AT5G22630

Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
7524086 .. 7526270
2185 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22630.1

Sequence Viewer

Length: 1278 bp
ATGCAAACCATTTCGCCTGCGTTCTCGTGCGATCTCAAATCCGTAATTCAACCGAATCTAACGGCTAAGAAAGCGCGTTACTCTCACGTAAATGGAAAGCGCGTGTCTGTTCGTTGCAGTTACAGGTCTGAGTCGTTTAGCTTCCCTAACGGTGTTGGCTCAAGCCGAGCCGATTGGCAAAGCTCATGCGCCATCTTAGCCAGTAAAGTAGTTTCGGCTGAGAATTCAAGCTCCGTCGCCGTCGTTAACGGACACAGTAACGGCTCCGTTGATTTAAGCCTTGTTCCGTCAAAGTCGCAGCACAACGGAAAGCCTGGATTGATTCAGCCGTTAACGATAACAGATCTATCTCCCGCGCCGTCTCATGGATCTACTCTTCGTGTCGCGTATCAAGGAGTTCCGGGAGCGTACTCCGAAGCGGCCGCCGGAAAAGCTTACCCAAACTCCGAAGCTATTCCTTGTGATCAATTCGACGTTGCGTTTCAGGCGGTGGAGCTTTGGATCGCCGATCGTGCTGTTCTCCCAGTTGAGAACTCTCTCGGTGGTTCGATTCATAGAAATTACGATCTTCTCCTCCGTCACCGTCTCCACATCGTCGGAGAAGTTCAGATCCCGGTTCACCACTGTCTCTTAGCTCTTCCCGGAGTTCGTACGGATTGCATCACGCGAGTGATTTCGCATCCTCAAGCTCTGGCTCAGACGGAAGGATCGCTCAACAAACTCACTCCAAAAGCAGCGATTGAAGCGTTTCACGACACAGCCGCGGCGGCGGAATACATCGCTGCTAACAACCTCCACGACACGGCGGCGGTAGCGAGCGCAAGAGCAGCTGAGCTCTACGGACTTCAGATTCTCGCCGACGGGATCCAAGACGACGCAGGAAACGTCACGCGCTTCCTTATGTTGGCGCGTGATCCGATCATTCCCCGTACCGATCGTCCGTTTAAAACGAGTATCGTTTTCGCAGCTCAAGAACATAAAGGAACTAGCGTTTTATTCAAAGTGCTTTCCGCGTTTGCGTTTCGAAACATTAGTTTGACGAAAATCGAATCGCGGCCGCATCAGAATTGTCCCGTTAGAGTCGTAGGCGACGAAAACGTTGGAACATCGAAGCACTTTGAGTACACATTCTACGTCGACTTCGAAGCGTCGATGGCGGAGGCGCGTGCACAAAACGCGTTAGCGGAGGTGCAAGAGTACACGTCATTCCTCAGGGTGCTGGGAAGTTACCCAATGGATATGACGCCATGGTCCACGTTACCTAGCGAAGACGTATGA

Protein Analysis

425

Amino Acids

45.93

Weight (kDa)

