Rh7DG211200

Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
20285572 .. 20287444
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG211200.1

Sequence Viewer

Length: 1113 bp
ATGCATGCACTTTTACTAGCTGATAATCTTCTCAAGCCCTACATTTCCCTGTCGTCCAGGGTAGGGGCGACCCGGCTCACCGTTCAATGCTCCGACTCCCTCAACTACTACAACTCTGTCTCCGAATGGCAGAGCTCCTGCTCCATTCTCGCCAGCAAGGTTGTCTCCTCCAAGCCTGAACAATCTGCTGAAACCATCGCTGACCTCTCGCCAGCACCTATGCACGGCGCAAAGCTGCGCGTGGCTTACCAGGGCGTTCCCGGCGCTTACTCGGAGGCTGCGGCCGGTAAAGCCTACCCAAACTGCGAGGCCATTCCCTGCGATCAATTCGAAGATGCTTTCCAGGCCGTGGAGCTCTGGATCGCCGACCGGGCCGTTTTGCCAATTGAAAACTCCCTCGGCGGCTCAATCCATCGGAATTACGATCTTCTCCTCCGCCACAGGCTCCACATTGTTGGTGAGGTCCATTTACTCGTCCACCACTGCCTCTTAGCACTTCCTGGGGTTCAACAAGACTGCTTGACCCGAGTCATCTCTCACTCTCAGGCCCTGGCCCAGTGCGAGCTCACTCTCACCAAGCTCGGCCTCAACGTCGAGCACGAAGCCGTCGACAACACCGCCGGGGCCGCTGAGTTCATCGCCGCCAACAACCTTCGGGACACCGCCGCAATCGCAAGCGCACGAGCCGCCGATATCTACGGCCTCAACATCCTCGCCGACGGTATCCAGGACGACTCGAGGAACGTAACCCGGTTTGTGATGCTTGCCCGGAAGCCCATAGTTGCCCTGACAGACCGGCCCTTCAAGACCAGTATCGTCTTCGCTCACGACAAAGGGACGTCGGTGCTATTCAAGGTGCTATCGGCGTTCGCCTTCAGGAACATCAGCTTGACCAAGATCGAGTCGCGGCCGCACCGCAACCGTCCGATCAGGTTGGTGAATGACTCGAACGAAGGGAGCTTCGAGTACTTGTTCTACATGGACTTCGAGGAGTCAATGGCCGAGGTTAGGACTCAGAATGCGTTAGAGGAGGTCCAAGAGTTCACGTCTTTCTTGAGGGTCCTTGGTAGCTACCCCAGGGATATGATCCCCTTGGTGTCCTTTGCGGGGTGA

Protein Analysis

370

Amino Acids

40.7

Weight (kDa)

