AT1G08620

'FY-rich' domain, N-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002633
Physical Location & Seq
Forward (+)
2736656 .. 2743881
7226 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08620.1

Sequence Viewer

Length: 3630 bp
ATGGGGACAGAGCTAATGAGAATCTGTGTGAAAGAAGATAGTGATGATTTGCCATCTGTTCCTCCTGGTTTTGAATCATATGCAACTTTTACCTTAAAAAGAGTAGTCCCTGCTACTACTTCTGATAAAGCCAAGACTCCTGCAATTGAAAGTGTTTCTGCAACCGAACAAGCTAAGATGGAAGTTGAATCTGATGAAGCCAAAGCTGCTCGGGCTCTACGCCGTAGACCTTGGATTAATCATAGCGGATGTGATGATGATGGTGATTGTGCTGCAAACAATGACAATGCTGCATCTCAAAATCCTGATCAAAATTGTGATGTGAAGCCAGCTCTTCCAAAGGGTGTGGTCAGGGGATGTGAAGAATGTAAAGATTGTCAGAAGGTAACTGCGAGATGGCATCCAGATGAAGCTCGTAGGCCTGACCTTGAGGACGCCCCTGTATTCTACCCGAGCGAAGAGGAGTTTGAAGACACTTTAAATTATATCGCTAAAATAAGACCGGAGGCTGAAAAGTATGGAATCTGTCGCATTGTTCCTCCTCCTTCCTGGAAACCGCCGTGCCCACTGAAAGAAAAGCAAGTATGGGAGGGTTCTAAATTTACAACACGTGTCCAAAGAGTTGATAAACTTCAGAATCGGAGTTCAATGAAGAAGATTTCAAAGCTTCCTAATCAAATGAGAAAGAAGAAAAGAAAGTGCATGAAAATGGGAATGGATTCTGTCACTAATGGTATGGGCGATCCCTGTTCTGCAAGCACTGGAATGAATGAACTTGAGACGTTTGGGTTTGAACCTGGTCCAGGGTTCACACTAAAAGACTTCCAAAAATATGCTGATGAGTTCAAGGCTCAGTACTTTAAAAAGAGTGAAACTTCTACAGACGATAAATGTAAAGTTGATAATTCAATAGACTGCTGGGAGCCAGCACTTGAGGATGTTGAAGGTGAATATTGGCGGATAGTAGATAAAGCAACTGAAGAGATAGAGGTGCTATATGGTGCTGACCTTGAAACTGGGGTATTTGGTAGCGGATTCCCCAAGATATCATCAAGTCACAATGCTTCTTCTTCAGAAGATAAATATGCAAAATCAGGCTGGAACTTAAATAACTTTCCAAGGCTTCCGGGATCCCTCCTTAAGTACGAGGGCAGTGATATTTCCGGTGTCCTTGTGCCGTGGCTGTATATTGGGATGTGCTTTTCTTCTTTCTGCTGGCATGTTGAAGATCACCACTTGTATTCGTTGAATTATATGCACTGGGGTGCACCGAAATTGTGGTATGGTGTTGGGGGGAAGGATGCTGTTAAACTCGAGGAGGCAATGAGGAAGCATTTGCCTGACCTTTTTGAAGAACAGCCTGACTTACTTCATAAGCTAGTTACACAACTCTCCCCGTCAAAACTGAAAACCGCAGGAGTACCTGTGCACCGTTGCGTCCAGCATGCTGGAGAGTTTGTCTTGACTTTTCCTCGGGCATATCATGCTGGATTTAATTCTGGTTTCAACTGTGCTGAAGCTGTGAATGTAGCACCCGTTGACTGGTTACCTCATGGGCAGATTGCCATAGAGTTATACTGTCAACAGGGTAGAAAAACGTCCATCTCGCATGATAAATTGTTGCTTGGGGCAGCAAGGGAAGTAGTGAAAGCCGACTGGGAGCTGAACTTACTAAGGAAAAATACTGTAGATAACTTAAGGTGGAAAGCATTCAGTGCGAAGGATGGAATTTTGGCAAAAACATTAAAGGCACGCATTGACATGGAACGTACGAGAAGAGAATTTCTGTGCAACTCTTCACTTGCATTGAAAATGCACAGTAATTTCGATGCTACCAACGAGAGAGAGTGCTGTATATGCTTCTTTGATTTGCACCTGTCTGCTGCTGGCTGTCGTTGTTCCCCGGAGAAGTATTCATGTTTGACTCATGTGAAGGAGTTGTGTTCATGTCCATGGGTTACTAAATATTTTCTATTTCGCTATGATATCGATGAACTGAATGTTCTTGTTGAGGCAGTGGAAGGAAAACTGAGTTCTGTATATAGATGGGCGCGTCAAGATTTAGGATTGGCATTAAGTACAGACGTCTCAGGAAGCAAGATGGAGATAGATGAAGAAGGAAAAGTCCACAAGGACCCGACTCCACAAACAACTGCACTTTCAGGGAAGGATTTGCAGTTGAAAGTAACATCGAAAGAAGTAAGTAAAGAGTTAGAAAAGACTAGTAAATTATCTCATGTTAATTTACTTCTGAAAGAAAAGGAGGAGCAAATAACGTCAAGTCACTGTATGAAGCCTGTCAAAGAAGAAACTGTTTGTGATTCTTCTGATCCAAACGTTTCAGCTTGCCAACCATCTGAAGGAGGCATAATCTGTATGACAGCTGTTAAGTCCGCAAGTGGTAAAAAGAATTCACAGAGTCTACCCAATGATGTGATACTCCTCAGCGATGATGAGTATGACATACCTAGGAAACGAGGTTCTGTGAGAAGAGATGCAATTTCTTCTGGCAAGAAATTAGAAATACGAGAGAGACCGACCCACGTTTTGGCGTTAGAAGCTTCTGCCAAAATTGCTGCTCCAATTTGCCAAAGGGAAGGAGATTCGCTGCGTGATACACGAAACACTATATCATTGCCTACTAATGACCAAAAAACAATGAGAAGGGATGTACCGAGTTCTACTTCGCACGCGGAAGTTAATGCGGAGGCTACTGGGCTTACTCAAGATATATGTAACAGAATGGCAACTAACAGCCACGGTGGTGGAAAACCTACTAGTTGTAAATCCAAAAACTCTGGAGGTTTGGCTATAGTGGATGTTGTGGATGGGACAAGAAGTAGTTCAGGTACACCGTCTTGTTCGCAAAATAATAGTCCGGATAGGTTCATCCGCCAAAAGGGTCCCCGCATTGCAAAGGTCGTGAGGAGAATCAATTGCAATGTAGAGCCTTTAAGTTATGGATGTGTGCTGTCTGGAAAATCATGGTGCAGCCGGCGAGCAATTTTTCCTAAAGGATTTCGTAGCCGGGTTAAGTACATAAACATTTTGGATCCAACAAATATGTGCTTCTACATTTCAGAAATTCTGGATGCTGGACGCAACAGTCCATTGTTCATGGTTTACTTGGAGAGTAATCCCAGTGAGGTGTTCGTTCATATGTCGCCTACAAGATGCTGGGAGATGGTAAGAGAGAGAGTAAATCAAGAGATAACTAAGCAGCACAAAGCTGGAAAATCAGATCTTCCTCCTTTGCAACCCTCTGGGAGTCCCGACGGTTTTGAAATGTTTGGATATTCGTCACCCGCAATCGTACAGGCTATCGAAGCATTAGACGTGAATCGAGTTTGCACAGACTATTGGGATTCCAGGCCTTATTCCCGGCCACAAGTTCAGTTCCCTGCAAATCCTCTTCTCAGAGAAGCCAACACAAGTGGCAGATCGAATGTGGGAAATCTCCAGCTAAACCCTGGACACCATATATCGCCTACTGGAATAAATTCTATTCTTAAAGTTCTGTTCAAGAAAGCTAGCATGGAGGAACTAAGCTCACTTCAAGAGGTTTTAAGTGAGACTAACTCAGATATGGTGACCGAACTTGTGAAGGAAGAGATCCAGAACCGTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008198 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034720 GO:0036211 GO:0040008 GO:0040009 GO:0040010 GO:0040029 GO:0042054 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045927 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN JmjC JmjN zf-C5HC2

Protein Analysis

1209

Amino Acids

134.99

Weight (kDa)

6.96

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjN PF02375 147 - 180 6.3e-18 jmjN domain
JmjC PF02373 394 - 510 6.9e-44 JmjC domain, hydroxylase
zf-C5HC2 PF02928 617 - 668 1.6e-14 C5HC2 zinc finger
FYRN PF05964 987 - 1031 9e-10 F/Y-rich N-terminus
FYRC PF05965 1037 - 1120 4.9e-21 F/Y rich C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 3105
AatII GACGTC 1 cut(s) 2088
AccB7I CCANNNNNTGG 1 cut(s) 2548
AccI GTMKAC 2 cut(s) 226, 2422
AccII CGCG 2 cut(s) 2053, 2693
AccIII TCCGGA 1 cut(s) 2878
AclI AACGTT 1 cut(s) 2337
AclWI GGATC 7 cut(s) 737, 1125, 1138, 2324, 3047, 3060, 3607
AcoI YGGCCR 1 cut(s) 3383
AcsI RAATTY 6 cut(s) 599, 1728, 1781, 2410, 3084, 3499
