Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002085

Physical Location & Seq

Genomic Coordinates Reverse (-)

1424153 .. 1432329

Gene Structure 8177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG021500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGTAACTCAAACGGTTGACCTCCGTTCCGACACTGTCACAAAACCAACCGAGACAATGCGGGCAGCCATGGCAGCTGCTGAGGTTGATGATGATGTACTTGGCTATGATCCAACAGCATTCCGCTTGGAAACAGAAATGGCAAAGATCATGGGGAAGGAAGCAGCAGTTTTTGTACCATCAGGCACTATGGGAAACCTCATTAGTGTGCTTGTTCACTGTGACATTAGAGGAAGTGAAGTCATTCTTGGGCATAATTCCCACATTCATATCTATGAGAATGGAGGCATCTCAACAATTGGAGGTGTACATCCAAGAACAGTGAAAAACAACAATGACGGGACAATGGACCTTGATTTAATTGAAGCCACCATTAGGGATCCAAGAGGAGAGCTTGTGTTTCCAACCACGAGACTTATCTGCTTAGAGAACTCACATGCAAACTGCGGTGGTAGATGCTTAACTGTGGAGTACACAGACAGAGTGGGAGAGATAGCCAAGAAGCATGACTTAAAGCTTCATATTGATGGTGCCCGCATTTTCAATGCATCTGTTGCACTTGGTGTTCCAGTTGATAGACTTGTGCAAGCTGCTGATTCAGTTTCGGTTTGTCTCTCAAAAGGTATTGGTGCTCCTGTTGGATCTGTCATTGTTGGATCCGAAAGCTTCATTACTAAGGCTAGAAGGCTCAGGAAAACTTTAGGTGGTGGAATGAGACAGGTCGGCATCCTTTGTGCAGGTGCTTTGGTGGCTTTACATGAAAATGTTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGACTTTAGCAGAGGGACTAAATCAAATCAAAGGATTAAGGGTGGATACTGAGACGGTTGAGACAAATATTCTGTACGTTCATATTCTTGAGGGATCAACAATCACCACAGAAAAGTTGTATAAGAAATTGGAAGAATATGGTATACTTACGATGAAAGAAAGCTCATCAAGCATTAGGATTGTTCTCCACCACCAAATTTCAGCAAGTGATGTGCAGTACACTTTGTCCTGCTTTCAGAAAGCTCTGACCGGAGCCCCTGAAGAAAATGGACACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

359

Amino Acids

38.72

Weight (kDa)

