
BsaJI	CCNNGG	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	2 cut(s)	484, 717
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	709
BseBI	CCWGG	1 cut(s)	693
BseCI	ATCGAT	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	2 cut(s)	158, 182
BseLI	CCNNNNNNNGG	2 cut(s)	484, 717
BseMII	CTCAG	3 cut(s)	24, 366, 381
BseNI	ACTGG	1 cut(s)	709
BseXI	GCAGC	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	583
BshFI	GGCC	6 cut(s)	56, 64, 113, 127, 526, 560
BshNI	GGYRCC	2 cut(s)	638, 707
BshVI	ATCGAT	1 cut(s)	579
BsiEI	CGRYCG	1 cut(s)	583
BsiSI	CCGG	3 cut(s)	129, 185, 209
BslI	CCNNNNNNNGG	2 cut(s)	484, 717
BsmAI	GTCTC	1 cut(s)	258
BsmBI	CGTCTC	1 cut(s)	258
BsnI	GGCC	6 cut(s)	56, 64, 113, 127, 526, 560
Bsp143I	GATC	4 cut(s)	38, 181, 237, 580
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	6 cut(s)	56, 64, 113, 127, 526, 560
BspCNI	CTCAG	3 cut(s)	25, 365, 382
BspDI	ATCGAT	1 cut(s)	579
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	3 cut(s)	183, 640, 709
BspPI	GGATC	3 cut(s)	46, 176, 189
BspT107I	GGYRCC	2 cut(s)	638, 707
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	709
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	4 cut(s)	38, 181, 237, 580
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	3 cut(s)	199, 295, 469
Bst6I	CTCTTC	2 cut(s)	366, 414
BstDEI	CTNAG	4 cut(s)	33, 102, 352, 390
BstF5I	GGATG	2 cut(s)	158, 182
BstH2I	RGCGCY	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	4 cut(s)	41, 184, 240, 583
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	4 cut(s)	38, 181, 237, 580
BstMCI	CGRYCG	1 cut(s)	583
BstNI	CCWGG	1 cut(s)	693
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	2 cut(s)	127, 691
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	2 cut(s)	38, 181
BstYI	RGATCY	2 cut(s)	38, 181
Bsu15I	ATCGAT	1 cut(s)	579
BsuRI	GGCC	6 cut(s)	56, 64, 113, 127, 526, 560
BsuTUI	ATCGAT	1 cut(s)	579
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	158, 182
CaiI	CAGNNNCTG	2 cut(s)	488, 704
CciI	TCATGA	1 cut(s)	342
CfoI	GCGC	1 cut(s)	477
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	126, 524
ClaI	ATCGAT	1 cut(s)	579
Csp6I	GTAC	4 cut(s)	132, 612, 639, 708
CviAII	CATG	5 cut(s)	60, 286, 307, 343, 647
CviQI	GTAC	4 cut(s)	132, 612, 639, 708
DdeI	CTNAG	4 cut(s)	33, 102, 352, 390
DpnI	GATC	4 cut(s)	40, 183, 239, 582
DpnII	GATC	4 cut(s)	38, 181, 237, 580
EaeI	YGGCCR	2 cut(s)	111, 558
Eam1104I	CTCTTC	2 cut(s)	366, 414
EarI	CTCTTC	2 cut(s)	366, 414
Eco130I	CCWWGG	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	5 cut(s)	63, 289, 310, 346, 650
FatI	CATG	5 cut(s)	59, 285, 306, 342, 646
Fnu4HI	GCNGC	2 cut(s)	99, 558
FokI	GGATG	2 cut(s)	165, 189
Fsp4HI	GCNGC	2 cut(s)	99, 558
FspBI	CTAG	3 cut(s)	189, 329, 654
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	2 cut(s)	99, 558
GsuI	CTGGAG	1 cut(s)	429
HaeII	RGCGCY	1 cut(s)	478
HaeIII	GGCC	6 cut(s)	56, 64, 113, 127, 526, 560
HapII	CCGG	3 cut(s)	129, 185, 209