AcuI CTGAAG 5 cut(s) 617, 999, 1056, 1536, 2379
AcvI CACGTG 1 cut(s) 611
AcyI GRCGYC 2 cut(s) 435, 2085
AfaI GTAC 9 cut(s) 857, 1145, 1422, 1771, 2080, 2673, 2851, 3038, 3315
AfiI CCNNNNNNNGG 5 cut(s) 803, 1542, 2360, 2548, 2899
AflII CTTAAG 2 cut(s) 1139, 1696
AflIII ACRYGT 2 cut(s) 608, 610
AhlI ACTAGT 2 cut(s) 2222, 2777
AjiI CACGTC 1 cut(s) 3337
AjnI CCWGG 6 cut(s) 64, 548, 796, 802, 3368, 3469
AleI CACNNNNGTG 2 cut(s) 1263, 2763
AloI GAACNNNNNNTCC 2 cut(s) 2464, 2496
Alw21I GWGCWC 2 cut(s) 1270, 1431
Alw26I GTCTC 4 cut(s) 773, 2092, 2527, 3566
Alw44I GTGCAC 2 cut(s) 1266, 1427
AlwI GGATC 7 cut(s) 737, 1125, 1138, 2324, 3047, 3060, 3607
Ama87I CYCGRG 4 cut(s) 210, 451, 1313, 1473
Aor13HI TCCGGA 1 cut(s) 2878
AoxI GGCC 3 cut(s) 419, 3371, 3383
ApaLI GTGCAC 2 cut(s) 1266, 1427
ApeKI GCWGC 9 cut(s) 206, 272, 290, 1631, 1883, 2576, 2608, 2991, 3220
ApoI RAATTY 6 cut(s) 599, 1728, 1781, 2410, 3084, 3499
ArsI GACNNNNNNTTYG 4 cut(s) 2530, 2562, 2860, 2892
AseI ATTAAT 1 cut(s) 237
Asp700I GAANNNNTTC 4 cut(s) 718, 1709, 2842, 3499
AspA2I CCTAGG 1 cut(s) 2468
AspLEI GCGC 1 cut(s) 2053
AspS9I GGNCC 3 cut(s) 800, 2134, 2903
AsuC2I CCSGG 4 cut(s) 1128, 1904, 3029, 3382
AsuHPI GGTGA 5 cut(s) 275, 959, 1223, 3294, 3601
AsuNHI GCTAGC 1 cut(s) 3530
AvaI CYCGRG 4 cut(s) 210, 451, 1313, 1473
AvaII GGWCC 3 cut(s) 800, 2134, 2903
AvrII CCTAGG 1 cut(s) 2468
BaeGI GKGCMC 3 cut(s) 566, 1270, 1431
BamHI GGATCC 2 cut(s) 1130, 3052
BanII GRGCYC 1 cut(s) 217
BbrPI CACGTG 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 477
Bbv12I GWGCWC 2 cut(s) 1270, 1431
BbvCI CCTCAGC 1 cut(s) 2444
BbvI GCAGC 9 cut(s) 193, 259, 277, 1643, 1870, 2563, 2595, 3003, 3232
BceAI ACGGC 3 cut(s) 207, 544, 1162
BciT130I CCWGG 6 cut(s) 66, 550, 798, 804, 3370, 3471
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 4 cut(s) 1128, 1904, 3029, 3382
BcoDI GTCTC 4 cut(s) 773, 2092, 2527, 3566
BcuI ACTAGT 2 cut(s) 2222, 2777
BfaI CTAG 5 cut(s) 1379, 2223, 2469, 2778, 3531
BfmI CTRYAG 3 cut(s) 879, 1686, 2811
BfrI CTTAAG 2 cut(s) 1139, 1696
BglII AGATCT 1 cut(s) 3241
BisI GCNGC 9 cut(s) 207, 273, 291, 1632, 1884, 2577, 2609, 2992, 3221
BlnI CCTAGG 1 cut(s) 2468
BlsI GCNGC 9 cut(s) 208, 274, 292, 1633, 1885, 2578, 2610, 2993, 3222
BmcAI AGTACT 1 cut(s) 857
Bme18I GGWCC 3 cut(s) 800, 2134, 2903
BmeT110I CYCGRG 4 cut(s) 210, 451, 1313, 1473
BmgBI CACGTC 1 cut(s) 3337
BmgT120I GGNCC 3 cut(s) 800, 2134, 2903
BmiI GGNNCC 6 cut(s) 924, 1132, 2136, 2904, 2905, 3054
BmrI ACTGGG 5 cut(s) 1026, 1270, 1666, 2724, 3135
