FvH4_6g01870

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002633
Physical Location & Seq
Reverse (-)
1031636 .. 1039834
8199 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01870.t1

Sequence Viewer

Length: 3657 bp
ATGGGGACAGAACTCATGAGAGTTTGCTTAAAGGAAGACAACGACGAATTTCCCTCAGTTCCACCTGGATTTGAGTCATTTACATCTTTCAGCTTAAAAAGGGTGAATGACAGTGAGAAACAAGATAGTGAAAACCTAATCACTTGCAATGCCACTACTAGTACTTCTGGATCACAGTCTGTTCCGATGGAAACTGGTAATGATGTTGCTGACGTTGCAAAGAGATCTCAACGGAGGAGGCCAGGGATAAATAATAGACGGTATAATAACTATGCAGAGGATGAGTCTGATTATGAGAGCCTTGATCAAAGTTTTCTACAAAGGTCACTTCTTCCTAAGGGGGTTATACGTGGGTGTCCGGAGTGTAGTACCTGCCAAAAGGTATCTGCAAGATGGCATCCAGGTGATGGTCAAAGGCCTGACATCCAGGATGCTCCAGTATTCAGGCCAACTGAAGAGGAGTTCAAAGATACTTTGAAATACATAGCGAGCATACGCCCAAAAGCTGAACCATATGGTATTTGTCGCATTGTTCCTCCCTCTTCATGGAGACCTCCCTGTCCTCTCAAGGAAAAGAATGTCTGGGAGGCTTCTAAGTTTGCTACTCGCATCCAAAGAGTTGACAAGCTTCAGAATCGAAATTCAATGAGAAAAATTCCTAAAAGTCAAAATCATGCGAGGAAGAAAAGGAGAAGATGCACACGAATGGGGGCTGATTGTCCTGGTGGTGGTAGAGGATTTGGGGATGATGGAAATTGTGAGGCAGAAATTTTTGGGTTTGAACCTGGTCCAATGTTTACTTTAGGAGCGTTTGAAAAATACGCTGATGACTTCAAGACCCAATACTTTAGCAAGAATGAACATGTTACTGATATAGGAAGTCACTTGAGTGAAGTCAAAGAGCGCTGGGAGCCATCTGTGGAAAATATTGAGGGTGAATATTGGCGGATGGTGGAGAAACCTACAGAAGAAATTGAGGTTCTATATGGGGCTGATTTGGAAACAGGAGTTTTTGGAAGTGGTTTTCCCAAGATGTCCCGTCAGGACGGTTCTACTTCAGAGGAGCAGTATATAACATCTGGCTGGAACTTGAACAACTTTCCTAGACTGCCTGGATCTGTCCTTTCTTACGAAAGCAGTGATATATCTGGTGTTCTGGTGCCATGGTTATATATAGGGATGTGCTTTTCTTCCTTTTGCTGGCATGTTGAAGATCACCACTTGTACTCTTTAAATTACATGCATTGGGGTGCTCCAAAGTTGTGGTATGGTATCCCTGGTAGCGAGGCCTGTAGATTTGAAGAGGTTATGAGAAAGCACCTCCCTGACCTATTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTAACACAGCTCTCCCCCTCAATACTGAAATCTAATGGGGTACCAGTGTACAGATGTTGTCAGAATCCTGGAGAGTTTGTTCTGACCTTTCCTCGAGCGTACCACTCAGGATTCAACTGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCTGTTGATTGGTTGCCACATGGACAGGTTGCTATAGAGCTATACCAAGAGCAGGGACGAAAGACATCCATTTCCCACGATAAATTGTTGCTTGGTGCTGCAAGGGAGGCAGTAAGAGCACATTGGGAACTCAATTTACTGAAGAAGAACACTTTCGATAACTTAAGATGGAAAAATGTCTGTGGAAAGGATGGAGTCTTAGCCAAAGTTCTCAAGGCACGTGTTGAAATGGAGCGGGTGAGGAGGGAATTTCTTTGCAATTCTTCCCAGGCATTAAAGATGGAGAGCAATTTTGATGCCACGAGTGAGAGGGAATGCAGTATATGCTTTTTCGATTTGCATCTGTCAGCAGCTGGTTGTCATCAATGTTCCCCAGATAGATATGCTTGCTTGAATCATGCAAAGCAATTCTGTTCTTGTGCTTGGAGCTCTAAGTTTTTCCTCTTCCGTTATGACATCGATGAATTAAACATCCTTCTTGAGGCATTGGAAGGAAAGTTGAGTGCAGTATACAGGTGGGCTAGGCTAGATCTTGGATTGGCCTTGAGTTCTTATATTGGCAAAGACAACATGAAAATTGGTAAATTATCGCACGCCTCCAAGAGTACTATGCTTGAAGGAGTGAGCTCACATCCACAAAGCAATTGTTTTAAAGATCAACTGGGGAAAGAAATCTCTAAAGATGATCCAGGAAGGTCAACTGGGAGAGAAGAATCATTTCTTAGCACTGCCAACTCTCTGCAGGTTTGCCAGTTGTCACGAGAAGACACATCCTATGCTTTGAACTCGGCTGAAAAGGAATCTGGGATGAAGATGACTTCAGTTGAGACTATTATACTTCTTAGTGATGATGAAAGTGATGAGCCCAAGAAGGATGATGGAAGTGATGAGCCAACGAAGCTACATTCAGACAACCTTACAGCGATATCTTCTGCTAATGAGTTAGAACCTTCTAATAGCTTGGTGGCTCCTGATGGAAAAGTGAGCCCTTGTAATGTTGAAAAAGTTGCGGTCTTGAATTTGCCTGTGACAGACGCAGATGTTATGGTTAAAAGAGTTATTAGTCCGTCGGCTAGTGGAGATGAAAAATCTCATATTATAAATGTGAAAGATGAACAGGAGAGTGAAGGTCAATCACGATCCAATTCACCTAACCTTCCTTCCGCATTAGATTCTGTTGGGGCAGAACATGGACCAGACACTTGCCATATTGGTGGGCCAAAGGTTGCTATTTCCAGGAGTGACCCGAAAGATTCACAGCCGTGTGGCAATATAAAACCTGAGAATGAGGACAGACATGAAAAGATAGTAAGAAATGCTGATGCCAATATAGTGGACAATGTGAGAACTGCAACTGGAAACCCATCACCCAGCCAAAATAATTTGGACAGATATTATCGCCAGAAGGGTCCCCGTATTGCAAAGGTAGTGCGGAGGATCACCTGCATTGTTGAGCCTCTAGAATTTGGAGTCGTGATCTCTGGAAAGTCATGGTGTAACAGCCAAGCCATTTTTCCAAAAGGATTTAGGAGCCGGGTTAAGTACATCAGTGTTCTTGATCCTACTGTTAGGTGTTATTATGTCTCGGAAGTACTTGATGCAAGACAGGCTGGACCTCTCTTCATGGTTTCTCTGGAGGAGTGTCCAGGTGAGGTTTTCGTCCATAATTCAGTTGGCAGATGCTGGGATATGGTGAGAGATAGAGTCAATCAAGAAATCACGAGGCACCATAAGTTGGGAAGATCGAACCTTCCTCCTTTGCAGCCACCTGGGAGTCTTGATGGCTTTGAAATGTTTGGGTTTACTTCACCTGTTATTGTACAGGCCATCGAGGCAATGGATAGGAATCGTGTTTGTTCTGAGTACTGGGACTCTCGGCCCTATTCCCGACCTCAAGTACAGATTCCACAAAAAGCTCCATCTGAAGAAACTAGAGAAAACTTAAATGATCAAGAGGCTGCTGGCGTTAGTCTCTTATCTAGTGGGGTTGATGCAATACTTGGAGGCCTGTTCAAGAAGGCTAACCTAGAAGAATTAAACTCACTATACAGCATCTTAAGTGACAATCAGCAAACTGTCGGACGAGGCCTAGTGACGCGACTTCTTAATGAAGAGATTCAAACTCGTCGGCCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008198 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034720 GO:0036211 GO:0040008 GO:0040009 GO:0040010 GO:0040029 GO:0042054 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045927 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN JmjC JmjN zf-C5HC2

Protein Analysis

1219

Amino Acids

136.49

Weight (kDa)

5.86

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjN PF02375 146 - 179 4.6e-18 jmjN domain
JmjC PF02373 389 - 505 2.7e-46 JmjC domain, hydroxylase
