AT3G44720

Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
16271511 .. 16273413
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44720.1

Sequence Viewer

Length: 1275 bp
ATGCAAGCCGCAACGTCGTGTGATCTCAAGTTCCGATCAACAGATCCGACGTCTAGGAACAAATGTTTCTCCCACGCGATTCCAAAGCGCGTGGCTGTTACGTGCGGTTATAGGTCGGAGTCGTTTAGCTTCCCTAACGGTGTCTCCGTGAGTCGATCTGATTGGCAAAGCTCATGTGCCATTTTATCTAGTAAAGTTGCTTCTGTTGAAAATACCGGTGGTTTAGCGGACAAAATCGCCGCCGTTAATGGTCACACGAACGGCTCTGTGAATCTTGGTCTCGTCGCCGTTGAGTCAACTAACGGAAAGTTAGCTCCTGCTCAGCCGTTGACTATTACTGATCTATCTCCGGCACCGTTGCATGGTTCTAGTCTACGTGTAGCTTACCAAGGCGTTCCCGGAGCTTACTCGGAAGCAGCTGCCGGAAAAGCTTATCCCAATTGCGACGCCATTCCTTGTGACCAGTTTGACGTTGCTTTTCAGGCGGTGGAGCTTTGGATCGCTGATCGAGCTGTGCTTCCGGTGGAGAACTCACTCGGTGGTTCGATCCATCGAAACTATGATCTTCTTCTCCGTCACCGTCTTCACATCGTTGGAGAAGTTCAGATTCCGGTCCACCATTGCCTCCTCGCACTCCCGGGAGTCCGAACTGACTGTGTTTCGCGGGTGATCTCTCACCCGCAAGCCCTAGCGCAGACGGAACACTCCCTCGACGTCCTTACACCACATGCAGCGCGTGAGGCTTTCCATGACACAGCGGCTGCTGCGGAGTATATCTCAGCTAACGACCTACATGACACGGCGGCTGTGGCGAGCGCACGCGCCGCTGAGCTTTACAACCTCCAGATATTAGCGGATGGGATTCAAGACGACCCGGGGAACGTCACTCGTTTCCTAATGTTGGCGCGTGAGCCTATAATCCCACGCACGGACCGGCCATTCAAGACTAGCATCGTCTTTGCTGCCCAAGAGCACAAAGGAACTAGCGTCCTCTTTAAAGTCCTCTCGGCTTTCGCTTTCAGAGACATTAGCCTGACCAAGATCGAGTCCCGGCCTCACCATAACCGCCCGCTTAGGGTTGTTGGTGACGGGAGCTTTGGGACGTCGAAGAACTTCGAGTACATGTTTTACGTGGATTTTGAGGCATCGATGGCTGAGCCGCGTGCACAGAACGCGCTTGCGGAGGTTCAAGAGTACACGTCGTTCCTAAGGGTGCTGGGAAGTTACCCCATGGATATGACACCATGGTCCATGACATCCACAGAAGAAGCATGA

Protein Analysis

424

Amino Acids

45.92

Weight (kDa)