5.85

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDT PF00800 81 - 258 1.1e-57 Prephenate dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 842
AccB7I CCANNNNNTGG 1 cut(s) 349
AccI GTMKAC 1 cut(s) 609
AccII CGCG 2 cut(s) 240, 907
AclWI GGATC 2 cut(s) 368, 1081
AcoI YGGCCR 3 cut(s) 282, 908, 999
AcuI CTGAAG 1 cut(s) 859
AcyI GRCGYC 1 cut(s) 839
AfaI GTAC 1 cut(s) 968
AfiI CCNNNNNNNGG 5 cut(s) 63, 224, 349, 1008, 1107
AgsI TTSAA 5 cut(s) 86, 389, 509, 805, 853
AjiI CACGTC 1 cut(s) 1047
AjnI CCWGG 7 cut(s) 56, 249, 342, 499, 549, 726, 1076
AluBI AGCT 9 cut(s) 20, 135, 235, 355, 565, 580, 888, 960, 1071
AluI AGCT 9 cut(s) 20, 135, 235, 355, 565, 580, 888, 960, 1071
Alw21I GWGCWC 4 cut(s) 137, 357, 567, 600
Alw26I GTCTC 2 cut(s) 124, 169
AlwI GGATC 2 cut(s) 368, 1081
AlwNI CAGNNNCTG 1 cut(s) 550
Ama87I CYCGRG 2 cut(s) 525, 736
ApeKI GCWGC 2 cut(s) 235, 278
AspLEI GCGC 4 cut(s) 230, 240, 266, 680
AspS9I GGNCC 8 cut(s) 372, 463, 547, 553, 624, 798, 1033, 1060
AsuC2I CCSGG 6 cut(s) 73, 261, 371, 622, 751, 769
AsuHPI GGTGA 4 cut(s) 70, 470, 565, 949
AsuII TTCGAA 1 cut(s) 330
AvaI CYCGRG 2 cut(s) 525, 736
AvaII GGWCC 3 cut(s) 463, 1033, 1060
BanII GRGCYC 3 cut(s) 137, 357, 567
BauI CACGAG 1 cut(s) 681
BbsI GAAGAC 1 cut(s) 811
Bbv12I GWGCWC 4 cut(s) 137, 357, 567, 600
BbvI GCAGC 2 cut(s) 222, 265
BccI CCATC 2 cut(s) 203, 420
BceAI ACGGC 5 cut(s) 241, 332, 359, 590, 715
BciT130I CCWGG 7 cut(s) 58, 251, 344, 501, 551, 728, 1078
BciVI GTATCC 1 cut(s) 734
BcnI CCSGG 6 cut(s) 73, 261, 371, 622, 751, 769
BcoDI GTCTC 2 cut(s) 124, 169
BfaI CTAG 1 cut(s) 17
BfoI RGCGCY 1 cut(s) 267
BfuI GTATCC 1 cut(s) 734
BglI GCCNNNNNGGC 1 cut(s) 371
BmcAI AGTACT 1 cut(s) 968
Bme18I GGWCC 3 cut(s) 463, 1033, 1060
BmeT110I CYCGRG 2 cut(s) 525, 736
BmgBI CACGTC 1 cut(s) 1047
BmgT120I GGNCC 8 cut(s) 372, 463, 547, 553, 624, 798, 1033, 1060
BmiI GGNNCC 3 cut(s) 446, 625, 1061
BmrI ACTGGG 1 cut(s) 550
BmsI GCATC 2 cut(s) 325, 750
BmuI ACTGGG 1 cut(s) 550
BoxI GACNNNNGTC 1 cut(s) 527
BpiI GAAGAC 1 cut(s) 811
Bpu14I TTCGAA 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 17, 1075
BpuMI CCSGG 6 cut(s) 73, 261, 371, 622, 751, 769
BsaHI GRCGYC 1 cut(s) 839
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 224, 349, 1008, 1107
Bse118I RCCGGY 2 cut(s) 284, 795
Bse1I ACTGG 2 cut(s) 556, 810
BseBI CCWGG 7 cut(s) 58, 251, 344, 501, 551, 728, 1078
BseGI GGATG 1 cut(s) 708
BseLI CCNNNNNNNGG 5 cut(s) 63, 224, 349, 1008, 1107
BseMII CTCAG 3 cut(s) 557, 621, 1028
BseNI ACTGG 2 cut(s) 556, 810
BseRI GAGGAG 4 cut(s) 157, 422, 1004, 1043
BseX3I CGGCCG 2 cut(s) 282, 908
BseXI GCAGC 2 cut(s) 222, 265