zf-C5HC2 PF02928 612 - 664 1.1e-16 C5HC2 zinc finger
FYRN PF05964 994 - 1039 3.8e-11 F/Y-rich N-terminus
FYRC PF05965 1044 - 1128 2.6e-21 F/Y rich C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2618
AarI CACCTGC 1 cut(s) 2969
AasI GACNNNNNNGTC 1 cut(s) 558
Acc36I ACCTGC 3 cut(s) 380, 2251, 2969
Acc65I GGTACC 1 cut(s) 1405
AccB1I GGYRCC 3 cut(s) 1159, 1405, 3243
AccB7I CCANNNNNTGG 2 cut(s) 407, 3253
AccBSI CCGCTC 1 cut(s) 1753
AccI GTMKAC 1 cut(s) 2028
AccII CGCG 1 cut(s) 3616
AccIII TCCGGA 1 cut(s) 358
AciI CCGC 5 cut(s) 946, 1753, 2528, 2682, 2950
AclWI GGATC 6 cut(s) 178, 1123, 2198, 2652, 2963, 3071
AcoI YGGCCR 1 cut(s) 3647
AcsI RAATTY 7 cut(s) 47, 640, 654, 768, 1766, 2536, 2981
AcuI CTGAAG 6 cut(s) 474, 614, 1041, 1679, 2322, 3462
AcvI CACGTG 1 cut(s) 1739
AfeI AGCGCT 1 cut(s) 905
AfiI CCNNNNNNNGG 7 cut(s) 407, 546, 728, 1200, 1570, 1999, 3253
AflII CTTAAG 2 cut(s) 1681, 3574
AflIII ACRYGT 2 cut(s) 862, 1738
AhlI ACTAGT 1 cut(s) 158
AjuI GAANNNNNNNTTGG 2 cut(s) 3015, 3047
AleI CACNNNNGTG 2 cut(s) 888, 2779
AloI GAACNNNNNNTCC 2 cut(s) 1428, 1460
Alw21I GWGCWC 4 cut(s) 1255, 1639, 1949, 2147
Alw26I GTCTC 4 cut(s) 544, 2339, 3106, 3494
AlwI GGATC 6 cut(s) 178, 1123, 2198, 2652, 2963, 3071
AlwNI CAGNNNCTG 2 cut(s) 1871, 3201
Ama87I CYCGRG 1 cut(s) 1458
Aor13HI TCCGGA 1 cut(s) 358
Aor51HI AGCGCT 1 cut(s) 905
ApeKI GCWGC 4 cut(s) 1616, 1868, 3280, 3476
ApoI RAATTY 7 cut(s) 47, 640, 654, 768, 1766, 2536, 2981
Asp700I GAANNNNTTC 3 cut(s) 1670, 2235, 3633
Asp718I GGTACC 1 cut(s) 1405
AspLEI GCGC 1 cut(s) 906
AspS9I GGNCC 6 cut(s) 788, 2711, 2735, 2927, 3131, 3396
AsuC2I CCSGG 1 cut(s) 3053
AvaI CYCGRG 1 cut(s) 1458
AvaII GGWCC 4 cut(s) 788, 2711, 2927, 3131
AxyI CCTNAGG 1 cut(s) 336
BaeI ACNNNNGTAYC 2 cut(s) 1397, 1430
BanI GGYRCC 3 cut(s) 1159, 1405, 3243
BanII GRGCYC 4 cut(s) 1949, 2147, 2385, 2507
BauI CACGAG 3 cut(s) 1819, 2277, 3238
BbrPI CACGTG 1 cut(s) 1739
BbsI GAAGAC 2 cut(s) 42, 2289
Bbv12I GWGCWC 4 cut(s) 1255, 1639, 1949, 2147
BbvI GCAGC 4 cut(s) 1603, 1880, 3292, 3463
BceAI ACGGC 1 cut(s) 2764
BciVI GTATCC 1 cut(s) 1283
BclI TGATCA 2 cut(s) 304, 3466
BcnI CCSGG 1 cut(s) 3053
BcoDI GTCTC 4 cut(s) 544, 2339, 3106, 3494
BcuI ACTAGT 1 cut(s) 158