6.05

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDT PF00800 127 - 304 2.5e-58 Prephenate dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1246
AatII GACGTC 3 cut(s) 53, 717, 1106
AccB1I GGYRCC 1 cut(s) 352
AccI GTMKAC 1 cut(s) 373
AccII CGCG 8 cut(s) 77, 90, 664, 736, 822, 907, 1162, 1175
AclWI GGATC 3 cut(s) 38, 506, 541
AcoI YGGCCR 1 cut(s) 935
AcyI GRCGYC 4 cut(s) 50, 447, 714, 1103
AdeI CACNNNGTG 1 cut(s) 539
AfaI GTAC 2 cut(s) 1121, 1196
AfiI CCNNNNNNNGG 4 cut(s) 362, 901, 928, 1075
AflIII ACRYGT 3 cut(s) 376, 1122, 1197
AgeI ACCGGT 1 cut(s) 215
AgsI TTSAA 4 cut(s) 209, 866, 943, 1190
AjiI CACGTC 1 cut(s) 1200
Alw21I GWGCWC 2 cut(s) 975, 1168
Alw26I GTCTC 3 cut(s) 148, 284, 1017
Alw44I GTGCAC 1 cut(s) 1164
AlwI GGATC 3 cut(s) 38, 506, 541
AlwNI CAGNNNCTG 1 cut(s) 761
Ama87I CYCGRG 2 cut(s) 637, 874
AoxI GGCC 2 cut(s) 935, 1052
ApaLI GTGCAC 1 cut(s) 1164
ApeKI GCWGC 6 cut(s) 416, 419, 731, 761, 764, 962
ArsI GACNNNNNNTTYG 2 cut(s) 1079, 1111
AsiGI ACCGGT 1 cut(s) 215
Asp700I GAANNNNTTC 1 cut(s) 1112
AspLEI GCGC 7 cut(s) 90, 694, 736, 818, 824, 907, 1177
AspS9I GGNCC 3 cut(s) 613, 931, 1248
AsuC2I CCSGG 6 cut(s) 399, 638, 639, 875, 876, 1051
AsuHPI GGTGA 5 cut(s) 569, 668, 679, 1049, 1097
AvaI CYCGRG 2 cut(s) 637, 874
AvaII GGWCC 3 cut(s) 613, 931, 1248
AxyI CCTNAGG 1 cut(s) 1208
BaeGI GKGCMC 1 cut(s) 1168
BanI GGYRCC 1 cut(s) 352
BarI GAAGNNNNNNTAC 2 cut(s) 184, 216
BbsI GAAGAC 1 cut(s) 575
Bbv12I GWGCWC 2 cut(s) 975, 1168
BbvI GCAGC 6 cut(s) 406, 428, 743, 748, 751, 949
BccI CCATC 3 cut(s) 558, 851, 1144
BceAI ACGGC 5 cut(s) 227, 272, 277, 310, 816
BcnI CCSGG 6 cut(s) 399, 638, 639, 875, 876, 1051
BcoDI GTCTC 3 cut(s) 148, 284, 1017
BfaI CTAG 6 cut(s) 54, 189, 369, 689, 948, 984
BlpI GCTNAGC 3 cut(s) 321, 828, 1155
Bme1390I CCNGG 6 cut(s) 399, 638, 639, 875, 876, 1051
Bme18I GGWCC 3 cut(s) 613, 931, 1248
BmeT110I CYCGRG 2 cut(s) 637, 874
BmgBI CACGTC 1 cut(s) 1200
BmgT120I GGNCC 3 cut(s) 613, 931, 1248
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 6 cut(s) 399, 638, 639, 875, 876, 1051
BmsI GCATC 2 cut(s) 960, 1154
BpiI GAAGAC 1 cut(s) 575
BplI GAGNNNNNCTC 2 cut(s) 761, 793
BpmI CTGGAG 1 cut(s) 827
Bpu10I CCTNAGC 1 cut(s) 1073
Bpu1102I GCTNAGC 3 cut(s) 321, 828, 1155
BpuEI CTTGAG 1 cut(s) 11
BpuMI CCSGG 6 cut(s) 399, 638, 639, 875, 876, 1051
Bsa29I ATCGAT 1 cut(s) 1148
BsaAI YACGTR 3 cut(s) 102, 377, 1132
BsaHI GRCGYC 4 cut(s) 50, 447, 714, 1103
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 6 cut(s) 388, 637, 874, 875, 1230, 1244
BsaWI WCCGGW 3 cut(s) 215, 520, 610
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 4 cut(s) 362, 901, 928, 1075