Bsh1236I CGCG 2 cut(s) 240, 907
Bsh1285I CGRYCG 3 cut(s) 285, 370, 911
BsiEI CGRYCG 3 cut(s) 285, 370, 911
BsiHKAI GWGCWC 4 cut(s) 137, 357, 567, 600
BsiHKCI CYCGRG 2 cut(s) 525, 736
BsiSI CCGG 8 cut(s) 73, 261, 285, 370, 621, 751, 769, 796
BslFI GGGAC 2 cut(s) 671, 850
BslI CCNNNNNNNGG 5 cut(s) 63, 224, 349, 1008, 1107
BsmAI GTCTC 2 cut(s) 124, 169
BsmFI GGGAC 2 cut(s) 671, 850
BsmI GAATGC 1 cut(s) 1024
BsoBI CYCGRG 2 cut(s) 525, 736
Bsp119I TTCGAA 1 cut(s) 330
Bsp1286I GDGCHC 4 cut(s) 137, 357, 567, 600
Bsp143I GATC 6 cut(s) 322, 360, 424, 897, 927, 1086
BspCNI CTCAG 3 cut(s) 556, 622, 1027
BspFNI CGCG 2 cut(s) 240, 907
BspLI GGNNCC 3 cut(s) 446, 625, 1061
BspPI GGATC 2 cut(s) 368, 1081
BspT104I TTCGAA 1 cut(s) 330
BsrFI RCCGGY 2 cut(s) 284, 795
BsrI ACTGG 2 cut(s) 556, 810
BssAI RCCGGY 2 cut(s) 284, 795
BssMI GATC 6 cut(s) 322, 360, 424, 897, 927, 1086
BssNI GRCGYC 1 cut(s) 839
BssSI CACGAG 1 cut(s) 681
BssT1I CCWWGG 2 cut(s) 1063, 1092
Bst2BI CACGAG 1 cut(s) 681
Bst2UI CCWGG 7 cut(s) 58, 251, 344, 501, 551, 728, 1078
Bst4CI ACNGT 3 cut(s) 82, 722, 923
BstACI GRCGYC 1 cut(s) 839
BstBI TTCGAA 1 cut(s) 330
BstC8I GCNNGC 6 cut(s) 6, 154, 213, 563, 676, 765
BstDEI CTNAG 4 cut(s) 490, 543, 630, 1014
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 708
BstFNI CGCG 2 cut(s) 240, 907
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 4 cut(s) 230, 240, 266, 680
BstKTI GATC 6 cut(s) 325, 363, 427, 900, 930, 1089
BstMAI GTCTC 2 cut(s) 124, 169
BstMBI GATC 6 cut(s) 322, 360, 424, 897, 927, 1086
BstMCI CGRYCG 3 cut(s) 285, 370, 911
BstMWI GCNNNNNNNGC 7 cut(s) 261, 290, 344, 371, 626, 671, 686
BstNI CCWGG 7 cut(s) 58, 251, 344, 501, 551, 728, 1078
BstNSI RCATGY 1 cut(s) 8
BstPAI GACNNNNGTC 1 cut(s) 527
BstUI CGCG 2 cut(s) 240, 907
BstV1I GCAGC 2 cut(s) 222, 265
BstV2I GAAGAC 1 cut(s) 811
BstXI CCANNNNNNTGG 1 cut(s) 455
BstZI CGGCCG 2 cut(s) 282, 908
BsuI GTATCC 1 cut(s) 734
BtgI CCRYGG 1 cut(s) 348
BtgZI GCGATG 2 cut(s) 181, 622
BtrI CACGTC 1 cut(s) 1047
BtsCI GGATG 1 cut(s) 708
BtsI GCAGTG 1 cut(s) 481
BtsIMutI CAGTG 2 cut(s) 481, 563
Cac8I GCNNGC 6 cut(s) 6, 154, 213, 563, 676, 765
CaiI CAGNNNCTG 1 cut(s) 550
CciNI GCGGCCGC 1 cut(s) 908
CfoI GCGC 4 cut(s) 230, 240, 266, 680
Cfr10I RCCGGY 2 cut(s) 284, 795
Cfr13I GGNCC 8 cut(s) 372, 463, 547, 553, 624, 798, 1033, 1060
Csp6I GTAC 1 cut(s) 967
CviAII CATG 2 cut(s) 5, 979
CviQI GTAC 1 cut(s) 967
DdeI CTNAG 4 cut(s) 490, 543, 630, 1014
DpnI GATC 6 cut(s) 324, 362, 426, 899, 929, 1088
DpnII GATC 6 cut(s) 322, 360, 424, 897, 927, 1086
EaeI YGGCCR 3 cut(s) 282, 908, 999
EagI CGGCCG 2 cut(s) 282, 908
EciI GGCGGA 1 cut(s) 425