BmsI GCATC 7 cut(s) 302, 409, 1291, 1819, 2485, 3082, 3164
BmtI GCTAGC 1 cut(s) 3534
BmuI ACTGGG 5 cut(s) 1026, 1270, 1666, 2724, 3135
BpiI GAAGAC 1 cut(s) 477
BplI GAGNNNNNCTC 2 cut(s) 3563, 3595
BpmI CTGGAG 3 cut(s) 1470, 2820, 3443
Bpu10I CCTNAGC 1 cut(s) 2444
BpuEI CTTGAG 4 cut(s) 449, 797, 953, 2709
BpuMI CCSGG 4 cut(s) 1128, 1904, 3029, 3382
Bsa29I ATCGAT 1 cut(s) 1989
BsaAI YACGTR 1 cut(s) 611
BsaHI GRCGYC 2 cut(s) 435, 2085
BsaI GGTCTC 1 cut(s) 2527
BsaWI WCCGGW 3 cut(s) 502, 1163, 2878
BsaXI ACNNNNNCTCC 4 cut(s) 1410, 1440, 1443, 1473
Bsc4I CCNNNNNNNGG 5 cut(s) 803, 1542, 2360, 2548, 2899
Bse118I RCCGGY 1 cut(s) 2994
Bse1I ACTGG 8 cut(s) 766, 1021, 1265, 1547, 1661, 2719, 3141, 3496
Bse3DI GCAATG 4 cut(s) 1329, 2633, 2910, 2947
BseAI TCCGGA 1 cut(s) 2878
BseBI CCWGG 6 cut(s) 66, 550, 798, 804, 3370, 3471
BseCI ATCGAT 1 cut(s) 1989
BseLI CCNNNNNNNGG 5 cut(s) 803, 1542, 2360, 2548, 2899
BseMI GCAATG 4 cut(s) 1329, 2633, 2910, 2947
BseMII CTCAG 6 cut(s) 866, 2021, 2103, 2458, 3430, 3594
BseNI ACTGG 8 cut(s) 766, 1021, 1265, 1547, 1661, 2719, 3141, 3496
BseRI GAGGAG 6 cut(s) 476, 531, 1331, 2279, 2432, 2941
BseSI GKGCMC 3 cut(s) 566, 1270, 1431
BseXI GCAGC 9 cut(s) 193, 259, 277, 1643, 1870, 2563, 2595, 3003, 3232
BseYI CCCAGC 2 cut(s) 918, 3177
BsgI GTGCAG 2 cut(s) 2139, 3010
Bsh1236I CGCG 2 cut(s) 2053, 2693
BshFI GGCC 3 cut(s) 421, 3373, 3385
BshVI ATCGAT 1 cut(s) 1989
BsiHKAI GWGCWC 2 cut(s) 1270, 1431
BsiHKCI CYCGRG 4 cut(s) 210, 451, 1313, 1473
BsiSI CCGG 8 cut(s) 503, 1127, 1164, 1904, 2879, 2995, 3028, 3382
BsiWI CGTACG 1 cut(s) 1769
BslFI GGGAC 5 cut(s) 19, 92, 2845, 2889, 3255
BslI CCNNNNNNNGG 5 cut(s) 803, 1542, 2360, 2548, 2899
BsmAI GTCTC 4 cut(s) 773, 2092, 2527, 3566
BsmBI CGTCTC 2 cut(s) 773, 2092
BsmFI GGGAC 5 cut(s) 19, 92, 2845, 2889, 3255
BsmI GAATGC 1 cut(s) 1709
BsnI GGCC 3 cut(s) 421, 3373, 3385
Bso31I GGTCTC 1 cut(s) 2527
BsoBI CYCGRG 4 cut(s) 210, 451, 1313, 1473
Bsp1286I GDGCHC 4 cut(s) 217, 566, 1270, 1431
Bsp13I TCCGGA 1 cut(s) 2878
Bsp143I GATC 9 cut(s) 307, 742, 1130, 1228, 2329, 3052, 3241, 3440, 3612
Bsp19I CCATGG 1 cut(s) 1952
BspANI GGCC 3 cut(s) 421, 3373, 3385
BspCNI CTCAG 6 cut(s) 865, 2022, 2102, 2457, 3429, 3593
BspDI ATCGAT 1 cut(s) 1989
BspEI TCCGGA 1 cut(s) 2878
BspFNI CGCG 2 cut(s) 2053, 2693
BspLI GGNNCC 6 cut(s) 924, 1132, 2136, 2904, 2905, 3054
BspOI GCTAGC 1 cut(s) 3534
BspPI GGATC 7 cut(s) 737, 1125, 1138, 2324, 3047, 3060, 3607
BspQI GCTCTTC 1 cut(s) 339
BspTI CTTAAG 2 cut(s) 1139, 1696