6.57

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDT PF00800 128 - 305 1.6e-59 Prephenate dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1249
AccI GTMKAC 1 cut(s) 1137
AclI AACGTT 1 cut(s) 1098
AclWI GGATC 7 cut(s) 376, 509, 604, 715, 859, 872, 908
AcoI YGGCCR 2 cut(s) 420, 1055
AcsI RAATTY 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 830
AcyI GRCGYC 1 cut(s) 1244
AfaI GTAC 5 cut(s) 410, 652, 931, 1124, 1199
AfiI CCNNNNNNNGG 3 cut(s) 365, 802, 904
AflIII ACRYGT 2 cut(s) 1176, 1200
AgsI TTSAA 4 cut(s) 50, 228, 743, 1000
AjiI CACGTC 1 cut(s) 1203
AjnI CCWGG 1 cut(s) 313
AleI CACNNNNGTG 1 cut(s) 668
Alw21I GWGCWC 2 cut(s) 837, 1171
Alw26I GTCTC 3 cut(s) 366, 590, 632
Alw44I GTGCAC 1 cut(s) 1167
AlwI GGATC 7 cut(s) 376, 509, 604, 715, 859, 872, 908
AoxI GGCC 2 cut(s) 420, 1055
ApaLI GTGCAC 1 cut(s) 1167
ApeKI GCWGC 5 cut(s) 298, 734, 782, 827, 965
ApoI RAATTY 1 cut(s) 223
Asp700I GAANNNNTTC 2 cut(s) 453, 747
AspLEI GCGC 8 cut(s) 76, 102, 191, 358, 821, 894, 910, 1165
AspS9I GGNCC 1 cut(s) 1251
AsuC2I CCSGG 3 cut(s) 402, 614, 642
AsuHPI GGTGA 2 cut(s) 572, 611
AsuII TTCGAA 2 cut(s) 1024, 1143
AvaII GGWCC 1 cut(s) 1251
AxyI CCTNAGG 1 cut(s) 1211
BaeGI GKGCMC 1 cut(s) 1171
BamHI GGATCC 1 cut(s) 864
BanII GRGCYC 1 cut(s) 837
BauI CACGAG 1 cut(s) 25
Bbv12I GWGCWC 2 cut(s) 837, 1171
BbvI GCAGC 5 cut(s) 310, 746, 769, 839, 977
BccI CCATC 2 cut(s) 200, 1147
BceAI ACGGC 6 cut(s) 78, 224, 277, 313, 343, 819
BciT130I CCWGG 1 cut(s) 315
BclI TGATCA 1 cut(s) 463
BcnI CCSGG 3 cut(s) 402, 614, 642
BcoDI GTCTC 3 cut(s) 366, 590, 632
BfaI CTAG 2 cut(s) 987, 1263
BglI GCCNNNNNGGC 1 cut(s) 767
BglII AGATCT 1 cut(s) 343
BlpI GCTNAGC 1 cut(s) 831
Bme1390I CCNGG 4 cut(s) 315, 402, 614, 642
Bme18I GGWCC 1 cut(s) 1251
BmgBI CACGTC 1 cut(s) 1203
BmgT120I GGNCC 1 cut(s) 1251
BmiI GGNNCC 2 cut(s) 265, 866
BmrFI CCNGG 4 cut(s) 315, 402, 614, 642
BmrI ACTGGG 1 cut(s) 518
BmsI GCATC 3 cut(s) 669, 688, 1069
BmuI ACTGGG 1 cut(s) 518
Bpu1102I GCTNAGC 1 cut(s) 831
Bpu14I TTCGAA 2 cut(s) 1024, 1143
BpuEI CTTGAG 3 cut(s) 145, 669, 954
BpuMI CCSGG 3 cut(s) 402, 614, 642
BsaAI YACGTR 1 cut(s) 88
BsaHI GRCGYC 1 cut(s) 1244
BsaJI CCNNGG 2 cut(s) 762, 1247
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 3 cut(s) 365, 802, 904
Bse1I ACTGG 2 cut(s) 201, 524
Bse21I CCTNAGG 1 cut(s) 1211
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 762, 1247
BseGI GGATG 1 cut(s) 679
BseLI CCNNNNNNNGG 3 cut(s) 365, 802, 904
BseMII CTCAG 5 cut(s) 120, 210, 710, 822, 1225
BseNI ACTGG 2 cut(s) 201, 524
BseRI GAGGAG 1 cut(s) 563
BseSI GKGCMC 1 cut(s) 1171
BseX3I CGGCCG 2 cut(s) 420, 1055
BseXI GCAGC 5 cut(s) 310, 746, 769, 839, 977
BseYI CCCAGC 1 cut(s) 1219
Bsh1285I CGRYCG 4 cut(s) 423, 511, 937, 1058
BshFI GGCC 2 cut(s) 422, 1057