Ecl136II GAGCTC 3 cut(s) 135, 355, 565
EclXI CGGCCG 2 cut(s) 282, 908
Eco130I CCWWGG 2 cut(s) 1063, 1092
Eco24I GRGCYC 3 cut(s) 137, 357, 567
Eco32I GATATC 1 cut(s) 694
Eco47I GGWCC 3 cut(s) 463, 1033, 1060
Eco52I CGGCCG 2 cut(s) 282, 908
Eco53kI GAGCTC 3 cut(s) 135, 355, 565
Eco57I CTGAAG 1 cut(s) 859
Eco88I CYCGRG 2 cut(s) 525, 736
EcoICRI GAGCTC 3 cut(s) 135, 355, 565
EcoO109I RGGNCCY 2 cut(s) 547, 1060
EcoRII CCWGG 7 cut(s) 56, 249, 342, 499, 549, 726, 1076
EcoRV GATATC 1 cut(s) 694
EcoT14I CCWWGG 2 cut(s) 1063, 1092
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 3 cut(s) 137, 357, 567
ErhI CCWWGG 2 cut(s) 1063, 1092
FaeI CATG 2 cut(s) 8, 982
FaiI YATR 5 cut(s) 6, 221, 779, 980, 1085
FaqI GGGAC 2 cut(s) 671, 850
FatI CATG 2 cut(s) 4, 978
FauI CCCGC 1 cut(s) 1099
FblI GTMKAC 1 cut(s) 609
FokI GGATG 1 cut(s) 695
FriOI GRGCYC 3 cut(s) 137, 357, 567
FspBI CTAG 1 cut(s) 17
GlaI GCGC 4 cut(s) 229, 239, 265, 679
HaeII RGCGCY 1 cut(s) 267
HapII CCGG 8 cut(s) 73, 261, 285, 370, 621, 751, 769, 796
HhaI GCGC 4 cut(s) 230, 240, 266, 680
Hin1I GRCGYC 1 cut(s) 839
Hin1II CATG 2 cut(s) 8, 982
Hin6I GCGC 4 cut(s) 228, 238, 264, 678
HinP1I GCGC 4 cut(s) 228, 238, 264, 678
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 7 cut(s) 95, 528, 734, 902, 944, 992, 1012
HpaII CCGG 8 cut(s) 73, 261, 285, 370, 621, 751, 769, 796
HphI GGTGA 4 cut(s) 70, 470, 565, 949
Hpy166II GTNNAC 3 cut(s) 478, 610, 1044
Hpy188I TCNGA 6 cut(s) 94, 124, 274, 417, 927, 1017
Hpy188III TCNNGA 6 cut(s) 358, 656, 805, 827, 877, 1054
Hpy8I GTNNAC 3 cut(s) 478, 610, 1044
Hpy99I CGWCG 4 cut(s) 596, 611, 722, 844
HpyAV CCTTC 4 cut(s) 662, 811, 883, 947
HpyCH4III ACNGT 3 cut(s) 82, 722, 923
HpyCH4IV ACGT 4 cut(s) 591, 744, 839, 1046
HpyCH4V TGCA 3 cut(s) 4, 8, 223
HpyF10VI GCNNNNNNNGC 7 cut(s) 261, 290, 344, 371, 626, 671, 686
HpyF3I CTNAG 4 cut(s) 490, 543, 630, 1014
HpySE526I ACGT 4 cut(s) 591, 744, 839, 1046
Hsp92I GRCGYC 1 cut(s) 839
Hsp92II CATG 2 cut(s) 8, 982
HspAI GCGC 4 cut(s) 228, 238, 264, 678
Kzo9I GATC 6 cut(s) 322, 360, 424, 897, 927, 1086
LmnI GCTCC 6 cut(s) 95, 140, 146, 352, 450, 957
Lsp1109I GCAGC 2 cut(s) 222, 265
LweI GCATC 2 cut(s) 325, 750
MaeI CTAG 1 cut(s) 17
MaeII ACGT 4 cut(s) 591, 744, 839, 1046
MaeIII GTNAC 1 cut(s) 745
MalI GATC 6 cut(s) 324, 362, 426, 899, 929, 1088
MboI GATC 6 cut(s) 322, 360, 424, 897, 927, 1086
MboII GAAGA 4 cut(s) 20, 344, 419, 811
MfeI CAATTG 1 cut(s) 384
MhlI GDGCHC 4 cut(s) 137, 357, 567, 600
MluCI AATT 3 cut(s) 326, 384, 418
MlyI GAGTC 7 cut(s) 89, 537, 728, 911, 938, 1001, 1006
MmeI TCCRAC 1 cut(s) 117
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 8 cut(s) 73, 261, 285, 370, 621, 751, 769, 796
