Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002085

Physical Location & Seq

Genomic Coordinates Reverse (-)

2743761 .. 2747967

Gene Structure 4207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08630.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGTGATGAGAAGTGTGGATCTACGATCAGATACCGTTACTAGACCGACAGATGCGATGCGAGAAGCAATGTGTAACGCAGAGGTGGATGATGACGTCCTCGGATATGACCCAACGGCTAGACGTCTTGAAGAGGAGATGGCTAAGATGATGGGGAAAGAGGCTGCTCTGTTCGTGCCATCCGGGACAATGGGGAATCTGATCAGCGTGATGGTTCACTGCGACGTGAGAGGCAGCGAGGTGATTCTTGGCGACAATTGTCACATCCATGTTTACGAGAATGGAGGGATATCGACTATCGGGGGAGTGCATCCTAAGACAGTCAAGAATGAAGAAGACGGGACCATGGACTTGGAGGCCATTGAAGCAGCTATTAGAGATCCTAAAGGAAGCACGTTTTATCCATCAACAAGGTTGATTTGCTTGGAGAACACACATGCCAACTCTGGTGGGAGATGTTTGAGCGTGGAATACACTGAGAAAGTTGGAGAGATTGCGAAGAGACATGGCGTGAAGCTCCATATCGACGGAGCCCGTCTTTTCAATGCTTCCATTGCACTTGGAGTTCCAGTCCATAAGCTTGTTAAGGCTGCGGACTCCGTTCAGGTGTGTCTCTCTAAAGGTCTTGGAGCTCCGGTAGGATCTGTAATCGTTGGTTCGCAAAGCTTCATAGAGAAGGCGAAAACGGTTAGGAAAACATTAGGTGGAGGAATGAGACAAATAGGTGTTCTGTGCGCAGCCGCTTTGGTCGCACTCCAAGAAAACCTCCCAAAGCTACAACATGACCACAAGAAGGCTAAGTTGTTAGCTGAAGGGTTGAATCAAATGAAAGGGATTAGAGTAAATGTTGCAGCCGTGGAGACCAACATGATTTTCATGGATATGGAGGATGGTTCAAGACTTACGGCTGAGAAACTGCGGAAGAATCTAGAGGAGAATGGCATTCTCCTTATCCGGGGAAACTCATCCCGGATCAGAATAGTTATACACCACCAGATAACAACAAGTGATGTGCATTACACATTGTCTTGCTTTCAGCAAGCAATGCTAACGATGCAGGAACCAAGCCGAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

358

Amino Acids

38.94

Weight (kDa)