Bse118I RCCGGY 2 cut(s) 215, 933
Bse1I ACTGG 1 cut(s) 463
Bse21I CCTNAGG 1 cut(s) 1208
Bse3DI GCAATG 1 cut(s) 619
BseCI ATCGAT 1 cut(s) 1148
BseDI CCNNGG 6 cut(s) 388, 637, 874, 875, 1230, 1244
BseGI GGATG 2 cut(s) 862, 1256
BseLI CCNNNNNNNGG 4 cut(s) 362, 901, 928, 1075
BseMI GCAATG 1 cut(s) 619
BseMII CTCAG 4 cut(s) 335, 792, 819, 1146
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 1 cut(s) 617
BseSI GKGCMC 1 cut(s) 1168
BseXI GCAGC 6 cut(s) 406, 428, 743, 748, 751, 949
BseYI CCCAGC 1 cut(s) 1216
Bsh1236I CGCG 8 cut(s) 77, 90, 664, 736, 822, 907, 1162, 1175
BshFI GGCC 2 cut(s) 937, 1054
BshNI GGYRCC 1 cut(s) 352
BshTI ACCGGT 1 cut(s) 215
BshVI ATCGAT 1 cut(s) 1148
BsiHKAI GWGCWC 2 cut(s) 975, 1168
BsiHKCI CYCGRG 2 cut(s) 637, 874
BslFI GGGAC 2 cut(s) 1033, 1114
BslI CCNNNNNNNGG 4 cut(s) 362, 901, 928, 1075
BsmAI GTCTC 3 cut(s) 148, 284, 1017
BsmFI GGGAC 2 cut(s) 1033, 1114
BsnI GGCC 2 cut(s) 937, 1054
Bso31I GGTCTC 1 cut(s) 284
BsoBI CYCGRG 2 cut(s) 637, 874
Bsp1286I GDGCHC 2 cut(s) 975, 1168
Bsp1720I GCTNAGC 3 cut(s) 321, 828, 1155
Bsp19I CCATGG 2 cut(s) 1230, 1244
BspANI GGCC 2 cut(s) 937, 1054
BspCNI CTCAG 4 cut(s) 334, 791, 820, 1147
BspDI ATCGAT 1 cut(s) 1148
BspFNI CGCG 8 cut(s) 77, 90, 664, 736, 822, 907, 1162, 1175
BspLI GGNNCC 1 cut(s) 354
BspPI GGATC 3 cut(s) 38, 506, 541
BspT107I GGYRCC 1 cut(s) 352
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 619
BsrFI RCCGGY 2 cut(s) 215, 933
BsrI ACTGG 1 cut(s) 463
BssAI RCCGGY 2 cut(s) 215, 933
BssECI CCNNGG 6 cut(s) 388, 637, 874, 875, 1230, 1244
BssNI GRCGYC 4 cut(s) 50, 447, 714, 1103
BssT1I CCWWGG 3 cut(s) 388, 1230, 1244
Bst4CI ACNGT 4 cut(s) 140, 357, 581, 656
BstACI GRCGYC 4 cut(s) 50, 447, 714, 1103
BstBAI YACGTR 3 cut(s) 102, 377, 1132
BstC8I GCNNGC 7 cut(s) 6, 684, 814, 820, 1070, 1164, 1179
BstDEI CTNAG 6 cut(s) 321, 778, 828, 1073, 1155, 1208
BstDSI CCRYGG 2 cut(s) 1230, 1244
BstF5I GGATG 2 cut(s) 862, 1256
BstFNI CGCG 8 cut(s) 77, 90, 664, 736, 822, 907, 1162, 1175
BstHHI GCGC 7 cut(s) 90, 694, 736, 818, 824, 907, 1177
BstMAI GTCTC 3 cut(s) 148, 284, 1017
BstMWI GCNNNNNNNGC 9 cut(s) 428, 482, 509, 740, 764, 809, 824, 1151, 1172
BstNSI RCATGY 2 cut(s) 731, 1126
BstSCI CCNGG 6 cut(s) 397, 636, 637, 873, 874, 1049
BstSLI GKGCMC 1 cut(s) 1168
BstUI CGCG 8 cut(s) 77, 90, 664, 736, 822, 907, 1162, 1175
BstV1I GCAGC 6 cut(s) 406, 428, 743, 748, 751, 949
BstV2I GAAGAC 1 cut(s) 575
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 1148
Bsu36I CCTNAGG 1 cut(s) 1208
BsuRI GGCC 2 cut(s) 937, 1054
BsuTUI ATCGAT 1 cut(s) 1148
BtgI CCRYGG 2 cut(s) 1230, 1244
BtrI CACGTC 1 cut(s) 1200
BtsCI GGATG 2 cut(s) 862, 1256