BfmI CTRYAG 4 cut(s) 963, 1291, 1551, 2258
BfoI RGCGCY 1 cut(s) 907
BfrI CTTAAG 2 cut(s) 1681, 3574
BfuAI ACCTGC 3 cut(s) 380, 2251, 2969
BfuI GTATCC 1 cut(s) 1283
BglI GCCNNNNNGGC 1 cut(s) 3350
BglII AGATCT 2 cut(s) 224, 2047
BisI GCNGC 4 cut(s) 1617, 1869, 3281, 3477
BlsI GCNGC 4 cut(s) 1618, 1870, 3282, 3478
BmcAI AGTACT 4 cut(s) 163, 2125, 3111, 3383
Bme18I GGWCC 4 cut(s) 788, 2711, 2927, 3131
BmeT110I CYCGRG 1 cut(s) 1458
BmgT120I GGNCC 6 cut(s) 788, 2711, 2735, 2927, 3131, 3396
BmiI GGNNCC 8 cut(s) 912, 1161, 1407, 2487, 2928, 2929, 3050, 3245
BmrI ACTGGG 3 cut(s) 2189, 2229, 3394
BmuI ACTGGG 3 cut(s) 2189, 2229, 3394
BpiI GAAGAC 2 cut(s) 42, 2289
BpmI CTGGAG 3 cut(s) 420, 1455, 3173
BpuEI CTTGAG 6 cut(s) 551, 907, 1715, 2018, 2083, 3396
BpuMI CCSGG 1 cut(s) 3053
Bsa29I ATCGAT 1 cut(s) 1977
BsaAI YACGTR 2 cut(s) 350, 1739
BsaBI GATNNNNATC 2 cut(s) 1857, 3363
BsaI GGTCTC 1 cut(s) 544
BsaJI CCNNGG 5 cut(s) 242, 1163, 1276, 1785, 3287
BsaWI WCCGGW 1 cut(s) 358
BsaXI ACNNNNNCTCC 2 cut(s) 1428, 1458
Bsc4I CCNNNNNNNGG 7 cut(s) 407, 546, 728, 1200, 1570, 1999, 3253
Bse1I ACTGG 8 cut(s) 199, 437, 1409, 2184, 2224, 2269, 2878, 3389
Bse21I CCTNAGG 1 cut(s) 336
Bse3DI GCAATG 2 cut(s) 154, 3360
Bse8I GATNNNNATC 2 cut(s) 1857, 3363
BseAI TCCGGA 1 cut(s) 358
BseCI ATCGAT 1 cut(s) 1977
BseDI CCNNGG 5 cut(s) 242, 1163, 1276, 1785, 3287
BseJI GATNNNNATC 2 cut(s) 1857, 3363
BseLI CCNNNNNNNGG 7 cut(s) 407, 546, 728, 1200, 1570, 1999, 3253
BseMI GCAATG 2 cut(s) 154, 3360
BseMII CTCAG 4 cut(s) 69, 1485, 2790, 3369
BseNI ACTGG 8 cut(s) 199, 437, 1409, 2184, 2224, 2269, 2878, 3389
BseRI GAGGAG 5 cut(s) 250, 473, 1076, 1774, 3170
BseXI GCAGC 4 cut(s) 1603, 1880, 3292, 3463
BseYI CCCAGC 3 cut(s) 906, 2888, 3201
BsgI GTGCAG 2 cut(s) 1518, 2043
Bsh1236I CGCG 1 cut(s) 3616
BshNI GGYRCC 3 cut(s) 1159, 1405, 3243
BshVI ATCGAT 1 cut(s) 1977
BsiHKAI GWGCWC 4 cut(s) 1255, 1639, 1949, 2147
BsiHKCI CYCGRG 1 cut(s) 1458
BsiSI CCGG 2 cut(s) 359, 3052
BslFI GGGAC 5 cut(s) 19, 1021, 1587, 2913, 3401
BslI CCNNNNNNNGG 7 cut(s) 407, 546, 728, 1200, 1570, 1999, 3253
BsmAI GTCTC 4 cut(s) 544, 2339, 3106, 3494
BsmFI GGGAC 5 cut(s) 19, 1021, 1587, 2913, 3401
BsmI GAATGC 1 cut(s) 1838
Bso31I GGTCTC 1 cut(s) 544
BsoBI CYCGRG 1 cut(s) 1458