6.9

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta_elim_lyase	PF01212	7 - 295	3.6e-115	Beta-eliminating lyase
Aminotran_1_2	PF00155	16 - 335	3.8e-14	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT3G04520 AT3G04520 AT3G04520
fragaria_vesca	FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941
malus_domestica	MD12G1246700.v1.1
prunus_persica	Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1
pyrus_communis	pycom12g22610
rosa_chinensis	RchiOBHm_Chr3g0449781
rosa_laevigata	RLG00000025800
rosa_multiflora	Rmu_sc0000610.1_g000012
rosa_roxburghii	Rroxscaffold_6G00427610
rosa_rugosa	Rorug02G0622900 Rorug02G0623000 Rorug02G0623100 Rorug02G0623200 Rorug02G0623300
rosa_samantha	Rh3AG021500 Rh3BG022200 Rh3CG020800 Rh3DG021900
rosa_wichuraiana	Rw3G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	99, 127
Acc16I	TGCGCA	1 cut(s)	736
AciI	CCGC	3 cut(s)	593, 741, 919
AclWI	GGATC	4 cut(s)	27, 374, 649, 980
AcuI	CTGAAG	1 cut(s)	831
AcyI	GRCGYC	2 cut(s)	96, 124
AfiI	CCNNNNNNNGG	2 cut(s)	793, 955
AgsI	TTSAA	5 cut(s)	131, 365, 544, 820, 897
AjiI	CACGTC	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	857, 889
AluBI	AGCT	7 cut(s)	371, 517, 580, 632, 666, 775, 809
AluI	AGCT	7 cut(s)	371, 517, 580, 632, 666, 775, 809
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	4 cut(s)	496, 617, 709, 854
AlwI	GGATC	4 cut(s)	27, 374, 649, 980
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	6 cut(s)	164, 234, 368, 590, 737, 851
AspLEI	GCGC	1 cut(s)	737
AspS9I	GGNCC	1 cut(s)	342
AsuC2I	CCSGG	3 cut(s)	184, 956, 970
AsuHPI	GGTGA	2 cut(s)	16, 253
AvaII	GGWCC	1 cut(s)	342
BanII	GRGCYC	2 cut(s)	535, 634
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	6 cut(s)	151, 246, 380, 577, 749, 863
BccI	CCATC	6 cut(s)	133, 145, 187, 205, 412, 884
BceAI	ACGGC	3 cut(s)	132, 839, 921
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	3 cut(s)	184, 956, 970
BcoDI	GTCTC	4 cut(s)	496, 617, 709, 854
BfaI	CTAG	3 cut(s)	42, 120, 929
BisI	GCNGC	7 cut(s)	165, 235, 369, 591, 738, 741, 852
BlsI	GCNGC	7 cut(s)	166, 236, 370, 592, 739, 742, 853
Bme1390I	CCNGG	3 cut(s)	184, 956, 970
Bme18I	GGWCC	1 cut(s)	342
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	342
BmiI	GGNNCC	3 cut(s)	343, 532, 1062
BmrFI	CCNGG	3 cut(s)	184, 956, 970
BmsI	GCATC	4 cut(s)	43, 48, 319, 1044
BoxI	GACNNNNGTC	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	342
BpuMI	CCSGG	3 cut(s)	184, 956, 970
BsaHI	GRCGYC	2 cut(s)	96, 124
BsaI	GGTCTC	1 cut(s)	854
BsaJI	CCNNGG	4 cut(s)	100, 345, 855, 955
BsaWI	WCCGGW	1 cut(s)	634
BsaXI	ACNNNNNCTCC	4 cut(s)	555, 585, 621, 651
Bsc4I	CCNNNNNNNGG	2 cut(s)	793, 955
Bse1I	ACTGG	1 cut(s)	569
Bse3DI	GCAATG	3 cut(s)	75, 552, 1050
BseDI	CCNNGG	4 cut(s)	100, 345, 855, 955
BseGI	GGATG	6 cut(s)	94, 179, 264, 310, 895, 965
BseLI	CCNNNNNNNGG	2 cut(s)	793, 955
BseMI	GCAATG	3 cut(s)	75, 552, 1050
BseMII	CTCAG	2 cut(s)	468, 900
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	2 cut(s)	149, 947
BseXI	GCAGC	6 cut(s)	151, 246, 380, 577, 749, 863
BshFI	GGCC	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	634
BsiSI	CCGG	4 cut(s)	183, 635, 955, 970
BslFI	GGGAC	2 cut(s)	199, 355
BslI	CCNNNNNNNGG	2 cut(s)	793, 955
BsmAI	GTCTC	4 cut(s)	496, 617, 709, 854
BsmFI	GGGAC	2 cut(s)	199, 355
BsmI	GAATGC	1 cut(s)	942
BsnI	GGCC	1 cut(s)	359
Bso31I	GGTCTC	1 cut(s)	854
Bsp1286I	GDGCHC	2 cut(s)	535, 634
Bsp143I	GATC	6 cut(s)	19, 26, 201, 379, 641, 972