BsiEI CGRYCG 4 cut(s) 423, 511, 937, 1058
BsiHKAI GWGCWC 2 cut(s) 837, 1171
BsiSI CCGG 4 cut(s) 401, 426, 614, 642
BsiWI CGTACG 1 cut(s) 650
BslFI GGGAC 1 cut(s) 1056
BslI CCNNNNNNNGG 3 cut(s) 365, 802, 904
BsmAI GTCTC 3 cut(s) 366, 590, 632
BsmBI CGTCTC 2 cut(s) 366, 590
BsmFI GGGAC 1 cut(s) 1056
BsnI GGCC 2 cut(s) 422, 1057
Bsp119I TTCGAA 2 cut(s) 1024, 1143
Bsp1286I GDGCHC 2 cut(s) 837, 1171
Bsp1720I GCTNAGC 1 cut(s) 831
Bsp19I CCATGG 1 cut(s) 1247
BspANI GGCC 2 cut(s) 422, 1057
BspCNI CTCAG 5 cut(s) 121, 211, 709, 823, 1224
BspLI GGNNCC 2 cut(s) 265, 866
BspPI GGATC 7 cut(s) 376, 509, 604, 715, 859, 872, 908
BspQI GCTCTTC 1 cut(s) 642
BspT104I TTCGAA 2 cut(s) 1024, 1143
BsrI ACTGG 2 cut(s) 201, 524
BssECI CCNNGG 2 cut(s) 762, 1247
BssNI GRCGYC 1 cut(s) 1244
BssSI CACGAG 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 1247
Bst2BI CACGAG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 4 cut(s) 152, 257, 584, 626
Bst6I CTCTTC 2 cut(s) 381, 642
BstACI GRCGYC 1 cut(s) 1244
BstBAI YACGTR 1 cut(s) 88
BstBI TTCGAA 2 cut(s) 1024, 1143
BstC8I GCNNGC 3 cut(s) 18, 817, 1167
BstDEI CTNAG 8 cut(s) 66, 129, 196, 219, 631, 696, 831, 1211
BstDSI CCRYGG 2 cut(s) 762, 1247
BstF5I GGATG 1 cut(s) 679
BstHHI GCGC 8 cut(s) 76, 102, 191, 358, 821, 894, 910, 1165
BstMAI GTCTC 3 cut(s) 366, 590, 632
BstMCI CGRYCG 4 cut(s) 423, 511, 937, 1058
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 4 cut(s) 313, 400, 612, 640
BstSLI GKGCMC 1 cut(s) 1171
BstV1I GCAGC 5 cut(s) 310, 746, 769, 839, 977
BstX2I RGATCY 4 cut(s) 343, 368, 609, 864
BstYI RGATCY 4 cut(s) 343, 368, 609, 864
BstZI CGGCCG 2 cut(s) 420, 1055
Bsu36I CCTNAGG 1 cut(s) 1211
BsuRI GGCC 2 cut(s) 422, 1057
BtgI CCRYGG 2 cut(s) 762, 1247
BtgZI GCGATG 1 cut(s) 763
BtrI CACGTC 1 cut(s) 1203
BtsCI GGATG 1 cut(s) 679
BtsIMutI CAGTG 1 cut(s) 622
Cac8I GCNNGC 3 cut(s) 18, 817, 1167
CciNI GCGGCCGC 2 cut(s) 420, 1055
CfoI GCGC 8 cut(s) 76, 102, 191, 358, 821, 894, 910, 1165
Cfr13I GGNCC 1 cut(s) 1251
Cfr42I CCGCGG 1 cut(s) 765
CseI GACGC 3 cut(s) 884, 1137, 1252
Csp6I GTAC 5 cut(s) 409, 651, 930, 1123, 1198
CviAII CATG 3 cut(s) 186, 365, 1248
CviQI GTAC 5 cut(s) 409, 651, 930, 1123, 1198
DdeI CTNAG 8 cut(s) 66, 129, 196, 219, 631, 696, 831, 1211
DraI TTTAAA 1 cut(s) 946
DrdI GACNNNNNNGTC 1 cut(s) 1249
DseDI GACNNNNNNGTC 1 cut(s) 1249
EaeI YGGCCR 2 cut(s) 420, 1055
EagI CGGCCG 2 cut(s) 420, 1055
Eam1104I CTCTTC 2 cut(s) 381, 642
EarI CTCTTC 2 cut(s) 381, 642
EciI GGCGGA 2 cut(s) 785, 1172
Ecl136II GAGCTC 1 cut(s) 835
EclXI CGGCCG 2 cut(s) 420, 1055
Eco130I CCWWGG 1 cut(s) 1247
Eco24I GRGCYC 1 cut(s) 837
Eco47I GGWCC 1 cut(s) 1251
Eco52I CGGCCG 2 cut(s) 420, 1055
Eco53kI GAGCTC 1 cut(s) 835
Eco57I CTGAAG 1 cut(s) 830
Eco81I CCTNAGG 1 cut(s) 1211