Bsp1286I GDGCHC 6 cut(s) 1255, 1639, 1949, 2147, 2385, 2507
Bsp13I TCCGGA 1 cut(s) 358
Bsp1407I TGTACA 2 cut(s) 1413, 3337
Bsp19I CCATGG 1 cut(s) 1163
BspACI CCGC 5 cut(s) 946, 1753, 2528, 2682, 2950
BspCNI CTCAG 4 cut(s) 68, 1484, 2791, 3370
BspDI ATCGAT 1 cut(s) 1977
BspEI TCCGGA 1 cut(s) 358
BspFNI CGCG 1 cut(s) 3616
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 8 cut(s) 912, 1161, 1407, 2487, 2928, 2929, 3050, 3245
BspMAI CTGCAG 1 cut(s) 2262
BspMI ACCTGC 3 cut(s) 380, 2251, 2969
BspPI GGATC 6 cut(s) 178, 1123, 2198, 2652, 2963, 3071
BspT107I GGYRCC 3 cut(s) 1159, 1405, 3243
BspTI CTTAAG 2 cut(s) 1681, 3574
BspTNI GGTCTC 1 cut(s) 544
BsrBI CCGCTC 1 cut(s) 1753
BsrDI GCAATG 2 cut(s) 154, 3360
BsrGI TGTACA 2 cut(s) 1413, 3337
BsrI ACTGG 8 cut(s) 199, 437, 1409, 2184, 2224, 2269, 2878, 3389
BssECI CCNNGG 5 cut(s) 242, 1163, 1276, 1785, 3287
BssNAI GTATAC 1 cut(s) 2029
BssSI CACGAG 3 cut(s) 1819, 2277, 3238
BssT1I CCWWGG 1 cut(s) 1163
Bst1107I GTATAC 1 cut(s) 2029
Bst2BI CACGAG 3 cut(s) 1819, 2277, 3238
Bst4CI ACNGT 7 cut(s) 113, 177, 261, 1049, 1484, 3085, 3595
Bst6I CTCTTC 6 cut(s) 450, 547, 1296, 1967, 3143, 3624
BstAFI CTTAAG 2 cut(s) 1681, 3574
BstAPI GCANNNNNTGC 1 cut(s) 1842
BstAUI TGTACA 2 cut(s) 1413, 3337
BstBAI YACGTR 2 cut(s) 350, 1739
BstC8I GCNNGC 5 cut(s) 490, 1202, 1906, 2112, 3481
BstDSI CCRYGG 1 cut(s) 1163
BstENI CCTNNNNNAGG 1 cut(s) 1997
BstFNI CGCG 1 cut(s) 3616
BstH2I RGCGCY 1 cut(s) 907
BstHHI GCGC 1 cut(s) 906
BstMAI GTCTC 4 cut(s) 544, 2339, 3106, 3494
BstMWI GCNNNNNNNGC 9 cut(s) 215, 910, 1360, 1625, 1634, 1842, 2416, 3125, 3350
BstNSI RCATGY 3 cut(s) 866, 1208, 1243
BstSFI CTRYAG 4 cut(s) 963, 1291, 1551, 2258
BstUI CGCG 1 cut(s) 3616
BstV1I GCAGC 4 cut(s) 1603, 1880, 3292, 3463
BstV2I GAAGAC 2 cut(s) 42, 2289
BstX2I RGATCY 3 cut(s) 224, 1115, 2047
BstXI CCANNNNNNTGG 3 cut(s) 1263, 2732, 2851
BstYI RGATCY 3 cut(s) 224, 1115, 2047
BstZ17I GTATAC 1 cut(s) 2029
Bsu15I ATCGAT 1 cut(s) 1977
Bsu36I CCTNAGG 1 cut(s) 336
BsuI GTATCC 1 cut(s) 1283
BsuTUI ATCGAT 1 cut(s) 1977
BtgI CCRYGG 1 cut(s) 1163
BtsI GCAGTG 2 cut(s) 1144, 2244
BtsIMutI CAGTG 5 cut(s) 118, 1144, 1416, 2244, 3073
BveI ACCTGC 3 cut(s) 380, 2251, 2969
Cac8I GCNNGC 5 cut(s) 490, 1202, 1906, 2112, 3481