BspTNI GGTCTC 1 cut(s) 2527
BsrDI GCAATG 4 cut(s) 1329, 2633, 2910, 2947
BsrFI RCCGGY 1 cut(s) 2994
BsrI ACTGG 8 cut(s) 766, 1021, 1265, 1547, 1661, 2719, 3141, 3496
BssAI RCCGGY 1 cut(s) 2994
BssMI GATC 9 cut(s) 307, 742, 1130, 1228, 2329, 3052, 3241, 3440, 3612
BssNI GRCGYC 2 cut(s) 435, 2085
BssT1I CCWWGG 4 cut(s) 230, 1118, 1952, 2468
Bst2UI CCWGG 6 cut(s) 66, 550, 798, 804, 3370, 3471
Bst6I CTCTTC 8 cut(s) 339, 453, 975, 1771, 1801, 2485, 3417, 3603
BstACI GRCGYC 2 cut(s) 435, 2085
BstAFI CTTAAG 2 cut(s) 1139, 1696
BstAPI GCANNNNNTGC 2 cut(s) 1484, 1715
BstBAI YACGTR 1 cut(s) 611
BstDSI CCRYGG 3 cut(s) 1178, 1952, 2758
BstEII GGTNACC 2 cut(s) 1545, 3589
BstENI CCTNNNNNAGG 1 cut(s) 801
BstFNI CGCG 2 cut(s) 2053, 2693
BstHHI GCGC 1 cut(s) 2053
BstKTI GATC 9 cut(s) 310, 745, 1133, 1231, 2332, 3055, 3244, 3443, 3615
BstMAI GTCTC 4 cut(s) 773, 2092, 2527, 3566
BstMBI GATC 9 cut(s) 307, 742, 1130, 1228, 2329, 3052, 3241, 3440, 3612
BstMWI GCNNNNNNNGC 8 cut(s) 206, 212, 1484, 1715, 1857, 2558, 2573, 3326
BstNI CCWGG 6 cut(s) 66, 550, 798, 804, 3370, 3471
BstNSI RCATGY 2 cut(s) 1223, 1448
BstPI GGTNACC 2 cut(s) 1545, 3589
BstSFI CTRYAG 3 cut(s) 879, 1686, 2811
BstSLI GKGCMC 3 cut(s) 566, 1270, 1431
BstUI CGCG 2 cut(s) 2053, 2693
BstV1I GCAGC 9 cut(s) 193, 259, 277, 1643, 1870, 2563, 2595, 3003, 3232
BstV2I GAAGAC 1 cut(s) 477
BstX2I RGATCY 4 cut(s) 1130, 3052, 3241, 3612
BstXI CCANNNNNNTGG 2 cut(s) 1448, 2765
BstYI RGATCY 4 cut(s) 1130, 3052, 3241, 3612
Bsu15I ATCGAT 1 cut(s) 1989
BsuRI GGCC 3 cut(s) 421, 3373, 3385
BsuTUI ATCGAT 1 cut(s) 1989
BtgI CCRYGG 3 cut(s) 1178, 1952, 2758
BtgZI GCGATG 1 cut(s) 2463
BtrI CACGTC 1 cut(s) 3337
BtsI GCAGTG 2 cut(s) 1159, 2022
BtsIMutI CAGTG 8 cut(s) 566, 759, 1159, 1258, 1720, 2022, 2284, 3148
CfoI GCGC 1 cut(s) 2053
Cfr10I RCCGGY 1 cut(s) 2994
Cfr13I GGNCC 3 cut(s) 800, 2134, 2903
ClaI ATCGAT 1 cut(s) 1989
CseI GACGC 4 cut(s) 443, 1426, 2042, 3108
CsiI ACCWGGT 1 cut(s) 796
Csp6I GTAC 9 cut(s) 856, 1144, 1421, 1770, 2079, 2672, 2850, 3037, 3314
CspCI CAANNNNNGTGG 4 cut(s) 327, 362, 3415, 3450
CviQI GTAC 9 cut(s) 856, 1144, 1421, 1770, 2079, 2672, 2850, 3037, 3314
DpnI GATC 9 cut(s) 309, 744, 1132, 1230, 2331, 3054, 3243, 3442, 3614
DpnII GATC 9 cut(s) 307, 742, 1130, 1228, 2329, 3052, 3241, 3440, 3612
DraI TTTAAA 2 cut(s) 480, 862
DrdI GACNNNNNNGTC 1 cut(s) 3105
DseDI GACNNNNNNGTC 1 cut(s) 3105
EaeI YGGCCR 1 cut(s) 3383
Eam1104I CTCTTC 8 cut(s) 339, 453, 975, 1771, 1801, 2485, 3417, 3603
