Rmu_sc0011582.1_g000002

Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011582.1
Physical Location & Seq
Forward (+)
13594 .. 14868
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011582.1_g000002.1.cds

Sequence Viewer

Length: 1275 bp
atgcaggctcttttaccacccaattatctcctcaagccctacattcccctcccgtctcgggtcgggccgacccgcctcaccgtccaatgcgcctaccgctccgactccctcaacttccacagctccgtcggctccacccgatccgactggcagagctcctgcgccattctcgccagcaaggtcgtctcctcccaggagcagcccgctgaaaaatccggaagcgccgaccacgtcgccgcggtcaacggccacaagacctccgttgacctcgacctcgtccccatcgagaagctctcctccaccgccgacgacaagccggcctcccctcccgccaaggccctcaccatcgccgacctctccccggcgcccatgcacggcgcccagctgcgcgtggcttaccagggcgttcccggcgcctactccgaggccgccgccggtaaggcctaccccaactgcgaggccattccctgcgatcaattcgaagtcgctttccaggccgtggagctctggatcgccgaccgggccgttttgccgattgaaaactccctcggcggctcaatccaccggaactacgatcttctcctccgccaccgcctccacatcgtcggcgaggtccagttacccgtccaccactgcctgttagcactcccgggggtccgaaaagactacttgacccgagtcatctcccacccgcaggccctggcccagtgcgagctcactctcaccaagctcggcctcaacgtcgcacgcgaggcagtcgacgacacggccggcgccgcggagttcatcgccgccaacaacctccgcgacacggccgcaatcgccagcgcacgcgccgccgatctgtacgggctgaacatcctcgccgacgggatccaggacgactcgagcaacgtgacccggttcgtgatgctggcccgggagccgataattccccggacggaccggccgttcaagacgagcatagtcttcgcgcacgacaaggggacgtcggtgctgttcaaggtgctatcggcgttcgcgttcaggaacataagcttgacgaagatcgagtcgcggccgcaccggaaccgtcctatcagactggtgaacgactcgaacgaagggacggcgaagcacttcgagtacttgttctacgtggacttcgaggcctccatggcggaggttagggcacagaatgcgttggcggaggtccaggagttcacgtctttcttgagggtccttggaagctaccctatggatatgaccccctggagcccttcgcggggtgactag

Protein Analysis

424

Amino Acids

46.21

Weight (kDa)

6.36

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 992
AccB1I GGYRCC 4 cut(s) 364, 377, 413, 773
AccB7I CCANNNNNTGG 1 cut(s) 499
AccBSI CCGCTC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 759
AccIII TCCGGA 1 cut(s) 215
AclWI GGATC 4 cut(s) 135, 518, 868, 881
AcoI YGGCCR 5 cut(s) 247, 768, 813, 947, 1058
AcyI GRCGYC 5 cut(s) 365, 378, 414, 774, 989
AfaI GTAC 2 cut(s) 848, 1127
AfiI CCNNNNNNNGG 8 cut(s) 58, 361, 374, 499, 694, 811, 1264, 1265
AgsI TTSAA 3 cut(s) 539, 955, 1003
AjiI CACGTC 2 cut(s) 232, 1206
AjnI CCWGG 7 cut(s) 192, 399, 492, 699, 876, 1194, 1250
AloI GAACNNNNNNTCC 2 cut(s) 935, 967
AluBI AGCT 9 cut(s) 123, 156, 292, 385, 505, 715, 730, 1038, 1230