6.17

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta_elim_lyase	PF01212	7 - 294	3.7e-108	Beta-eliminating lyase
Aminotran_1_2	PF00155	18 - 331	2.8e-10	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT3G04520 AT3G04520 AT3G04520
fragaria_vesca	FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941
malus_domestica	MD12G1246700.v1.1
prunus_persica	Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1
pyrus_communis	pycom12g22610
rosa_chinensis	RchiOBHm_Chr3g0449781
rosa_laevigata	RLG00000025800
rosa_multiflora	Rmu_sc0000610.1_g000012
rosa_roxburghii	Rroxscaffold_6G00427610
rosa_rugosa	Rorug02G0622900 Rorug02G0623000 Rorug02G0623100 Rorug02G0623200 Rorug02G0623300
rosa_samantha	Rh3AG021500 Rh3BG022200 Rh3CG020800 Rh3DG021900
rosa_wichuraiana	Rw3G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	728
Acc36I	ACCTGC	1 cut(s)	728
AccB1I	GGYRCC	1 cut(s)	530
AccI	GTMKAC	1 cut(s)	943
AciI	CCGC	4 cut(s)	61, 124, 447, 535
AclWI	GGATC	7 cut(s)	104, 374, 387, 649, 651, 664, 901
AcsI	RAATTY	1 cut(s)	996
AcuI	CTGAAG	1 cut(s)	1080
AdeI	CACNNNGTG	1 cut(s)	563
AfaI	GTAC	6 cut(s)	99, 177, 309, 473, 875, 1019
AfiI	CCNNNNNNNGG	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	365, 544
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	9 cut(s)	77, 394, 517, 590, 666, 775, 797, 963, 1043
AluI	AGCT	9 cut(s)	77, 394, 517, 590, 666, 775, 797, 963, 1043
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	6 cut(s)	47, 406, 617, 709, 845, 854
AlwI	GGATC	7 cut(s)	104, 374, 387, 649, 651, 664, 901
AlwNI	CAGNNNCTG	1 cut(s)	80
ApeKI	GCWGC	5 cut(s)	65, 74, 77, 164, 590
ApoI	RAATTY	1 cut(s)	996
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	2 cut(s)	794, 895
AvaII	GGWCC	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	535
BamHI	GGATCC	2 cut(s)	379, 656
BanI	GGYRCC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	1057
BauI	CACGAG	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	634
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	5 cut(s)	64, 77, 86, 176, 577
BccI	CCATC	2 cut(s)	187, 521
BciVI	GTATCC	1 cut(s)	838
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	6 cut(s)	47, 406, 617, 709, 845, 854
BfaI	CTAG	1 cut(s)	681
BfuAI	ACCTGC	1 cut(s)	728
BfuI	GTATCC	1 cut(s)	838
BisI	GCNGC	5 cut(s)	66, 75, 78, 165, 591
BlsI	GCNGC	5 cut(s)	67, 76, 79, 166, 592
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	4 cut(s)	381, 532, 658, 1054
BmsI	GCATC	4 cut(s)	297, 446, 557, 735
Bpu10I	CCTNAGC	2 cut(s)	81, 689
BpuEI	CTTGAG	2 cut(s)	797, 908
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	1049
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	2 cut(s)	310, 726
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMII	CTCAG	3 cut(s)	72, 703, 840
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	1 cut(s)	402
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	5 cut(s)	64, 77, 86, 176, 577
BsgI	GTGCAG	2 cut(s)	756, 1034
BshNI	GGYRCC	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	634
BsiSI	CCGG	1 cut(s)	1050
BslFI	GGGAC	2 cut(s)	355, 828
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmAI	GTCTC	6 cut(s)	47, 406, 617, 709, 845, 854
BsmBI	CGTCTC	1 cut(s)	845
BsmFI	GGGAC	2 cut(s)	355, 828
BsmI	GAATGC	1 cut(s)	119
Bsp1286I	GDGCHC	3 cut(s)	535, 634, 1057
Bsp1407I	TGTACA	1 cut(s)	307
Bsp143I	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	4 cut(s)	61, 124, 447, 535
BspCNI	CTCAG	3 cut(s)	73, 702, 841
BspLI	GGNNCC	4 cut(s)	381, 532, 658, 1054
BspMI	ACCTGC	1 cut(s)	728
BspPI	GGATC	7 cut(s)	104, 374, 387, 649, 651, 664, 901
BspT107I	GGYRCC	1 cut(s)	530
BsrGI	TGTACA	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
BssNAI	GTATAC	1 cut(s)	944
BssSI	CACGAG	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	69
Bst1107I	GTATAC	1 cut(s)	944
Bst2BI	CACGAG	1 cut(s)	409
Bst4CI	ACNGT	6 cut(s)	16, 37, 221, 322, 466, 856
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstAUI	TGTACA	1 cut(s)	307
BstC8I	GCNNGC	3 cut(s)	63, 535, 588
BstDEI	CTNAG	6 cut(s)	81, 424, 675, 689, 798, 849
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	310, 726
BstKTI	GATC	7 cut(s)	112, 150, 382, 644, 659, 787, 896
BstMAI	GTCTC	6 cut(s)	47, 406, 617, 709, 845, 854
BstMBI	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 74, 554, 749, 969
BstNSI	RCATGY	1 cut(s)	440
BstSLI	GKGCMC	1 cut(s)	535
BstV1I	GCAGC	5 cut(s)	64, 77, 86, 176, 577
BstX2I	RGATCY	3 cut(s)	379, 641, 656
BstYI	RGATCY	3 cut(s)	379, 641, 656
BstZ17I	GTATAC	1 cut(s)	944
BsuI	GTATCC	1 cut(s)	838
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	310, 726
BtsIMutI	CAGTG	3 cut(s)	33, 217, 327
BveI	ACCTGC	1 cut(s)	728
Cac8I	GCNNGC	3 cut(s)	63, 535, 588
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	349
Csp6I	GTAC	6 cut(s)	98, 176, 308, 472, 874, 1018