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	5 cut(s)	63, 289, 310, 346, 650
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	346, 386
HpaII	CCGG	3 cut(s)	129, 185, 209
HphI	GGTGA	1 cut(s)	679
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	3 cut(s)	237, 355, 391
Hpy188III	TCNNGA	9 cut(s)	42, 245, 263, 281, 343, 408, 601, 662, 749
Hpy8I	GTNNAC	1 cut(s)	134
HpyCH4III	ACNGT	3 cut(s)	199, 295, 469
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	206, 683, 728
HpyF3I	CTNAG	4 cut(s)	33, 102, 352, 390
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	5 cut(s)	63, 289, 310, 346, 650
HspAI	GCGC	1 cut(s)	475
KpnI	GGTACC	2 cut(s)	642, 711
Kzo9I	GATC	4 cut(s)	38, 181, 237, 580
LmnI	GCTCC	3 cut(s)	472, 695, 733
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	3 cut(s)	189, 329, 654
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	4 cut(s)	40, 183, 239, 582
MboI	GATC	4 cut(s)	38, 181, 237, 580
MboII	GAAGA	5 cut(s)	22, 205, 383, 431, 547
MflI	RGATCY	2 cut(s)	38, 181
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	4 cut(s)	165, 231, 257, 563
MluNI	TGGCCA	1 cut(s)	113
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	1 cut(s)	633
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	3 cut(s)	129, 185, 209
MspR9I	CCNGG	2 cut(s)	129, 693
MvaI	CCWGG	1 cut(s)	693
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	4 cut(s)	38, 181, 237, 580
NlaIII	CATG	5 cut(s)	63, 289, 310, 346, 650
NlaIV	GGNNCC	3 cut(s)	183, 640, 709
NmuCI	GTSAC	1 cut(s)	332
NspI	RCATGY	1 cut(s)	310
PagI	TCATGA	1 cut(s)	342
PciI	ACATGT	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	346, 386
PkrI	GCNGC	2 cut(s)	100, 559
Ple19I	CGATCG	1 cut(s)	583
PscI	ACATGT	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	3 cut(s)	183, 640, 709
PspPI	GGNCC	2 cut(s)	126, 524
PstNI	CAGNNNCTG	2 cut(s)	488, 704
PsuI	RGATCY	2 cut(s)	38, 181
PvuI	CGATCG	1 cut(s)	583
RsaI	GTAC	4 cut(s)	133, 613, 640, 709
RsaNI	GTAC	4 cut(s)	132, 612, 639, 708
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	2 cut(s)	99, 558
Sau3AI	GATC	4 cut(s)	38, 181, 237, 580
Sau96I	GGNCC	2 cut(s)	126, 524
ScrFI	CCNGG	2 cut(s)	129, 693
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	747
SmoI	CTYRAG	1 cut(s)	747
SpeI	ACTAGT	1 cut(s)	653
Sse9I	AATT	4 cut(s)	165, 231, 257, 563
SsiI	CCGC	1 cut(s)	557
SspI	AATATT	1 cut(s)	400
SspMI	CTAG	3 cut(s)	189, 329, 654
StyD4I	CCNGG	2 cut(s)	127, 691
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	3 cut(s)	199, 295, 469
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	4 cut(s)	201, 262, 579, 600
TasI	AATT	4 cut(s)	165, 231, 257, 563
TatI	WGTACW	1 cut(s)	611
TauI	GCSGC	1 cut(s)	560
TfiI	GAWTC	2 cut(s)	346, 386
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	4 cut(s)	177, 432, 456, 686
TspGWI	ACGGA	1 cut(s)	746
XapI	RAATTY	2 cut(s)	231, 257
XceI	RCATGY	1 cut(s)	310
XmaJI	CCTAGG	1 cut(s)	328
XspI	CTAG	3 cut(s)	189, 329, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.