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	3 cut(s)	593, 741, 919
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	2 cut(s)	469, 901
BspLI	GGNNCC	3 cut(s)	343, 532, 1062
BspPI	GGATC	4 cut(s)	27, 374, 649, 980
BspTNI	GGTCTC	1 cut(s)	854
BsrDI	GCAATG	3 cut(s)	75, 552, 1050
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	4 cut(s)	100, 345, 855, 955
BssMI	GATC	6 cut(s)	19, 26, 201, 379, 641, 972
BssNI	GRCGYC	2 cut(s)	96, 124
BssT1I	CCWWGG	1 cut(s)	345
Bst4CI	ACNGT	3 cut(s)	37, 322, 688
Bst6I	CTCTTC	2 cut(s)	126, 494
BstACI	GRCGYC	2 cut(s)	96, 124
BstAPI	GCANNNNNTGC	1 cut(s)	1045
BstC8I	GCNNGC	1 cut(s)	1041
BstDEI	CTNAG	5 cut(s)	144, 315, 477, 798, 909
BstDSI	CCRYGG	2 cut(s)	345, 855
BstF5I	GGATG	6 cut(s)	94, 179, 264, 310, 895, 965
BstHHI	GCGC	1 cut(s)	737
BstKTI	GATC	6 cut(s)	22, 29, 204, 382, 644, 975
BstMAI	GTCTC	4 cut(s)	496, 617, 709, 854
BstMBI	GATC	6 cut(s)	19, 26, 201, 379, 641, 972
BstMWI	GCNNNNNNNGC	5 cut(s)	365, 554, 749, 1045, 1054
BstNSI	RCATGY	1 cut(s)	440
BstPAI	GACNNNNGTC	1 cut(s)	258
BstSCI	CCNGG	3 cut(s)	182, 954, 968
BstV1I	GCAGC	6 cut(s)	151, 246, 380, 577, 749, 863
BstV2I	GAAGAC	1 cut(s)	342
BstX2I	RGATCY	3 cut(s)	19, 379, 641
BstXI	CCANNNNNNTGG	1 cut(s)	352
BstYI	RGATCY	3 cut(s)	19, 379, 641
BsuRI	GGCC	1 cut(s)	359
BtgI	CCRYGG	2 cut(s)	345, 855
BtgZI	GCGATG	1 cut(s)	71
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	6 cut(s)	94, 179, 264, 310, 895, 965
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	2 cut(s)	217, 474
Cac8I	GCNNGC	1 cut(s)	1041
CfoI	GCGC	1 cut(s)	737
Cfr13I	GGNCC	1 cut(s)	342
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	7 cut(s)	269, 346, 437, 506, 782, 868, 877
DdeI	CTNAG	5 cut(s)	144, 315, 477, 798, 909
DpnI	GATC	6 cut(s)	21, 28, 203, 381, 643, 974
DpnII	GATC	6 cut(s)	19, 26, 201, 379, 641, 972
Eam1104I	CTCTTC	2 cut(s)	126, 494
EarI	CTCTTC	2 cut(s)	126, 494
Ecl136II	GAGCTC	1 cut(s)	632
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	2 cut(s)	535, 634
Eco31I	GGTCTC	1 cut(s)	854
Eco32I	GATATC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	342
Eco53kI	GAGCTC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	831
EcoICRI	GAGCTC	1 cut(s)	632
EcoRV	GATATC	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	2 cut(s)	535, 634
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	7 cut(s)	272, 349, 440, 509, 785, 871, 880
FaqI	GGGAC	2 cut(s)	199, 355
FatI	CATG	7 cut(s)	268, 345, 436, 505, 781, 867, 876
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	7 cut(s)	165, 235, 369, 591, 738, 741, 852
FokI	GGATG	6 cut(s)	101, 166, 251, 297, 902, 952
FriOI	GRGCYC	2 cut(s)	535, 634
Fsp4HI	GCNGC	7 cut(s)	165, 235, 369, 591, 738, 741, 852
FspBI	CTAG	3 cut(s)	42, 120, 929
FspI	TGCGCA	1 cut(s)	736
GlaI	GCGC	1 cut(s)	736
GluI	GCNGC	7 cut(s)	165, 235, 369, 591, 738, 741, 852
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	4 cut(s)	183, 635, 955, 970
HhaI	GCGC	1 cut(s)	737
Hin1I	GRCGYC	2 cut(s)	96, 124
Hin1II	CATG	7 cut(s)	272, 349, 440, 509, 785, 871, 880
Hin6I	GCGC	1 cut(s)	735
HinP1I	GCGC	1 cut(s)	735
HindIII	AAGCTT	2 cut(s)	578, 664
HinfI	GANTC	5 cut(s)	196, 244, 596, 820, 925
HpaII	CCGG	4 cut(s)	183, 635, 955, 970
HphI	GGTGA	2 cut(s)	16, 253
Hpy166II	GTNNAC	2 cut(s)	217, 274
Hpy188I	TCNGA	4 cut(s)	31, 104, 201, 977
Hpy188III	TCNNGA	4 cut(s)	128, 325, 897, 929
Hpy8I	GTNNAC	2 cut(s)	217, 274
Hpy99I	CGWCG	2 cut(s)	227, 530