CaiI CAGNNNCTG 2 cut(s) 1871, 3201
CciI TCATGA 1 cut(s) 15
CfoI GCGC 1 cut(s) 906
Cfr13I GGNCC 6 cut(s) 788, 2711, 2735, 2927, 3131, 3396
ClaI ATCGAT 1 cut(s) 1977
CseI GACGC 2 cut(s) 2561, 3622
CsiI ACCWGGT 1 cut(s) 784
DraI TTTAAA 2 cut(s) 1233, 2170
DrdI GACNNNNNNGTC 1 cut(s) 558
DseDI GACNNNNNNGTC 1 cut(s) 558
EaeI YGGCCR 1 cut(s) 3647
Eam1104I CTCTTC 6 cut(s) 450, 547, 1296, 1967, 3143, 3624
EarI CTCTTC 6 cut(s) 450, 547, 1296, 1967, 3143, 3624
EciI GGCGGA 1 cut(s) 961
Ecl136II GAGCTC 2 cut(s) 1947, 2145
Eco130I CCWWGG 1 cut(s) 1163
Eco147I AGGCCT 4 cut(s) 418, 1289, 3525, 3606
Eco24I GRGCYC 4 cut(s) 1949, 2147, 2385, 2507
Eco31I GGTCTC 1 cut(s) 544
Eco32I GATATC 1 cut(s) 2445
Eco47I GGWCC 4 cut(s) 788, 2711, 2927, 3131
Eco47III AGCGCT 1 cut(s) 905
Eco53kI GAGCTC 2 cut(s) 1947, 2145
Eco57I CTGAAG 6 cut(s) 474, 614, 1041, 1679, 2322, 3462
Eco72I CACGTG 1 cut(s) 1739
Eco81I CCTNAGG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 1458
EcoICRI GAGCTC 2 cut(s) 1947, 2145
EcoNI CCTNNNNNAGG 1 cut(s) 1997
EcoO109I RGGNCCY 1 cut(s) 2927
EcoRV GATATC 1 cut(s) 2445
EcoT14I CCWWGG 1 cut(s) 1163
EcoT22I ATGCAT 1 cut(s) 1245
EcoT38I GRGCYC 4 cut(s) 1949, 2147, 2385, 2507
ErhI CCWWGG 1 cut(s) 1163
FaqI GGGAC 5 cut(s) 19, 1021, 1587, 2913, 3401
FauI CCCGC 1 cut(s) 1746
FauNDI CATATG 1 cut(s) 514
FbaI TGATCA 2 cut(s) 304, 3466
FblI GTMKAC 1 cut(s) 2028
Fnu4HI GCNGC 4 cut(s) 1617, 1869, 3281, 3477
FriOI GRGCYC 4 cut(s) 1949, 2147, 2385, 2507
Fsp4HI GCNGC 4 cut(s) 1617, 1869, 3281, 3477
GlaI GCGC 1 cut(s) 905
GluI GCNGC 4 cut(s) 1617, 1869, 3281, 3477
GsaI CCCAGC 3 cut(s) 910, 2892, 3205
GsuI CTGGAG 3 cut(s) 420, 1455, 3173
HaeII RGCGCY 1 cut(s) 907
HapII CCGG 2 cut(s) 359, 3052
HgaI GACGC 2 cut(s) 2561, 3622
HhaI GCGC 1 cut(s) 906
Hin6I GCGC 1 cut(s) 904
HinP1I GCGC 1 cut(s) 904
HincII GTYRAC 2 cut(s) 622, 2217
HindII GTYRAC 2 cut(s) 622, 2217
HindIII AAGCTT 1 cut(s) 626
HpaII CCGG 2 cut(s) 359, 3052
Hpy166II GTNNAC 7 cut(s) 622, 798, 1414, 2029, 2217, 2854, 3321
Hpy8I GTNNAC 7 cut(s) 622, 798, 1414, 2029, 2217, 2854, 3321
Hpy99I CGWCG 3 cut(s) 47, 2590, 3648
HpyCH4III ACNGT 7 cut(s) 113, 177, 261, 1049, 1484, 3085, 3595
HpyCH4IV ACGT 3 cut(s) 213, 349, 1738