EcoICRI GAGCTC 1 cut(s) 835
EcoRI GAATTC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 1247
EcoT38I GRGCYC 1 cut(s) 837
ErhI CCWWGG 1 cut(s) 1247
Esp3I CGTCTC 2 cut(s) 366, 590
FaeI CATG 3 cut(s) 189, 368, 1251
FaiI YATR 8 cut(s) 187, 366, 555, 902, 978, 1241, 1249, 1276
FaqI GGGAC 1 cut(s) 1056
FatI CATG 3 cut(s) 185, 364, 1247
FauI CCCGC 1 cut(s) 361
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 1137
FokI GGATG 1 cut(s) 666
FriOI GRGCYC 1 cut(s) 837
FspBI CTAG 2 cut(s) 987, 1263
GlaI GCGC 8 cut(s) 75, 101, 190, 357, 820, 893, 909, 1164
GsaI CCCAGC 1 cut(s) 1223
HaeIII GGCC 2 cut(s) 422, 1057
HapII CCGG 4 cut(s) 401, 426, 614, 642
HgaI GACGC 3 cut(s) 884, 1137, 1252
HhaI GCGC 8 cut(s) 76, 102, 191, 358, 821, 894, 910, 1165
Hin1I GRCGYC 1 cut(s) 1244
Hin1II CATG 3 cut(s) 189, 368, 1251
Hin6I GCGC 8 cut(s) 74, 100, 189, 356, 819, 892, 908, 1163
HinP1I GCGC 8 cut(s) 74, 100, 189, 356, 819, 892, 908, 1163
HincII GTYRAC 3 cut(s) 247, 333, 1138
HindII GTYRAC 3 cut(s) 247, 333, 1138
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 7 cut(s) 55, 131, 322, 550, 850, 1049, 1080
HpaI GTTAAC 2 cut(s) 247, 333
HpaII CCGG 4 cut(s) 401, 426, 614, 642
HphI GGTGA 2 cut(s) 572, 611
Hpy166II GTNNAC 8 cut(s) 247, 333, 619, 1125, 1138, 1169, 1200, 1254
Hpy188I TCNGA 9 cut(s) 130, 415, 448, 599, 609, 699, 849, 918, 1065
Hpy188III TCNNGA 2 cut(s) 752, 971
Hpy8I GTNNAC 8 cut(s) 247, 333, 619, 1125, 1138, 1169, 1200, 1254
Hpy99I CGWCG 9 cut(s) 239, 245, 476, 599, 863, 878, 1094, 1139, 1153
HpyAV CCTTC 1 cut(s) 698
HpyCH4III ACNGT 4 cut(s) 152, 257, 584, 626
HpyCH4IV ACGT 8 cut(s) 87, 474, 885, 1098, 1134, 1202, 1256, 1272
HpyCH4V TGCA 5 cut(s) 4, 117, 660, 1169, 1192
HpyF3I CTNAG 8 cut(s) 66, 129, 196, 219, 631, 696, 831, 1211
HpySE526I ACGT 8 cut(s) 87, 474, 885, 1098, 1134, 1202, 1256, 1272
Hsp92I GRCGYC 1 cut(s) 1244
Hsp92II CATG 3 cut(s) 189, 368, 1251
HspAI GCGC 8 cut(s) 74, 100, 189, 356, 819, 892, 908, 1163
Ksp22I TGATCA 1 cut(s) 463
KspAI GTTAAC 2 cut(s) 247, 333
KspI CCGCGG 1 cut(s) 765
LguI GCTCTTC 1 cut(s) 642
LmnI GCTCC 4 cut(s) 236, 269, 404, 493
Lsp1109I GCAGC 5 cut(s) 310, 746, 769, 839, 977
LweI GCATC 3 cut(s) 669, 688, 1069
MaeI CTAG 2 cut(s) 987, 1263
MaeII ACGT 8 cut(s) 87, 474, 885, 1098, 1134, 1202, 1256, 1272
MaeIII GTNAC 7 cut(s) 77, 119, 257, 578, 886, 1226, 1257
MboII GAAGA 3 cut(s) 368, 560, 629
MflI RGATCY 4 cut(s) 343, 368, 609, 864
MhlI GDGCHC 2 cut(s) 837, 1171
MluCI AATT 5 cut(s) 45, 223, 467, 559, 1066
MluI ACGCGT 1 cut(s) 1176
MlyI GAGTC 2 cut(s) 140, 1089
MmeI TCCRAC 2 cut(s) 577, 1081
MnlI CCTC 6 cut(s) 584, 693, 803, 1153, 1180, 1220
MroXI GAANNNNTTC 2 cut(s) 453, 747
MseI TTAA 4 cut(s) 246, 275, 332, 945
MslI CAYNNNNRTG 2 cut(s) 90, 668
MspA1I CMGCKG 2 cut(s) 764, 830