Cac8I GCNNGC 7 cut(s) 6, 684, 814, 820, 1070, 1164, 1179
CaiI CAGNNNCTG 1 cut(s) 761
CfoI GCGC 7 cut(s) 90, 694, 736, 818, 824, 907, 1177
Cfr10I RCCGGY 2 cut(s) 215, 933
Cfr13I GGNCC 3 cut(s) 613, 931, 1248
Cfr9I CCCGGG 2 cut(s) 637, 874
ClaI ATCGAT 1 cut(s) 1148
CpoI CGGWCCG 1 cut(s) 931
CseI GACGC 2 cut(s) 455, 976
Csp6I GTAC 2 cut(s) 1120, 1195
CspAI ACCGGT 1 cut(s) 215
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CspI CGGWCCG 1 cut(s) 931
CviQI GTAC 2 cut(s) 1120, 1195
DdeI CTNAG 6 cut(s) 321, 778, 828, 1073, 1155, 1208
DraI TTTAAA 1 cut(s) 997
DraIII CACNNNGTG 1 cut(s) 539
DrdI GACNNNNNNGTC 1 cut(s) 1246
DseDI GACNNNNNNGTC 1 cut(s) 1246
EaeI YGGCCR 1 cut(s) 935
Eco130I CCWWGG 3 cut(s) 388, 1230, 1244
Eco31I GGTCTC 1 cut(s) 284
Eco47I GGWCC 3 cut(s) 613, 931, 1248
Eco81I CCTNAGG 1 cut(s) 1208
Eco88I CYCGRG 2 cut(s) 637, 874
EcoT14I CCWWGG 3 cut(s) 388, 1230, 1244
ErhI CCWWGG 3 cut(s) 388, 1230, 1244
FaqI GGGAC 2 cut(s) 1033, 1114
FauI CCCGC 3 cut(s) 657, 687, 1077
FblI GTMKAC 1 cut(s) 373
FokI GGATG 2 cut(s) 869, 1243
FspBI CTAG 6 cut(s) 54, 189, 369, 689, 948, 984
GlaI GCGC 7 cut(s) 89, 693, 735, 817, 823, 906, 1176
GsaI CCCAGC 1 cut(s) 1220
GsuI CTGGAG 1 cut(s) 827
HaeIII GGCC 2 cut(s) 937, 1054
HgaI GACGC 2 cut(s) 455, 976
HhaI GCGC 7 cut(s) 90, 694, 736, 818, 824, 907, 1177
Hin1I GRCGYC 4 cut(s) 50, 447, 714, 1103
Hin6I GCGC 7 cut(s) 88, 692, 734, 816, 822, 905, 1175
HinP1I GCGC 7 cut(s) 88, 692, 734, 816, 822, 905, 1175
HincII GTYRAC 2 cut(s) 297, 330
HindII GTYRAC 2 cut(s) 297, 330
HindIII AAGCTT 1 cut(s) 429
HinfI GANTC 9 cut(s) 79, 119, 151, 271, 293, 607, 642, 862, 1046
HphI GGTGA 5 cut(s) 569, 668, 679, 1049, 1097
Hpy166II GTNNAC 6 cut(s) 297, 330, 374, 616, 1166, 1197
Hpy188I TCNGA 8 cut(s) 35, 48, 118, 160, 412, 606, 647, 1022
Hpy188III TCNNGA 4 cut(s) 844, 866, 943, 1190
Hpy8I GTNNAC 6 cut(s) 297, 330, 374, 616, 1166, 1197
Hpy99I CGWCG 7 cut(s) 19, 52, 287, 449, 716, 1108, 1204
HpyCH4III ACNGT 4 cut(s) 140, 357, 581, 656
HpyCH4V TGCA 4 cut(s) 4, 361, 731, 1166
HpyF10VI GCNNNNNNNGC 9 cut(s) 428, 482, 509, 740, 764, 809, 824, 1151, 1172
HpyF3I CTNAG 6 cut(s) 321, 778, 828, 1073, 1155, 1208
Hsp92I GRCGYC 4 cut(s) 50, 447, 714, 1103
HspAI GCGC 7 cut(s) 88, 692, 734, 816, 822, 905, 1175
LmnI GCTCC 4 cut(s) 319, 401, 490, 1092
Lsp1109I GCAGC 6 cut(s) 406, 428, 743, 748, 751, 949
LweI GCATC 2 cut(s) 960, 1154
MaeI CTAG 6 cut(s) 54, 189, 369, 689, 948, 984
MaeIII GTNAC 7 cut(s) 97, 251, 458, 575, 883, 1085, 1223
MboII GAAGA 4 cut(s) 557, 560, 575, 1120
MfeI CAATTG 1 cut(s) 439
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 2 cut(s) 975, 1168
MluCI AATT 1 cut(s) 439