HpyF10VI GCNNNNNNNGC 9 cut(s) 215, 910, 1360, 1625, 1634, 1842, 2416, 3125, 3350
HpySE526I ACGT 3 cut(s) 213, 349, 1738
HspAI GCGC 1 cut(s) 904
KflI GGGWCCC 1 cut(s) 2927
Kpn2I TCCGGA 1 cut(s) 358
KpnI GGTACC 1 cut(s) 1409
Ksp22I TGATCA 2 cut(s) 304, 3466
Lsp1109I GCAGC 4 cut(s) 1603, 1880, 3292, 3463
MabI ACCWGGT 1 cut(s) 784
MaeII ACGT 3 cut(s) 213, 349, 1738
MbiI CCGCTC 1 cut(s) 1753
MfeI CAATTG 2 cut(s) 1492, 2161
MflI RGATCY 3 cut(s) 224, 1115, 2047
MhlI GDGCHC 6 cut(s) 1255, 1639, 1949, 2147, 2385, 2507
MlyI GAGTC 7 cut(s) 83, 293, 1722, 2997, 3231, 3301, 3383
MmeI TCCRAC 1 cut(s) 3577
Mph1103I ATGCAT 1 cut(s) 1245
MroI TCCGGA 1 cut(s) 358
MroXI GAANNNNTTC 3 cut(s) 1670, 2235, 3633
MslI CAYNNNNRTG 6 cut(s) 402, 704, 888, 1248, 2730, 2779
MspA1I CMGCKG 1 cut(s) 1871
MspCI CTTAAG 2 cut(s) 1681, 3574
MspI CCGG 2 cut(s) 359, 3052
MunI CAATTG 2 cut(s) 1492, 2161
Mva1269I GAATGC 1 cut(s) 1838
MvnI CGCG 1 cut(s) 3616
MwoI GCNNNNNNNGC 9 cut(s) 215, 910, 1360, 1625, 1634, 1842, 2416, 3125, 3350
NciI CCSGG 1 cut(s) 3053
NcoI CCATGG 1 cut(s) 1163
NdeI CATATG 1 cut(s) 514
NlaIV GGNNCC 8 cut(s) 912, 1161, 1407, 2487, 2928, 2929, 3050, 3245
NmeAIII GCCGAG 2 cut(s) 2285, 3373
NmuCI GTSAC 7 cut(s) 324, 881, 2274, 2545, 2759, 3578, 3610
NsiI ATGCAT 1 cut(s) 1245
NspI RCATGY 3 cut(s) 866, 1208, 1243
OliI CACNNNNGTG 2 cut(s) 888, 2779
PaeR7I CTCGAG 1 cut(s) 1458
PagI TCATGA 1 cut(s) 15
PaqCI CACCTGC 1 cut(s) 2969
PceI AGGCCT 4 cut(s) 418, 1289, 3525, 3606
PciI ACATGT 1 cut(s) 862
PctI GAATGC 1 cut(s) 1838
PdmI GAANNNNTTC 3 cut(s) 1670, 2235, 3633
PflMI CCANNNNNTGG 2 cut(s) 407, 3253
PfoI TCCNGGA 4 cut(s) 426, 1432, 2206, 2753
PkrI GCNGC 4 cut(s) 1618, 1870, 3282, 3478
PleI GAGTC 7 cut(s) 82, 292, 1721, 2996, 3230, 3300, 3383
PmaCI CACGTG 1 cut(s) 1739
PmlI CACGTG 1 cut(s) 1739
PpsI GAGTC 7 cut(s) 82, 292, 1721, 2996, 3230, 3300, 3383
Ppu21I YACGTR 2 cut(s) 350, 1739
PpuMI RGGWCCY 1 cut(s) 2927
PscI ACATGT 1 cut(s) 862
PsiI TTATAA 1 cut(s) 2618
Psp124BI GAGCTC 2 cut(s) 1949, 2147
Psp5II RGGWCCY 1 cut(s) 2927
PspCI CACGTG 1 cut(s) 1739
PspFI CCCAGC 3 cut(s) 906, 2888, 3201
PspN4I GGNNCC 8 cut(s) 912, 1161, 1407, 2487, 2928, 2929, 3050, 3245
PspPI GGNCC 6 cut(s) 788, 2711, 2735, 2927, 3131, 3396