MspI CCGG 4 cut(s) 401, 426, 614, 642
MspR9I CCNGG 4 cut(s) 315, 402, 614, 642
MvaI CCWGG 1 cut(s) 315
NciI CCSGG 3 cut(s) 402, 614, 642
NcoI CCATGG 1 cut(s) 1247
NlaIII CATG 3 cut(s) 189, 368, 1251
NlaIV GGNNCC 2 cut(s) 265, 866
NmeAIII GCCGAG 1 cut(s) 191
NmuCI GTSAC 2 cut(s) 578, 886
NotI GCGGCCGC 2 cut(s) 420, 1055
NspV TTCGAA 2 cut(s) 1024, 1143
OliI CACNNNNGTG 1 cut(s) 668
PciSI GCTCTTC 1 cut(s) 642
PcsI WCGNNNNNNNCGW 3 cut(s) 882, 1089, 1140
PdmI GAANNNNTTC 2 cut(s) 453, 747
PfeI GAWTC 5 cut(s) 55, 322, 550, 850, 1049
Pfl23II CGTACG 1 cut(s) 650
PfoI TCCNGGA 2 cut(s) 400, 640
Ple19I CGATCG 2 cut(s) 511, 937
PleI GAGTC 2 cut(s) 139, 1088
PpsI GAGTC 2 cut(s) 139, 1088
Ppu21I YACGTR 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 837
Psp1406I AACGTT 1 cut(s) 1098
Psp6I CCWGG 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 1219
PspGI CCWGG 1 cut(s) 313
PspLI CGTACG 1 cut(s) 650
PspN4I GGNNCC 2 cut(s) 265, 866
PspPI GGNCC 1 cut(s) 1251
PsuI RGATCY 4 cut(s) 343, 368, 609, 864
PvuI CGATCG 2 cut(s) 511, 937
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 5 cut(s) 410, 652, 931, 1124, 1199
RsaNI GTAC 5 cut(s) 409, 651, 930, 1123, 1198
RseI CAYNNNNRTG 2 cut(s) 90, 668
SacI GAGCTC 1 cut(s) 837
SacII CCGCGG 1 cut(s) 765
SalI GTCGAC 1 cut(s) 1136
SapI GCTCTTC 1 cut(s) 642
SaqAI TTAA 4 cut(s) 246, 275, 332, 945
Sau96I GGNCC 1 cut(s) 1251
SchI GAGTC 2 cut(s) 140, 1089
ScrFI CCNGG 4 cut(s) 315, 402, 614, 642
SduI GDGCHC 2 cut(s) 837, 1171
SfaNI GCATC 3 cut(s) 669, 688, 1069
Sfr303I CCGCGG 1 cut(s) 765
SfuI TTCGAA 2 cut(s) 1024, 1143
SgrBI CCGCGG 1 cut(s) 765
SinI GGWCC 1 cut(s) 1251
SmiMI CAYNNNNRTG 2 cut(s) 90, 668
SmlI CTYRAG 3 cut(s) 160, 684, 969
SmoI CTYRAG 3 cut(s) 160, 684, 969
Sse9I AATT 5 cut(s) 45, 223, 467, 559, 1066
SspMI CTAG 2 cut(s) 987, 1263
SstI GAGCTC 1 cut(s) 837
StyD4I CCNGG 4 cut(s) 313, 400, 612, 640
StyI CCWWGG 1 cut(s) 1247
TaaI ACNGT 4 cut(s) 152, 257, 584, 626
TaiI ACGT 8 cut(s) 90, 477, 888, 1101, 1137, 1205, 1259, 1275
TaqI TCGA 8 cut(s) 471, 548, 1024, 1047, 1109, 1137, 1143, 1151
TasI AATT 5 cut(s) 45, 223, 467, 559, 1066
TatI WGTACW 2 cut(s) 1122, 1197
TauI GCSGC 8 cut(s) 422, 425, 764, 767, 770, 809, 1057, 1060
TfiI GAWTC 5 cut(s) 55, 322, 550, 850, 1049
Tru1I TTAA 4 cut(s) 246, 275, 332, 945
Tru9I TTAA 4 cut(s) 246, 275, 332, 945
TscAI CASTG 1 cut(s) 629
TseFI GTSAC 2 cut(s) 578, 886
TseI GCWGC 5 cut(s) 298, 734, 782, 827, 965
Tsp45I GTSAC 2 cut(s) 578, 886
TspDTI ATGAA 1 cut(s) 542
TspRI CASTG 1 cut(s) 629
VneI GTGCAC 1 cut(s) 1167
VpaK11BI GGWCC 1 cut(s) 1251
XapI RAATTY 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 1137
XmnI GAANNNNTTC 2 cut(s) 453, 747
XspI CTAG 2 cut(s) 987, 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.