AluI AGCT 9 cut(s) 123, 156, 292, 385, 505, 715, 730, 1038, 1230
Alw21I GWGCWC 3 cut(s) 158, 507, 717
Alw26I GTCTC 2 cut(s) 60, 190
AlwI GGATC 4 cut(s) 135, 518, 868, 881
AlwNI CAGNNNCTG 1 cut(s) 700
Ama87I CYCGRG 5 cut(s) 57, 649, 675, 886, 918
Aor13HI TCCGGA 1 cut(s) 215
ApeKI GCWGC 2 cut(s) 199, 385
ArsI GACNNNNNNTTYG 2 cut(s) 1037, 1069
Asp700I GAANNNNTTC 1 cut(s) 1118
AsuC2I CCSGG 9 cut(s) 362, 411, 521, 650, 651, 901, 919, 920, 937
AsuHPI GGTGA 4 cut(s) 70, 334, 715, 1099
AsuII TTCGAA 1 cut(s) 480
AvaI CYCGRG 5 cut(s) 57, 649, 675, 886, 918
AvaII GGWCC 5 cut(s) 613, 655, 943, 1192, 1219
BaeGI GKGCMC 1 cut(s) 1174
BamHI GGATCC 1 cut(s) 873
BanI GGYRCC 4 cut(s) 364, 377, 413, 773
BanII GRGCYC 4 cut(s) 158, 507, 717, 1259
BbsI GAAGAC 1 cut(s) 961
Bbv12I GWGCWC 3 cut(s) 158, 507, 717
BbvI GCAGC 2 cut(s) 211, 372
BccI CCATC 2 cut(s) 290, 353
BceAI ACGGC 8 cut(s) 262, 391, 482, 509, 783, 828, 934, 1125
BcgI CGANNNNNNTGC 2 cut(s) 952, 986
BciT130I CCWGG 7 cut(s) 194, 401, 494, 701, 878, 1196, 1252
BcnI CCSGG 9 cut(s) 362, 411, 521, 650, 651, 901, 919, 920, 937
BcoDI GTCTC 2 cut(s) 60, 190
BfaI CTAG 1 cut(s) 1273
BfoI RGCGCY 5 cut(s) 225, 368, 381, 417, 777
BglI GCCNNNNNGGC 3 cut(s) 440, 521, 1157
BmcAI AGTACT 1 cut(s) 1127
Bme18I GGWCC 5 cut(s) 613, 655, 943, 1192, 1219
BmeT110I CYCGRG 5 cut(s) 57, 649, 675, 886, 918
BmgBI CACGTC 2 cut(s) 232, 1206
BmrI ACTGGG 1 cut(s) 700
BmsI GCATC 1 cut(s) 900
BmuI ACTGGG 1 cut(s) 700
BoxI GACNNNNGTC 1 cut(s) 677
BpiI GAAGAC 1 cut(s) 961
BplI GAGNNNNNCTC 2 cut(s) 278, 310
BpmI CTGGAG 1 cut(s) 1273
Bpu14I TTCGAA 1 cut(s) 480
BpuEI CTTGAG 2 cut(s) 17, 1234
BpuMI CCSGG 9 cut(s) 362, 411, 521, 650, 651, 901, 919, 920, 937
BsaAI YACGTR 1 cut(s) 1138
BsaHI GRCGYC 5 cut(s) 365, 378, 414, 774, 989
BsaWI WCCGGW 3 cut(s) 215, 564, 1065
BsaXI ACNNNNNCTCC 4 cut(s) 242, 272, 1190, 1220
Bsc4I CCNNNNNNNGG 8 cut(s) 58, 361, 374, 499, 694, 811, 1264, 1265
Bse118I RCCGGY 4 cut(s) 316, 434, 770, 945
Bse1I ACTGG 4 cut(s) 152, 616, 706, 1089
BseAI TCCGGA 1 cut(s) 215
BseBI CCWGG 7 cut(s) 194, 401, 494, 701, 878, 1196, 1252
BseGI GGATG 1 cut(s) 858
BseLI CCNNNNNNNGG 8 cut(s) 58, 361, 374, 499, 694, 811, 1264, 1265
BseNI ACTGG 4 cut(s) 152, 616, 706, 1089