PspPPI RGGWCCY 1 cut(s) 2927
PspXI VCTCGAGB 1 cut(s) 1458
PsrI GAACNNNNNNTAC 2 cut(s) 1638, 1670
PstI CTGCAG 1 cut(s) 2262
PstNI CAGNNNCTG 2 cut(s) 1871, 3201
PsuI RGATCY 3 cut(s) 224, 1115, 2047
PvuII CAGCTG 1 cut(s) 1871
RseI CAYNNNNRTG 6 cut(s) 402, 704, 888, 1248, 2730, 2779
SacI GAGCTC 2 cut(s) 1949, 2147
SatI GCNGC 4 cut(s) 1617, 1869, 3281, 3477
Sau96I GGNCC 6 cut(s) 788, 2711, 2735, 2927, 3131, 3396
ScaI AGTACT 4 cut(s) 163, 2125, 3111, 3383
SchI GAGTC 7 cut(s) 83, 293, 1722, 2997, 3231, 3301, 3383
SduI GDGCHC 6 cut(s) 1255, 1639, 1949, 2147, 2385, 2507
SexAI ACCWGGT 1 cut(s) 784
SfcI CTRYAG 4 cut(s) 963, 1291, 1551, 2258
Sfr274I CTCGAG 1 cut(s) 1458
SinI GGWCC 4 cut(s) 788, 2711, 2927, 3131
SlaI CTCGAG 1 cut(s) 1458
SmiMI CAYNNNNRTG 6 cut(s) 402, 704, 888, 1248, 2730, 2779
SmlI CTYRAG 9 cut(s) 566, 886, 1458, 1681, 1730, 1997, 2062, 3411, 3574
SmoI CTYRAG 9 cut(s) 566, 886, 1458, 1681, 1730, 1997, 2062, 3411, 3574
SpeI ACTAGT 1 cut(s) 158
SseBI AGGCCT 4 cut(s) 418, 1289, 3525, 3606
SsiI CCGC 5 cut(s) 946, 1753, 2528, 2682, 2950
SspI AATATT 2 cut(s) 928, 941
SstI GAGCTC 2 cut(s) 1949, 2147
StuI AGGCCT 4 cut(s) 418, 1289, 3525, 3606
StyI CCWWGG 1 cut(s) 1163
TaaI ACNGT 7 cut(s) 113, 177, 261, 1049, 1484, 3085, 3595
TaiI ACGT 3 cut(s) 216, 352, 1741
TaqI TCGA 7 cut(s) 637, 1459, 1674, 1851, 1977, 3263, 3348
TatI WGTACW 9 cut(s) 161, 1224, 1413, 2123, 3060, 3109, 3337, 3381, 3415
TscAI CASTG 5 cut(s) 118, 1144, 1416, 2251, 3073
TseFI GTSAC 7 cut(s) 324, 881, 2274, 2545, 2759, 3578, 3610
TseI GCWGC 4 cut(s) 1616, 1868, 3280, 3476
Tsp45I GTSAC 7 cut(s) 324, 881, 2274, 2545, 2759, 3578, 3610
TspGWI ACGGA 3 cut(s) 247, 1955, 2574
TspRI CASTG 5 cut(s) 118, 1144, 1416, 2251, 3073
Van91I CCANNNNNTGG 2 cut(s) 407, 3253
Vha464I CTTAAG 2 cut(s) 1681, 3574
VpaK11BI GGWCC 4 cut(s) 788, 2711, 2927, 3131
XagI CCTNNNNNAGG 1 cut(s) 1997
XapI RAATTY 7 cut(s) 47, 640, 654, 768, 1766, 2536, 2981
XbaI TCTAGA 1 cut(s) 2977
XceI RCATGY 3 cut(s) 866, 1208, 1243
XcmI CCANNNNNNNNNTGG 2 cut(s) 3188, 3352
XhoI CTCGAG 1 cut(s) 1458
XmiI GTMKAC 1 cut(s) 2028
XmnI GAANNNNTTC 3 cut(s) 1670, 2235, 3633
ZrmI AGTACT 4 cut(s) 163, 2125, 3111, 3383
Zsp2I ATGCAT 1 cut(s) 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.