MunI CAATTG 1 cut(s) 384
Mva1269I GAATGC 1 cut(s) 1024
MvaI CCWGG 7 cut(s) 58, 251, 344, 501, 551, 728, 1078
MvnI CGCG 2 cut(s) 240, 907
MwoI GCNNNNNNNGC 7 cut(s) 261, 290, 344, 371, 626, 671, 686
NciI CCSGG 6 cut(s) 73, 261, 371, 622, 751, 769
NdeII GATC 6 cut(s) 322, 360, 424, 897, 927, 1086
NlaIII CATG 2 cut(s) 8, 982
NlaIV GGNNCC 3 cut(s) 446, 625, 1061
NmeAIII GCCGAG 3 cut(s) 378, 561, 1027
NotI GCGGCCGC 1 cut(s) 908
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
NspV TTCGAA 1 cut(s) 330
PaeI GCATGC 1 cut(s) 8
PaeR7I CTCGAG 1 cut(s) 736
PasI CCCWGGG 1 cut(s) 1077
PcsI WCGNNNNNNNCGW 3 cut(s) 588, 597, 606
PctI GAATGC 1 cut(s) 1024
PflMI CCANNNNNTGG 1 cut(s) 349
PfoI TCCNGGA 1 cut(s) 726
PleI GAGTC 7 cut(s) 89, 536, 728, 910, 938, 1000, 1006
PpsI GAGTC 7 cut(s) 89, 536, 728, 910, 938, 1000, 1006
PpuMI RGGWCCY 1 cut(s) 1060
PshAI GACNNNNGTC 1 cut(s) 527
Psp124BI GAGCTC 3 cut(s) 137, 357, 567
Psp5II RGGWCCY 1 cut(s) 1060
Psp6I CCWGG 7 cut(s) 56, 249, 342, 499, 549, 726, 1076
PspGI CCWGG 7 cut(s) 56, 249, 342, 499, 549, 726, 1076
PspN4I GGNNCC 3 cut(s) 446, 625, 1061
PspPI GGNCC 8 cut(s) 372, 463, 547, 553, 624, 798, 1033, 1060
PspPPI RGGWCCY 1 cut(s) 1060
PspXI VCTCGAGB 1 cut(s) 736
PstNI CAGNNNCTG 1 cut(s) 550
RsaI GTAC 1 cut(s) 968
RsaNI GTAC 1 cut(s) 967
SacI GAGCTC 3 cut(s) 137, 357, 567
SalI GTCGAC 1 cut(s) 608
Sau3AI GATC 6 cut(s) 322, 360, 424, 897, 927, 1086
Sau96I GGNCC 8 cut(s) 372, 463, 547, 553, 624, 798, 1033, 1060
ScaI AGTACT 1 cut(s) 968
SchI GAGTC 7 cut(s) 89, 537, 728, 911, 938, 1001, 1006
SduI GDGCHC 4 cut(s) 137, 357, 567, 600
SfaNI GCATC 2 cut(s) 325, 750
Sfr274I CTCGAG 1 cut(s) 736
SfuI TTCGAA 1 cut(s) 330
SinI GGWCC 3 cut(s) 463, 1033, 1060
SlaI CTCGAG 1 cut(s) 736
SmlI CTYRAG 3 cut(s) 32, 736, 1054
SmoI CTYRAG 3 cut(s) 32, 736, 1054
SphI GCATGC 1 cut(s) 8
Sse9I AATT 3 cut(s) 326, 384, 418
SspMI CTAG 1 cut(s) 17
SstI GAGCTC 3 cut(s) 137, 357, 567
StyI CCWWGG 2 cut(s) 1063, 1092
TaaI ACNGT 3 cut(s) 82, 722, 923
TaiI ACGT 4 cut(s) 594, 747, 842, 1049
TaqI TCGA 8 cut(s) 330, 594, 609, 737, 900, 947, 963, 987
TasI AATT 3 cut(s) 326, 384, 418
TatI WGTACW 1 cut(s) 966
TauI GCSGC 8 cut(s) 284, 405, 629, 644, 668, 689, 910, 913
TscAI CASTG 2 cut(s) 488, 563
TseI GCWGC 2 cut(s) 235, 278
TspDTI ATGAA 1 cut(s) 625
TspRI CASTG 2 cut(s) 488, 563
Van91I CCANNNNNTGG 1 cut(s) 349
VpaK11BI GGWCC 3 cut(s) 463, 1033, 1060
XceI RCATGY 1 cut(s) 8
XhoI CTCGAG 1 cut(s) 736
XmiI GTMKAC 1 cut(s) 609
XspI CTAG 1 cut(s) 17
ZraI GACGTC 1 cut(s) 840
ZrmI AGTACT 1 cut(s) 968
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.