BseRI GAGGAG 4 cut(s) 20, 178, 286, 572
BseSI GKGCMC 1 cut(s) 1174
BseX3I CGGCCG 4 cut(s) 768, 813, 947, 1058
BseXI GCAGC 2 cut(s) 211, 372
BseYI CCCAGC 1 cut(s) 381
Bsh1285I CGRYCG 5 cut(s) 520, 771, 816, 950, 1061
BshNI GGYRCC 4 cut(s) 364, 377, 413, 773
BsiEI CGRYCG 5 cut(s) 520, 771, 816, 950, 1061
BsiHKAI GWGCWC 3 cut(s) 158, 507, 717
BsiHKCI CYCGRG 5 cut(s) 57, 649, 675, 886, 918
BslFI GGGAC 3 cut(s) 263, 1000, 1120
BslI CCNNNNNNNGG 8 cut(s) 58, 361, 374, 499, 694, 811, 1264, 1265
BsmAI GTCTC 2 cut(s) 60, 190
BsmBI CGTCTC 2 cut(s) 60, 190
BsmFI GGGAC 3 cut(s) 263, 1000, 1120
BsmI GAATGC 1 cut(s) 1183
BsoBI CYCGRG 5 cut(s) 57, 649, 675, 886, 918
Bsp119I TTCGAA 1 cut(s) 480
Bsp1286I GDGCHC 5 cut(s) 158, 507, 717, 1174, 1259
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 7 cut(s) 140, 472, 510, 574, 841, 873, 1047
Bsp19I CCATGG 1 cut(s) 1155
BspEI TCCGGA 1 cut(s) 215
BspPI GGATC 4 cut(s) 135, 518, 868, 881
BspT104I TTCGAA 1 cut(s) 480
BspT107I GGYRCC 4 cut(s) 364, 377, 413, 773
BsrBI CCGCTC 1 cut(s) 99
BsrFI RCCGGY 4 cut(s) 316, 434, 770, 945
BsrI ACTGG 4 cut(s) 152, 616, 706, 1089
BssAI RCCGGY 4 cut(s) 316, 434, 770, 945
BssMI GATC 7 cut(s) 140, 472, 510, 574, 841, 873, 1047
BssNI GRCGYC 5 cut(s) 365, 378, 414, 774, 989
BssT1I CCWWGG 3 cut(s) 333, 1155, 1222
Bst2UI CCWGG 7 cut(s) 194, 401, 494, 701, 878, 1196, 1252
Bst4CI ACNGT 2 cut(s) 82, 1073
BstACI GRCGYC 5 cut(s) 365, 378, 414, 774, 989
BstAPI GCANNNNNTGC 1 cut(s) 1178
BstBAI YACGTR 1 cut(s) 1138
BstBI TTCGAA 1 cut(s) 480
BstDSI CCRYGG 4 cut(s) 237, 498, 777, 1155
BstF5I GGATG 1 cut(s) 858
BstH2I RGCGCY 5 cut(s) 225, 368, 381, 417, 777
BstKTI GATC 7 cut(s) 143, 475, 513, 577, 844, 876, 1050
BstMAI GTCTC 2 cut(s) 60, 190
BstMBI GATC 7 cut(s) 140, 472, 510, 574, 841, 873, 1047
BstMCI CGRYCG 5 cut(s) 520, 771, 816, 950, 1061
BstNI CCWGG 7 cut(s) 194, 401, 494, 701, 878, 1196, 1252
BstPAI GACNNNNGTC 1 cut(s) 677
BstSLI GKGCMC 1 cut(s) 1174
BstV1I GCAGC 2 cut(s) 211, 372
BstV2I GAAGAC 1 cut(s) 961
BstX2I RGATCY 1 cut(s) 873
BstYI RGATCY 1 cut(s) 873
BstZI CGGCCG 4 cut(s) 768, 813, 947, 1058
BtgI CCRYGG 4 cut(s) 237, 498, 777, 1155
BtgZI GCGATG 2 cut(s) 331, 772
BtrI CACGTC 2 cut(s) 232, 1206
BtsCI GGATG 1 cut(s) 858
