Rmu_ssc0000031.1_g000007

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000031.1
OG0002633
Physical Location & Seq
Forward (+)
27642 .. 28232
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000031.1_g000007.1.cds

Sequence Viewer

Length: 591 bp
atgcccgtgactgatgcagctgtgatggttgaaaaagttattagtccgttggctagtgaagaaaaaaaggatttttcatcccattcttattctcatattatgaatgtgaaagatgaacaggagaatgatggacaatcacgatccaattcacctaacctttcttccaaattagcttctgctggggcagaacatggaccagacacttgccatattagtgaacccaaggttgctatttccaggagtgacccgaaagattcacagccatgtcacagtataaaacctgagaacgaggatagacatgaaaagatgggaagaaatgctgatgcaaatatagtggataatgtaagaactgcaatgggaaacccatcatccagccagaacaatttggacagatattatcgccagaagggtccccgtatagcaaaggtagtgcggaggatcacctgcattgttgagcctctagaatttggagtcgtgctctctggaaagtcatggtgtaacagccaagccatttttccgaaaggtatgcggcaattgaatactccagtgagttgtgacactatacatttgttccttgtccccacattctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008198 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034720 GO:0036211 GO:0040008 GO:0040009 GO:0040010 GO:0040029 GO:0042054 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045927 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN JmjC JmjN zf-C5HC2

Protein Analysis

196

Amino Acids

21.66

Weight (kDa)