EarI CTCTTC 8 cut(s) 339, 453, 975, 1771, 1801, 2485, 3417, 3603
EciI GGCGGA 2 cut(s) 973, 2882
Eco130I CCWWGG 4 cut(s) 230, 1118, 1952, 2468
Eco147I AGGCCT 2 cut(s) 421, 3373
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 2527
Eco32I GATATC 2 cut(s) 1047, 1987
Eco47I GGWCC 3 cut(s) 800, 2134, 2903
Eco57I CTGAAG 5 cut(s) 617, 999, 1056, 1536, 2379
Eco72I CACGTG 1 cut(s) 611
Eco88I CYCGRG 4 cut(s) 210, 451, 1313, 1473
Eco91I GGTNACC 2 cut(s) 1545, 3589
EcoNI CCTNNNNNAGG 1 cut(s) 801
EcoO109I RGGNCCY 2 cut(s) 2134, 2903
EcoO65I GGTNACC 2 cut(s) 1545, 3589
EcoRI GAATTC 1 cut(s) 2410
EcoRII CCWGG 6 cut(s) 64, 548, 796, 802, 3368, 3469
EcoRV GATATC 2 cut(s) 1047, 1987
EcoT14I CCWWGG 4 cut(s) 230, 1118, 1952, 2468
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 4 cut(s) 230, 1118, 1952, 2468
Esp3I CGTCTC 2 cut(s) 773, 2092
FaqI GGGAC 5 cut(s) 19, 92, 2845, 2889, 3255
FauI CCCGC 2 cut(s) 2915, 3313
FauNDI CATATG 2 cut(s) 79, 3159
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 2 cut(s) 226, 2422
Fnu4HI GCNGC 9 cut(s) 207, 273, 291, 1632, 1884, 2577, 2609, 2992, 3221
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 9 cut(s) 207, 273, 291, 1632, 1884, 2577, 2609, 2992, 3221
FspBI CTAG 5 cut(s) 1379, 2223, 2469, 2778, 3531
GlaI GCGC 1 cut(s) 2052
GluI GCNGC 9 cut(s) 207, 273, 291, 1632, 1884, 2577, 2609, 2992, 3221
GsaI CCCAGC 2 cut(s) 922, 3181
GsuI CTGGAG 3 cut(s) 1470, 2820, 3443
HaeIII GGCC 3 cut(s) 421, 3373, 3385
HapII CCGG 8 cut(s) 503, 1127, 1164, 1904, 2879, 2995, 3028, 3382
HgaI GACGC 4 cut(s) 443, 1426, 2042, 3108
HhaI GCGC 1 cut(s) 2053
Hin1I GRCGYC 2 cut(s) 435, 2085
Hin6I GCGC 1 cut(s) 2051
HinP1I GCGC 1 cut(s) 2051
HincII GTYRAC 2 cut(s) 1540, 1583
HindII GTYRAC 2 cut(s) 1540, 1583
HindIII AAGCTT 2 cut(s) 665, 2559
HpaII CCGG 8 cut(s) 503, 1127, 1164, 1904, 2879, 2995, 3028, 3382
HphI GGTGA 5 cut(s) 275, 959, 1223, 3294, 3601
Hpy99I CGWCG 2 cut(s) 3278, 3627
HpyCH4IV ACGT 9 cut(s) 610, 782, 1598, 1768, 2085, 2276, 2337, 2544, 3336
HpyF10VI GCNNNNNNNGC 8 cut(s) 206, 212, 1484, 1715, 1857, 2558, 2573, 3326
HpySE526I ACGT 9 cut(s) 610, 782, 1598, 1768, 2085, 2276, 2337, 2544, 3336
Hsp92I GRCGYC 2 cut(s) 435, 2085
HspAI GCGC 1 cut(s) 2051
KflI GGGWCCC 1 cut(s) 2903
Kpn2I TCCGGA 1 cut(s) 2878
KroI GCCGGC 1 cut(s) 2994
KroNI GCCGGC 1 cut(s) 2996
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 9 cut(s) 307, 742, 1130, 1228, 2329, 3052, 3241, 3440, 3612
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 4 cut(s) 922, 1660, 2266, 2584