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 2 cut(s) 631, 713
CaiI CAGNNNCTG 1 cut(s) 700
CciNI GCGGCCGC 1 cut(s) 1058
Cfr10I RCCGGY 4 cut(s) 316, 434, 770, 945
Cfr42I CCGCGG 2 cut(s) 240, 780
Cfr9I CCCGGG 2 cut(s) 649, 918
CpoI CGGWCCG 1 cut(s) 943
Csp6I GTAC 2 cut(s) 847, 1126
CspI CGGWCCG 1 cut(s) 943
CviAII CATG 2 cut(s) 370, 1156
CviQI GTAC 2 cut(s) 847, 1126
DinI GGCGCC 4 cut(s) 366, 379, 415, 775
DpnI GATC 7 cut(s) 142, 474, 512, 576, 843, 875, 1049
DpnII GATC 7 cut(s) 140, 472, 510, 574, 841, 873, 1047
EaeI YGGCCR 5 cut(s) 247, 768, 813, 947, 1058
EagI CGGCCG 4 cut(s) 768, 813, 947, 1058
EciI GGCGGA 3 cut(s) 575, 1175, 1202
Ecl136II GAGCTC 3 cut(s) 156, 505, 715
EclXI CGGCCG 4 cut(s) 768, 813, 947, 1058
Eco130I CCWWGG 3 cut(s) 333, 1155, 1222
Eco147I AGGCCT 2 cut(s) 443, 1151
Eco24I GRGCYC 4 cut(s) 158, 507, 717, 1259
Eco47I GGWCC 5 cut(s) 613, 655, 943, 1192, 1219
Eco52I CGGCCG 4 cut(s) 768, 813, 947, 1058
Eco53kI GAGCTC 3 cut(s) 156, 505, 715
Eco88I CYCGRG 5 cut(s) 57, 649, 675, 886, 918
EcoICRI GAGCTC 3 cut(s) 156, 505, 715
EcoO109I RGGNCCY 3 cut(s) 337, 697, 1219
EcoRII CCWGG 7 cut(s) 192, 399, 492, 699, 876, 1194, 1250
EcoT14I CCWWGG 3 cut(s) 333, 1155, 1222
EcoT38I GRGCYC 4 cut(s) 158, 507, 717, 1259
EgeI GGCGCC 4 cut(s) 366, 379, 415, 775
EheI GGCGCC 4 cut(s) 366, 379, 415, 775
ErhI CCWWGG 3 cut(s) 333, 1155, 1222
Esp3I CGTCTC 2 cut(s) 60, 190
FaeI CATG 2 cut(s) 373, 1159
FaiI YATR 6 cut(s) 371, 965, 1034, 1157, 1238, 1244
FaqI GGGAC 3 cut(s) 263, 1000, 1120
FatI CATG 2 cut(s) 369, 1155
FauI CCCGC 5 cut(s) 80, 211, 337, 699, 1257
FblI GTMKAC 1 cut(s) 759
FokI GGATG 1 cut(s) 845
FriOI GRGCYC 4 cut(s) 158, 507, 717, 1259
FspBI CTAG 1 cut(s) 1273
GsaI CCCAGC 1 cut(s) 385
GsuI CTGGAG 1 cut(s) 1273
HaeII RGCGCY 5 cut(s) 225, 368, 381, 417, 777
Hin1I GRCGYC 5 cut(s) 365, 378, 414, 774, 989
Hin1II CATG 2 cut(s) 373, 1159
HincII GTYRAC 3 cut(s) 244, 265, 760
HindII GTYRAC 3 cut(s) 244, 265, 760
HindIII AAGCTT 1 cut(s) 1036
HinfI GANTC 5 cut(s) 104, 678, 884, 1052, 1094
HphI GGTGA 4 cut(s) 70, 334, 715, 1099
Hpy166II GTNNAC 7 cut(s) 244, 265, 628, 760, 1090, 1141, 1203
Hpy188I TCNGA 5 cut(s) 103, 145, 424, 659, 1082
Hpy188III TCNNGA 7 cut(s) 216, 286, 508, 907, 955, 1027, 1213
Hpy8I GTNNAC 7 cut(s) 244, 265, 628, 760, 1090, 1141, 1203