7.04

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 452
Acc36I ACCTGC 1 cut(s) 452
AciI CCGC 2 cut(s) 433, 529
AclWI GGATC 2 cut(s) 135, 446
AcsI RAATTY 1 cut(s) 464
AgsI TTSAA 2 cut(s) 32, 538
AjnI CCWGG 1 cut(s) 236
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AluBI AGCT 2 cut(s) 20, 173
AluI AGCT 2 cut(s) 20, 173
Alw21I GWGCWC 1 cut(s) 480
AlwI GGATC 2 cut(s) 135, 446
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 464
AspS9I GGNCC 2 cut(s) 194, 410
AsuHPI GGTGA 2 cut(s) 141, 433
AvaII GGWCC 2 cut(s) 194, 410
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 29
BccI CCATC 4 cut(s) 19, 122, 301, 373
BcgI CGANNNNNNTGC 2 cut(s) 508, 542
BciT130I CCWGG 1 cut(s) 238
BfaI CTAG 2 cut(s) 54, 461
BfuAI ACCTGC 1 cut(s) 452
BisI GCNGC 2 cut(s) 18, 530
BlsI GCNGC 2 cut(s) 19, 531
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 2 cut(s) 194, 410
BmgT120I GGNCC 2 cut(s) 194, 410
BmiI GGNNCC 2 cut(s) 411, 412
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 4, 313
BplI GAGNNNNNCTC 2 cut(s) 462, 494
BpmI CTGGAG 1 cut(s) 528
BsaJI CCNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 545
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 77, 368
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 545
BseXI GCAGC 1 cut(s) 29
BseYI CCCAGC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 480
BslFI GGGAC 2 cut(s) 396, 563
BsmFI GGGAC 2 cut(s) 396, 563
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 2 cut(s) 140, 438
BspACI CCGC 2 cut(s) 433, 529
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 411, 412
BspMI ACCTGC 1 cut(s) 452
BspPI GGATC 2 cut(s) 135, 446
BsrDI GCAATG 1 cut(s) 360
BsrI ACTGG 1 cut(s) 545
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 2 cut(s) 140, 438
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 2 cut(s) 77, 368
BstKTI GATC 2 cut(s) 143, 441
BstMBI GATC 2 cut(s) 140, 438
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 29
BtsCI GGATG 2 cut(s) 77, 368
BtsIMutI CAGTG 1 cut(s) 552
BveI ACCTGC 1 cut(s) 452
Cfr13I GGNCC 2 cut(s) 194, 410
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 4 cut(s) 191, 264, 299, 492
CviJI RGCY 8 cut(s) 20, 53, 173, 262, 375, 457, 504, 509
CviKI_1 RGCY 8 cut(s) 20, 53, 173, 262, 375, 457, 504, 509
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 142, 440
DpnII GATC 2 cut(s) 140, 438
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 194, 410
EcoO109I RGGNCCY 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 4 cut(s) 194, 267, 302, 495
FaqI GGGAC 2 cut(s) 396, 563
FatI CATG 4 cut(s) 190, 263, 298, 491
Fnu4HI GCNGC 2 cut(s) 18, 530
FokI GGATG 2 cut(s) 64, 355
Fsp4HI GCNGC 2 cut(s) 18, 530
FspBI CTAG 2 cut(s) 54, 461
GluI GCNGC 2 cut(s) 18, 530
GsaI CCCAGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 528
Hin1II CATG 4 cut(s) 194, 267, 302, 495
HinfI GANTC 2 cut(s) 254, 471
HphI GGTGA 2 cut(s) 141, 433
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 2 cut(s) 519, 590
Hpy188III TCNNGA 3 cut(s) 138, 461, 483
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 4 cut(s) 17, 326, 353, 447
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 4 cut(s) 194, 267, 302, 495
KflI GGGWCCC 1 cut(s) 410
Kzo9I GATC 2 cut(s) 140, 438
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 2 cut(s) 4, 313
MaeI CTAG 2 cut(s) 54, 461
MaeIII GTNAC 5 cut(s) 7, 242, 266, 497, 554
MalI GATC 2 cut(s) 142, 440
MboI GATC 2 cut(s) 140, 438
MboII GAAGA 3 cut(s) 71, 153, 324
MfeI CAATTG 1 cut(s) 533
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 5 cut(s) 145, 167, 382, 464, 533
MlyI GAGTC 1 cut(s) 480
MnlI CCTC 3 cut(s) 283, 429, 468
MslI CAYNNNNRTG 2 cut(s) 213, 262
MspA1I CMGCKG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 238
MunI CAATTG 1 cut(s) 533
MvaI CCWGG 1 cut(s) 238
NdeII GATC 2 cut(s) 140, 438
NlaIII CATG 4 cut(s) 194, 267, 302, 495
NlaIV GGNNCC 2 cut(s) 411, 412
NmuCI GTSAC 4 cut(s) 7, 242, 266, 554
PaqCI CACCTGC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 254
PfoI TCCNGGA 1 cut(s) 236
PkrI GCNGC 2 cut(s) 19, 531
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
PpuMI RGGWCCY 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 179
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 411, 412
PspPI GGNCC 2 cut(s) 194, 410
PspPPI RGGWCCY 1 cut(s) 410
PvuII CAGCTG 1 cut(s) 20
RseI CAYNNNNRTG 2 cut(s) 213, 262
SatI GCNGC 2 cut(s) 18, 530
Sau3AI GATC 2 cut(s) 140, 438
Sau96I GGNCC 2 cut(s) 194, 410
SchI GAGTC 1 cut(s) 480
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 1 cut(s) 480
SetI ASST 9 cut(s) 22, 154, 159, 175, 228, 283, 429, 446, 526
SfaNI GCATC 2 cut(s) 4, 313
SinI GGWCC 2 cut(s) 194, 410
SmiMI CAYNNNNRTG 2 cut(s) 213, 262
Sse9I AATT 5 cut(s) 145, 167, 382, 464, 533
SsiI CCGC 2 cut(s) 433, 529
SspMI CTAG 2 cut(s) 54, 461
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 272
TasI AATT 5 cut(s) 145, 167, 382, 464, 533
TauI GCSGC 1 cut(s) 532
TfiI GAWTC 1 cut(s) 254
TscAI CASTG 1 cut(s) 552
TseFI GTSAC 4 cut(s) 7, 242, 266, 554
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 4 cut(s) 7, 242, 266, 554
TspDTI ATGAA 4 cut(s) 66, 116, 129, 315
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 1 cut(s) 552
VpaK11BI GGWCC 2 cut(s) 194, 410
XapI RAATTY 1 cut(s) 464
XbaI TCTAGA 1 cut(s) 460
XspI CTAG 2 cut(s) 54, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.