Lsp1109I GCAGC 9 cut(s) 193, 259, 277, 1643, 1870, 2563, 2595, 3003, 3232
LweI GCATC 7 cut(s) 302, 409, 1291, 1819, 2485, 3082, 3164
MabI ACCWGGT 1 cut(s) 796
MaeI CTAG 5 cut(s) 1379, 2223, 2469, 2778, 3531
MaeII ACGT 9 cut(s) 610, 782, 1598, 1768, 2085, 2276, 2337, 2544, 3336
MalI GATC 9 cut(s) 309, 744, 1132, 1230, 2331, 3054, 3243, 3442, 3614
MboI GATC 9 cut(s) 307, 742, 1130, 1228, 2329, 3052, 3241, 3440, 3612
MfeI CAATTG 2 cut(s) 144, 2935
MflI RGATCY 4 cut(s) 1130, 3052, 3241, 3612
MhlI GDGCHC 4 cut(s) 217, 566, 1270, 1431
MlyI GAGTC 5 cut(s) 130, 1918, 2134, 2428, 3277
MmeI TCCRAC 1 cut(s) 3080
MroI TCCGGA 1 cut(s) 2878
MroNI GCCGGC 1 cut(s) 2994
MroXI GAANNNNTTC 4 cut(s) 718, 1709, 2842, 3499
MslI CAYNNNNRTG 7 cut(s) 405, 707, 764, 1263, 1760, 1951, 2763
MspA1I CMGCKG 1 cut(s) 2384
MspCI CTTAAG 2 cut(s) 1139, 1696
MspI CCGG 8 cut(s) 503, 1127, 1164, 1904, 2879, 2995, 3028, 3382
MunI CAATTG 2 cut(s) 144, 2935
Mva1269I GAATGC 1 cut(s) 1709
MvaI CCWGG 6 cut(s) 66, 550, 798, 804, 3370, 3471
MvnI CGCG 2 cut(s) 2053, 2693
MwoI GCNNNNNNNGC 8 cut(s) 206, 212, 1484, 1715, 1857, 2558, 2573, 3326
NaeI GCCGGC 1 cut(s) 2996
NciI CCSGG 4 cut(s) 1128, 1904, 3029, 3382
NcoI CCATGG 1 cut(s) 1952
NdeI CATATG 2 cut(s) 79, 3159
NdeII GATC 9 cut(s) 307, 742, 1130, 1228, 2329, 3052, 3241, 3440, 3612
NgoMIV GCCGGC 1 cut(s) 2994
NheI GCTAGC 1 cut(s) 3530
NlaIV GGNNCC 6 cut(s) 924, 1132, 2136, 2904, 2905, 3054
NmuCI GTSAC 5 cut(s) 724, 1055, 2282, 3300, 3589
NspI RCATGY 2 cut(s) 1223, 1448
OliI CACNNNNGTG 2 cut(s) 1263, 2763
PaeI GCATGC 1 cut(s) 1448
PaeR7I CTCGAG 1 cut(s) 1313
PceI AGGCCT 2 cut(s) 421, 3373
PciSI GCTCTTC 1 cut(s) 339
PctI GAATGC 1 cut(s) 1709
PdiI GCCGGC 1 cut(s) 2996
PdmI GAANNNNTTC 4 cut(s) 718, 1709, 2842, 3499
Pfl23II CGTACG 1 cut(s) 1769
PflMI CCANNNNNTGG 1 cut(s) 2548
PfoI TCCNGGA 2 cut(s) 548, 1126
PkrI GCNGC 9 cut(s) 208, 274, 292, 1633, 1885, 2578, 2610, 2993, 3222
PleI GAGTC 5 cut(s) 130, 1918, 2134, 2427, 3276
PmaCI CACGTG 1 cut(s) 611
PmlI CACGTG 1 cut(s) 611
PpsI GAGTC 5 cut(s) 130, 1918, 2134, 2427, 3276
Ppu21I YACGTR 1 cut(s) 611
PpuMI RGGWCCY 2 cut(s) 2134, 2903
PshBI ATTAAT 1 cut(s) 237
Psp1406I AACGTT 1 cut(s) 2337
Psp5II RGGWCCY 2 cut(s) 2134, 2903
Psp6I CCWGG 6 cut(s) 64, 548, 796, 802, 3368, 3469
PspCI CACGTG 1 cut(s) 611
PspEI GGTNACC 2 cut(s) 1545, 3589
PspFI CCCAGC 2 cut(s) 918, 3177
PspGI CCWGG 6 cut(s) 64, 548, 796, 802, 3368, 3469
PspLI CGTACG 1 cut(s) 1769