Hpy99I CGWCG 8 cut(s) 131, 236, 311, 608, 746, 764, 872, 994
HpyAV CCTTC 2 cut(s) 1097, 1269
HpyCH4III ACNGT 2 cut(s) 82, 1073
HpyCH4IV ACGT 6 cut(s) 231, 741, 894, 989, 1137, 1205
HpyCH4V TGCA 2 cut(s) 4, 373
HpySE526I ACGT 6 cut(s) 231, 741, 894, 989, 1137, 1205
Hsp92I GRCGYC 5 cut(s) 365, 378, 414, 774, 989
Hsp92II CATG 2 cut(s) 373, 1159
KasI GGCGCC 4 cut(s) 364, 377, 413, 773
Kpn2I TCCGGA 1 cut(s) 215
KroI GCCGGC 2 cut(s) 316, 770
KroNI GCCGGC 2 cut(s) 318, 772
KspI CCGCGG 2 cut(s) 240, 780
Kzo9I GATC 7 cut(s) 140, 472, 510, 574, 841, 873, 1047
LmnI GCTCC 8 cut(s) 104, 128, 137, 161, 196, 502, 922, 1254
Lsp1109I GCAGC 2 cut(s) 211, 372
LweI GCATC 1 cut(s) 900
MaeI CTAG 1 cut(s) 1273
MaeII ACGT 6 cut(s) 231, 741, 894, 989, 1137, 1205
MaeIII GTNAC 3 cut(s) 618, 895, 1268
MalI GATC 7 cut(s) 142, 474, 512, 576, 843, 875, 1049
MbiI CCGCTC 1 cut(s) 99
MboI GATC 7 cut(s) 140, 472, 510, 574, 841, 873, 1047
MboII GAAGA 3 cut(s) 569, 961, 1057
MflI RGATCY 1 cut(s) 873
MhlI GDGCHC 5 cut(s) 158, 507, 717, 1174, 1259
MluCI AATT 3 cut(s) 22, 476, 930
Mly113I GGCGCC 4 cut(s) 365, 378, 414, 774
MlyI GAGTC 5 cut(s) 98, 687, 878, 1061, 1088
MmeI TCCRAC 2 cut(s) 126, 168
MroI TCCGGA 1 cut(s) 215
MroNI GCCGGC 2 cut(s) 316, 770
MroXI GAANNNNTTC 1 cut(s) 1118
MspA1I CMGCKG 4 cut(s) 206, 239, 385, 779
Mva1269I GAATGC 1 cut(s) 1183
MvaI CCWGG 7 cut(s) 194, 401, 494, 701, 878, 1196, 1252
NaeI GCCGGC 2 cut(s) 318, 772
NarI GGCGCC 4 cut(s) 365, 378, 414, 774
NciI CCSGG 9 cut(s) 362, 411, 521, 650, 651, 901, 919, 920, 937
NcoI CCATGG 1 cut(s) 1155
NdeII GATC 7 cut(s) 140, 472, 510, 574, 841, 873, 1047
NgoMIV GCCGGC 2 cut(s) 316, 770
NlaIII CATG 2 cut(s) 373, 1159
NmeAIII GCCGAG 2 cut(s) 528, 711
NmuCI GTSAC 2 cut(s) 895, 1268
NotI GCGGCCGC 1 cut(s) 1058
NspV TTCGAA 1 cut(s) 480
PaeR7I CTCGAG 1 cut(s) 886
PceI AGGCCT 2 cut(s) 443, 1151
PcsI WCGNNNNNNNCGW 7 cut(s) 282, 738, 747, 947, 1019, 1098, 1143
PctI GAATGC 1 cut(s) 1183
PdiI GCCGGC 2 cut(s) 318, 772
PdmI GAANNNNTTC 1 cut(s) 1118
PflFI GACNNNGTC 2 cut(s) 230, 275
PflMI CCANNNNNTGG 1 cut(s) 499
PfoI TCCNGGA 2 cut(s) 876, 1194
PleI GAGTC 5 cut(s) 98, 686, 878, 1060, 1088
PluTI GGCGCC 4 cut(s) 368, 381, 417, 777
PpsI GAGTC 5 cut(s) 98, 686, 878, 1060, 1088