MlyI GAGTC 5 cut(s) 128, 160, 302, 651, 1055
MmeI TCCRAC 3 cut(s) 71, 96, 574
MroXI GAANNNNTTC 1 cut(s) 1112
MseI TTAA 2 cut(s) 246, 996
MslI CAYNNNNRTG 1 cut(s) 1235
MspA1I CMGCKG 3 cut(s) 419, 758, 827
MspR9I CCNGG 6 cut(s) 399, 638, 639, 875, 876, 1051
MunI CAATTG 1 cut(s) 439
MvnI CGCG 8 cut(s) 77, 90, 664, 736, 822, 907, 1162, 1175
MwoI GCNNNNNNNGC 9 cut(s) 428, 482, 509, 740, 764, 809, 824, 1151, 1172
NciI CCSGG 6 cut(s) 399, 638, 639, 875, 876, 1051
NcoI CCATGG 2 cut(s) 1230, 1244
NlaIV GGNNCC 1 cut(s) 354
NmeAIII GCCGAG 1 cut(s) 986
NmuCI GTSAC 5 cut(s) 251, 458, 575, 883, 1085
NspI RCATGY 2 cut(s) 731, 1126
PciI ACATGT 1 cut(s) 1122
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 1112
PfeI GAWTC 4 cut(s) 79, 271, 607, 862
PfoI TCCNGGA 1 cut(s) 397
PinAI ACCGGT 1 cut(s) 215
PleI GAGTC 5 cut(s) 127, 159, 301, 650, 1054
PpsI GAGTC 5 cut(s) 127, 159, 301, 650, 1054
Ppu21I YACGTR 3 cut(s) 102, 377, 1132
PscI ACATGT 1 cut(s) 1122
PspFI CCCAGC 1 cut(s) 1216
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 3 cut(s) 613, 931, 1248
PsrI GAACNNNNNNTAC 4 cut(s) 1103, 1135, 1187, 1219
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 2 cut(s) 1121, 1196
RsaNI GTAC 2 cut(s) 1120, 1195
RseI CAYNNNNRTG 1 cut(s) 1235
Rsr2I CGGWCCG 1 cut(s) 931
RsrII CGGWCCG 1 cut(s) 931
SaqAI TTAA 2 cut(s) 246, 996
Sau96I GGNCC 3 cut(s) 613, 931, 1248
SchI GAGTC 5 cut(s) 128, 160, 302, 651, 1055
ScrFI CCNGG 6 cut(s) 399, 638, 639, 875, 876, 1051
SduI GDGCHC 2 cut(s) 975, 1168
SfaNI GCATC 2 cut(s) 960, 1154
SinI GGWCC 3 cut(s) 613, 931, 1248
SmaI CCCGGG 2 cut(s) 639, 876
SmiMI CAYNNNNRTG 1 cut(s) 1235
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 1 cut(s) 439
SspMI CTAG 6 cut(s) 54, 189, 369, 689, 948, 984
StyD4I CCNGG 6 cut(s) 397, 636, 637, 873, 874, 1049
StyI CCWWGG 3 cut(s) 388, 1230, 1244
TaaI ACNGT 4 cut(s) 140, 357, 581, 656
TaqI TCGA 9 cut(s) 154, 508, 545, 553, 711, 1044, 1106, 1116, 1148
TasI AATT 1 cut(s) 439
TatI WGTACW 2 cut(s) 1119, 1194
TauI GCSGC 6 cut(s) 11, 242, 761, 806, 827, 1162
TfiI GAWTC 4 cut(s) 79, 271, 607, 862
Tru1I TTAA 2 cut(s) 246, 996
Tru9I TTAA 2 cut(s) 246, 996
TseFI GTSAC 5 cut(s) 251, 458, 575, 883, 1085
TseI GCWGC 6 cut(s) 416, 419, 731, 761, 764, 962
Tsp45I GTSAC 5 cut(s) 251, 458, 575, 883, 1085
TspGWI ACGGA 5 cut(s) 136, 318, 563, 713, 944
TspMI CCCGGG 2 cut(s) 637, 874
VneI GTGCAC 1 cut(s) 1164
VpaK11BI GGWCC 3 cut(s) 613, 931, 1248
XceI RCATGY 2 cut(s) 731, 1126
XmaI CCCGGG 2 cut(s) 637, 874
XmiI GTMKAC 1 cut(s) 373
XmnI GAANNNNTTC 1 cut(s) 1112
XspI CTAG 6 cut(s) 54, 189, 369, 689, 948, 984
ZraI GACGTC 3 cut(s) 51, 715, 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.