HpyAV	CCTTC	3 cut(s)	670, 787, 806
HpyCH4III	ACNGT	3 cut(s)	37, 322, 688
HpyCH4IV	ACGT	4 cut(s)	96, 124, 225, 395
HpyCH4V	TGCA	5 cut(s)	310, 557, 851, 1015, 1057
HpyF10VI	GCNNNNNNNGC	5 cut(s)	365, 554, 749, 1045, 1054
HpyF3I	CTNAG	5 cut(s)	144, 315, 477, 798, 909
HpySE526I	ACGT	4 cut(s)	96, 124, 225, 395
Hsp92I	GRCGYC	2 cut(s)	96, 124
Hsp92II	CATG	7 cut(s)	272, 349, 440, 509, 785, 871, 880
HspAI	GCGC	1 cut(s)	735
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	6 cut(s)	19, 26, 201, 379, 641, 972
LmnI	GCTCC	4 cut(s)	522, 530, 629, 637
LpnPI	CCDG	9 cut(s)	196, 432, 582, 590, 648, 968, 983, 1007, 1043
Lsp1109I	GCAGC	6 cut(s)	151, 246, 380, 577, 749, 863
LweI	GCATC	4 cut(s)	43, 48, 319, 1044
MaeI	CTAG	3 cut(s)	42, 120, 929
MaeII	ACGT	4 cut(s)	96, 124, 225, 395
MaeIII	GTNAC	3 cut(s)	37, 74, 260
MalI	GATC	6 cut(s)	21, 28, 203, 381, 643, 974
MboI	GATC	6 cut(s)	19, 26, 201, 379, 641, 972
MboII	GAAGA	5 cut(s)	143, 344, 347, 511, 934
MfeI	CAATTG	1 cut(s)	256
MflI	RGATCY	3 cut(s)	19, 379, 641
MhlI	GDGCHC	2 cut(s)	535, 634
MluCI	AATT	1 cut(s)	256
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	1 cut(s)	466
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	2 cut(s)	267, 881
MspI	CCGG	4 cut(s)	183, 635, 955, 970
MspR9I	CCNGG	3 cut(s)	184, 956, 970
MunI	CAATTG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	942
MwoI	GCNNNNNNNGC	5 cut(s)	365, 554, 749, 1045, 1054
NciI	CCSGG	3 cut(s)	184, 956, 970
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	6 cut(s)	19, 26, 201, 379, 641, 972
NlaIII	CATG	7 cut(s)	272, 349, 440, 509, 785, 871, 880
NlaIV	GGNNCC	3 cut(s)	343, 532, 1062
NmuCI	GTSAC	1 cut(s)	260
NsbI	TGCGCA	1 cut(s)	736
NspI	RCATGY	1 cut(s)	440
PctI	GAATGC	1 cut(s)	942
PfeI	GAWTC	4 cut(s)	196, 244, 820, 925
PfoI	TCCNGGA	2 cut(s)	182, 968
PkrI	GCNGC	7 cut(s)	166, 236, 370, 592, 739, 742, 853
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
PshAI	GACNNNNGTC	1 cut(s)	258
Psp124BI	GAGCTC	1 cut(s)	634
PspN4I	GGNNCC	3 cut(s)	343, 532, 1062
PspPI	GGNCC	1 cut(s)	342
PsuI	RGATCY	3 cut(s)	19, 379, 641
RseI	CAYNNNNRTG	2 cut(s)	267, 881
SacI	GAGCTC	1 cut(s)	634
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	7 cut(s)	165, 235, 369, 591, 738, 741, 852
Sau3AI	GATC	6 cut(s)	19, 26, 201, 379, 641, 972
Sau96I	GGNCC	1 cut(s)	342
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	3 cut(s)	184, 956, 970
SduI	GDGCHC	2 cut(s)	535, 634
SfaNI	GCATC	4 cut(s)	43, 48, 319, 1044
SinI	GGWCC	1 cut(s)	342
SmiMI	CAYNNNNRTG	2 cut(s)	267, 881
Sse9I	AATT	1 cut(s)	256
SsiI	CCGC	3 cut(s)	593, 741, 919
SspMI	CTAG	3 cut(s)	42, 120, 929
SstI	GAGCTC	1 cut(s)	634
StyD4I	CCNGG	3 cut(s)	182, 954, 968
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	3 cut(s)	37, 322, 688
TaiI	ACGT	4 cut(s)	99, 127, 228, 398
TaqI	TCGA	2 cut(s)	293, 525
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	1 cut(s)	256
TauI	GCSGC	1 cut(s)	743
TfiI	GAWTC	4 cut(s)	196, 244, 820, 925
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	2 cut(s)	224, 481
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	6 cut(s)	164, 234, 368, 590, 737, 851
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	4 cut(s)	345, 658, 842, 865
TspGWI	ACGGA	2 cut(s)	543, 589
TspRI	CASTG	2 cut(s)	224, 481
VpaK11BI	GGWCC	1 cut(s)	342
XbaI	TCTAGA	1 cut(s)	928
XceI	RCATGY	1 cut(s)	440
XspI	CTAG	3 cut(s)	42, 120, 929
ZraI	GACGTC	2 cut(s)	97, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.