CviAII	CATG	5 cut(s)	70, 151, 437, 506, 758
CviQI	GTAC	6 cut(s)	98, 176, 308, 472, 874, 1018
DdeI	CTNAG	6 cut(s)	81, 424, 675, 689, 798, 849
DpnI	GATC	7 cut(s)	111, 149, 381, 643, 658, 786, 895
DpnII	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
DraIII	CACNNNGTG	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	1057
Eco47I	GGWCC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	1080
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	1057
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	845
FaeI	CATG	5 cut(s)	73, 154, 440, 509, 761
FalI	AAGNNNNNCTT	4 cut(s)	231, 263, 494, 526
FaqI	GGGAC	2 cut(s)	355, 828
FatI	CATG	5 cut(s)	69, 150, 436, 505, 757
FauI	CCCGC	2 cut(s)	54, 542
FbaI	TGATCA	1 cut(s)	784
FblI	GTMKAC	1 cut(s)	943
Fnu4HI	GCNGC	5 cut(s)	66, 75, 78, 165, 591
FokI	GGATG	2 cut(s)	297, 713
FriOI	GRGCYC	1 cut(s)	1057
Fsp4HI	GCNGC	5 cut(s)	66, 75, 78, 165, 591
FspBI	CTAG	1 cut(s)	681
GluI	GCNGC	5 cut(s)	66, 75, 78, 165, 591
HapII	CCGG	1 cut(s)	1050
Hin1II	CATG	5 cut(s)	73, 154, 440, 509, 761
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	3 cut(s)	515, 664, 773
HinfI	GANTC	1 cut(s)	596
HpaII	CCGG	1 cut(s)	1050
HphI	GGTGA	2 cut(s)	794, 895
Hpy166II	GTNNAC	6 cut(s)	19, 217, 308, 474, 944, 1020
Hpy188I	TCNGA	4 cut(s)	31, 661, 1038, 1047
Hpy188III	TCNNGA	2 cut(s)	691, 887
Hpy8I	GTNNAC	6 cut(s)	19, 217, 308, 474, 944, 1020
HpyAV	CCTTC	2 cut(s)	151, 678
HpyCH4III	ACNGT	6 cut(s)	16, 37, 221, 322, 466, 856
HpyCH4IV	ACGT	1 cut(s)	876
HpyCH4V	TGCA	7 cut(s)	440, 548, 557, 586, 737, 770, 1015
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 74, 554, 749, 969
HpyF3I	CTNAG	6 cut(s)	81, 424, 675, 689, 798, 849
HpySE526I	ACGT	1 cut(s)	876
Hsp92II	CATG	5 cut(s)	73, 154, 440, 509, 761
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
LmnI	GCTCC	2 cut(s)	637, 1052
LpnPI	CCDG	9 cut(s)	168, 582, 648, 676, 704, 723, 1042, 1063, 1071
Lsp1109I	GCAGC	5 cut(s)	64, 77, 86, 176, 577
LweI	GCATC	4 cut(s)	297, 446, 557, 735
MaeI	CTAG	1 cut(s)	681
MaeII	ACGT	1 cut(s)	876
MaeIII	GTNAC	3 cut(s)	4, 37, 221
MalI	GATC	7 cut(s)	111, 149, 381, 643, 658, 786, 895
MboI	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
MboII	GAAGA	2 cut(s)	944, 1073
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	3 cut(s)	379, 641, 656
MhlI	GDGCHC	3 cut(s)	535, 634, 1057
MluCI	AATT	5 cut(s)	256, 297, 360, 926, 996
MmeI	TCCRAC	5 cut(s)	54, 137, 428, 619, 634
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	4 cut(s)	359, 461, 512, 836
MslI	CAYNNNNRTG	4 cut(s)	206, 273, 525, 762
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	1050
MunI	CAATTG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	119
MwoI	GCNNNNNNNGC	5 cut(s)	71, 74, 554, 749, 969
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
NlaIII	CATG	5 cut(s)	73, 154, 440, 509, 761
NlaIV	GGNNCC	4 cut(s)	381, 532, 658, 1054
NmuCI	GTSAC	2 cut(s)	37, 221
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	440
PaqCI	CACCTGC	1 cut(s)	728
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	596
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	5 cut(s)	67, 76, 79, 166, 592
PspN4I	GGNNCC	4 cut(s)	381, 532, 658, 1054
PspPI	GGNCC	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	3 cut(s)	379, 641, 656
PsyI	GACNNNGTC	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	6 cut(s)	99, 177, 309, 473, 875, 1019
RsaNI	GTAC	6 cut(s)	98, 176, 308, 472, 874, 1018
RseI	CAYNNNNRTG	4 cut(s)	206, 273, 525, 762
SaqAI	TTAA	4 cut(s)	359, 461, 512, 836
SatI	GCNGC	5 cut(s)	66, 75, 78, 165, 591
Sau3AI	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
Sau96I	GGNCC	1 cut(s)	349
SduI	GDGCHC	3 cut(s)	535, 634, 1057
SfaNI	GCATC	4 cut(s)	297, 446, 557, 735
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	4 cut(s)	206, 273, 525, 762
SmlI	CTYRAG	2 cut(s)	776, 887
SmoI	CTYRAG	2 cut(s)	776, 887
Sse9I	AATT	5 cut(s)	256, 297, 360, 926, 996
SsiI	CCGC	4 cut(s)	61, 124, 447, 535
SspI	AATATT	1 cut(s)	868
SspMI	CTAG	1 cut(s)	681
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	6 cut(s)	16, 37, 221, 322, 466, 856
TaiI	ACGT	1 cut(s)	879
TasI	AATT	5 cut(s)	256, 297, 360, 926, 996
TatI	WGTACW	4 cut(s)	97, 307, 471, 1017
TfiI	GAWTC	1 cut(s)	596
Tru1I	TTAA	4 cut(s)	359, 461, 512, 836
Tru9I	TTAA	4 cut(s)	359, 461, 512, 836
TscAI	CASTG	3 cut(s)	40, 224, 327
TseFI	GTSAC	2 cut(s)	37, 221
TseI	GCWGC	5 cut(s)	65, 74, 77, 164, 590
Tsp45I	GTSAC	2 cut(s)	37, 221
TspDTI	ATGAA	6 cut(s)	257, 509, 658, 774, 869, 968
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	3 cut(s)	40, 224, 327
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	996
XceI	RCATGY	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	943
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	1 cut(s)	681
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.