Ppu21I YACGTR 1 cut(s) 1138
PpuMI RGGWCCY 1 cut(s) 1219
PshAI GACNNNNGTC 1 cut(s) 677
Psp124BI GAGCTC 3 cut(s) 158, 507, 717
Psp5II RGGWCCY 1 cut(s) 1219
Psp6I CCWGG 7 cut(s) 192, 399, 492, 699, 876, 1194, 1250
PspFI CCCAGC 1 cut(s) 381
PspGI CCWGG 7 cut(s) 192, 399, 492, 699, 876, 1194, 1250
PspPPI RGGWCCY 1 cut(s) 1219
PspXI VCTCGAGB 1 cut(s) 886
PstNI CAGNNNCTG 1 cut(s) 700
PsuI RGATCY 1 cut(s) 873
PsyI GACNNNGTC 2 cut(s) 230, 275
PvuII CAGCTG 1 cut(s) 385
RsaI GTAC 2 cut(s) 848, 1127
RsaNI GTAC 2 cut(s) 847, 1126
Rsr2I CGGWCCG 1 cut(s) 943
RsrII CGGWCCG 1 cut(s) 943
SacI GAGCTC 3 cut(s) 158, 507, 717
SacII CCGCGG 2 cut(s) 240, 780
SalI GTCGAC 1 cut(s) 758
Sau3AI GATC 7 cut(s) 140, 472, 510, 574, 841, 873, 1047
ScaI AGTACT 1 cut(s) 1127
SchI GAGTC 5 cut(s) 98, 687, 878, 1061, 1088
SduI GDGCHC 5 cut(s) 158, 507, 717, 1174, 1259
SfaNI GCATC 1 cut(s) 900
SfoI GGCGCC 4 cut(s) 366, 379, 415, 775
Sfr274I CTCGAG 1 cut(s) 886
Sfr303I CCGCGG 2 cut(s) 240, 780
SfuI TTCGAA 1 cut(s) 480
SgrBI CCGCGG 2 cut(s) 240, 780
SinI GGWCC 5 cut(s) 613, 655, 943, 1192, 1219
SlaI CTCGAG 1 cut(s) 886
SmaI CCCGGG 2 cut(s) 651, 920
SmlI CTYRAG 3 cut(s) 32, 886, 1213
SmoI CTYRAG 3 cut(s) 32, 886, 1213
Sse9I AATT 3 cut(s) 22, 476, 930
SseBI AGGCCT 2 cut(s) 443, 1151
SspDI GGCGCC 4 cut(s) 364, 377, 413, 773
SspMI CTAG 1 cut(s) 1273
SstI GAGCTC 3 cut(s) 158, 507, 717
StuI AGGCCT 2 cut(s) 443, 1151
StyI CCWWGG 3 cut(s) 333, 1155, 1222
TaaI ACNGT 2 cut(s) 82, 1073
TaiI ACGT 6 cut(s) 234, 744, 897, 992, 1140, 1208
TaqI TCGA 9 cut(s) 270, 285, 480, 759, 887, 1050, 1097, 1122, 1146
TasI AATT 3 cut(s) 22, 476, 930
TatI WGTACW 1 cut(s) 1125
TscAI CASTG 2 cut(s) 638, 713
TseFI GTSAC 2 cut(s) 895, 1268
TseI GCWGC 2 cut(s) 199, 385
Tsp45I GTSAC 2 cut(s) 895, 1268
TspDTI ATGAA 1 cut(s) 775
TspGWI ACGGA 3 cut(s) 115, 250, 956
TspMI CCCGGG 2 cut(s) 649, 918
TspRI CASTG 2 cut(s) 638, 713
Tth111I GACNNNGTC 2 cut(s) 230, 275
Van91I CCANNNNNTGG 1 cut(s) 499
VpaK11BI GGWCC 5 cut(s) 613, 655, 943, 1192, 1219
XhoI CTCGAG 1 cut(s) 886
XmaI CCCGGG 2 cut(s) 649, 918
XmiI GTMKAC 1 cut(s) 759
XmnI GAANNNNTTC 1 cut(s) 1118
XspI CTAG 1 cut(s) 1273
ZraI GACGTC 1 cut(s) 990
ZrmI AGTACT 1 cut(s) 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.