PspN4I GGNNCC 6 cut(s) 924, 1132, 2136, 2904, 2905, 3054
PspPI GGNCC 3 cut(s) 800, 2134, 2903
PspPPI RGGWCCY 2 cut(s) 2134, 2903
PspXI VCTCGAGB 1 cut(s) 1313
PsuI RGATCY 4 cut(s) 1130, 3052, 3241, 3612
PvuII CAGCTG 1 cut(s) 2384
RsaI GTAC 9 cut(s) 857, 1145, 1422, 1771, 2080, 2673, 2851, 3038, 3315
RsaNI GTAC 9 cut(s) 856, 1144, 1421, 1770, 2079, 2672, 2850, 3037, 3314
RseI CAYNNNNRTG 7 cut(s) 405, 707, 764, 1263, 1760, 1951, 2763
SapI GCTCTTC 1 cut(s) 339
SatI GCNGC 9 cut(s) 207, 273, 291, 1632, 1884, 2577, 2609, 2992, 3221
Sau3AI GATC 9 cut(s) 307, 742, 1130, 1228, 2329, 3052, 3241, 3440, 3612
Sau96I GGNCC 3 cut(s) 800, 2134, 2903
ScaI AGTACT 1 cut(s) 857
SchI GAGTC 5 cut(s) 130, 1918, 2134, 2428, 3277
SduI GDGCHC 4 cut(s) 217, 566, 1270, 1431
SexAI ACCWGGT 1 cut(s) 796
SfaNI GCATC 7 cut(s) 302, 409, 1291, 1819, 2485, 3082, 3164
SfcI CTRYAG 3 cut(s) 879, 1686, 2811
Sfr274I CTCGAG 1 cut(s) 1313
SinI GGWCC 3 cut(s) 800, 2134, 2903
SlaI CTCGAG 1 cut(s) 1313
SmiMI CAYNNNNRTG 7 cut(s) 405, 707, 764, 1263, 1760, 1951, 2763
SmlI CTYRAG 7 cut(s) 428, 776, 932, 1139, 1313, 1696, 2724
SmoI CTYRAG 7 cut(s) 428, 776, 932, 1139, 1313, 1696, 2724
SpeI ACTAGT 2 cut(s) 2222, 2777
SphI GCATGC 1 cut(s) 1448
SseBI AGGCCT 2 cut(s) 421, 3373
SspI AATATT 2 cut(s) 953, 1967
SspMI CTAG 5 cut(s) 1379, 2223, 2469, 2778, 3531
StuI AGGCCT 2 cut(s) 421, 3373
StyI CCWWGG 4 cut(s) 230, 1118, 1952, 2468
TaiI ACGT 9 cut(s) 613, 785, 1601, 1771, 2088, 2279, 2340, 2547, 3339
TaqI TCGA 7 cut(s) 1314, 1827, 1989, 2192, 3324, 3343, 3443
TaqII GACCGA 2 cut(s) 2551, 3608
TatI WGTACW 3 cut(s) 855, 2078, 3036
TscAI CASTG 8 cut(s) 573, 766, 1159, 1265, 1720, 2022, 2291, 3148
TseFI GTSAC 5 cut(s) 724, 1055, 2282, 3300, 3589
TseI GCWGC 9 cut(s) 206, 272, 290, 1631, 1883, 2576, 2608, 2991, 3220
Tsp45I GTSAC 5 cut(s) 724, 1055, 2282, 3300, 3589
TspRI CASTG 8 cut(s) 573, 766, 1159, 1265, 1720, 2022, 2291, 3148
Van91I CCANNNNNTGG 1 cut(s) 2548
Vha464I CTTAAG 2 cut(s) 1139, 1696
VneI GTGCAC 2 cut(s) 1266, 1427
VpaK11BI GGWCC 3 cut(s) 800, 2134, 2903
VspI ATTAAT 1 cut(s) 237
XagI CCTNNNNNAGG 1 cut(s) 801
XapI RAATTY 6 cut(s) 599, 1728, 1781, 2410, 3084, 3499
XceI RCATGY 2 cut(s) 1223, 1448
XcmI CCANNNNNNNNNTGG 1 cut(s) 3467
XhoI CTCGAG 1 cut(s) 1313
XmaJI CCTAGG 1 cut(s) 2468
XmiI GTMKAC 2 cut(s) 226, 2422
XmnI GAANNNNTTC 4 cut(s) 718, 1709, 2842, 3499
XspI CTAG 5 cut(s) 1379, 2223, 2469, 2778, 3531
ZraI GACGTC 1 cut(s) 2086
ZrmI AGTACT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.