Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000610.1

Orthogroup ID

OG0002085

Physical Location & Seq

Genomic Coordinates Forward (+)

46576 .. 49727

Gene Structure 3152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000610.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atggtaactcaaacggttgacctccgttccgacactgtcacgaaaccaaccgagacaatgcgggcagccatggcagctgcggaggttgatgatgatgtacttggctatgatccaacagcatttcgcttggaaacagaaatggcaaagatcatggggaaggaagcagcagtttttgtaccatcaggcactatgggaaacctcattagtgtgcttgttcactgtgacattagaggaagtgaagtcattcttgggcataattcccacattcatatctatgagaatggaggcatctcaacaattggaggtgtacatccaagaacagtgaaaaacaacaatgacgggacaatggaccttgatttaattgaagccaccattagggatccaagaggagagcttgtgtttccaaccacgagacttatctgcttagagaactcacatgcaaactgtggtggtagatgcttaactgtggagtacacagacagagtgggagagatagccaagaagcatgacttaaagcttcatattgatggtgcccgcattttcaatgcatctgtttatctaattcaaaatattggtttacaggcacttggtgttccagttgatagacttgtgcaagctgctgattcagtttcggtttgtctctcaaaaggtattggtgctcctgttggatctgtcattgttggatccgaaagcttcattactaaggctagaaggctcaggaaaactttaggtggtggaatgagacaggtcggcatcctttgtgcaggtgctttggtggctttacatgaaaatgttgcaaagcttgagggtgatcacaagaaagctaagactttagcagagggactaaatcaaatcaaaggattaagggtggatactgagacggttgagacaaatattctgtacgttcatattcttgagggatcaacaatcaccacagaaaagttgtataagaaattggaagaatatggtatacttacgatgaaagaaagctcatcaagcattaggattgttctccaccaccaaatttcagcaagtgatgtgcagtacactttgtcctgctttcagaaagctctgaccggagcccctgaagaaaatggacaccagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

368

Amino Acids

39.76

Weight (kDa)

6.17

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT3G04520 AT3G04520 AT3G04520
fragaria_vesca	FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941
malus_domestica	MD12G1246700.v1.1
prunus_persica	Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1
pyrus_communis	pycom12g22610
rosa_chinensis	RchiOBHm_Chr3g0449781
rosa_laevigata	RLG00000025800
rosa_multiflora	Rmu_sc0000610.1_g000012
rosa_roxburghii	Rroxscaffold_6G00427610
rosa_rugosa	Rorug02G0622900 Rorug02G0623000 Rorug02G0623100 Rorug02G0623200 Rorug02G0623300
rosa_samantha	Rh3AG021500 Rh3BG022200 Rh3CG020800 Rh3DG021900
rosa_wichuraiana	Rw3G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	755
Acc36I	ACCTGC	1 cut(s)	755
AccB1I	GGYRCC	1 cut(s)	530
AccI	GTMKAC	1 cut(s)	970
AciI	CCGC	3 cut(s)	61, 80, 535
AclWI	GGATC	7 cut(s)	104, 374, 387, 676, 678, 691, 928
AcsI	RAATTY	1 cut(s)	1023
AcuI	CTGAAG	1 cut(s)	1107
AdeI	CACNNNGTG	1 cut(s)	590
AfaI	GTAC	6 cut(s)	99, 177, 309, 473, 902, 1046
AfiI	CCNNNNNNNGG	1 cut(s)	375
AgsI	TTSAA	3 cut(s)	365, 544, 566
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	9 cut(s)	77, 394, 517, 617, 693, 802, 824, 990, 1070
AluI	AGCT	9 cut(s)	77, 394, 517, 617, 693, 802, 824, 990, 1070
Alw21I	GWGCWC	1 cut(s)	661
Alw26I	GTCTC	6 cut(s)	47, 406, 644, 736, 872, 881
AlwI	GGATC	7 cut(s)	104, 374, 387, 676, 678, 691, 928
ApeKI	GCWGC	5 cut(s)	65, 74, 77, 164, 617
ApoI	RAATTY	1 cut(s)	1023
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	2 cut(s)	821, 922
AvaII	GGWCC	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	535
BamHI	GGATCC	2 cut(s)	379, 683
BanI	GGYRCC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	1084
BauI	CACGAG	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	661
BbvI	GCAGC	5 cut(s)	64, 77, 86, 176, 604
BccI	CCATC	2 cut(s)	187, 521
BciVI	GTATCC	1 cut(s)	865
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	6 cut(s)	47, 406, 644, 736, 872, 881
BfaI	CTAG	1 cut(s)	708
BfuAI	ACCTGC	1 cut(s)	755
BfuI	GTATCC	1 cut(s)	865
BisI	GCNGC	5 cut(s)	66, 75, 78, 165, 618
BlsI	GCNGC	5 cut(s)	67, 76, 79, 166, 619
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	4 cut(s)	381, 532, 685, 1081
BmsI	GCATC	4 cut(s)	297, 446, 557, 762
Bpu10I	CCTNAGC	1 cut(s)	716
BpuEI	CTTGAG	2 cut(s)	824, 935
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	1076
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse1I	ACTGG	2 cut(s)	596, 1102
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	2 cut(s)	310, 753
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMII	CTCAG	2 cut(s)	730, 867
BseNI	ACTGG	2 cut(s)	596, 1102
BseRI	GAGGAG	1 cut(s)	402
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	5 cut(s)	64, 77, 86, 176, 604
BsgI	GTGCAG	2 cut(s)	783, 1061
BshNI	GGYRCC	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	661
BsiSI	CCGG	1 cut(s)	1077
BslFI	GGGAC	2 cut(s)	355, 855
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmAI	GTCTC	6 cut(s)	47, 406, 644, 736, 872, 881
BsmBI	CGTCTC	1 cut(s)	872
BsmFI	GGGAC	2 cut(s)	355, 855
Bsp1286I	GDGCHC	3 cut(s)	535, 661, 1084
Bsp1407I	TGTACA	1 cut(s)	307
Bsp143I	GATC	7 cut(s)	109, 147, 379, 668, 683, 811, 920
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	3 cut(s)	61, 80, 535
BspCNI	CTCAG	2 cut(s)	729, 868
BspLI	GGNNCC	4 cut(s)	381, 532, 685, 1081
BspMI	ACCTGC	1 cut(s)	755
BspPI	GGATC	7 cut(s)	104, 374, 387, 676, 678, 691, 928
BspT107I	GGYRCC	1 cut(s)	530
BsrGI	TGTACA	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	596, 1102
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	7 cut(s)	109, 147, 379, 668, 683, 811, 920
BssNAI	GTATAC	1 cut(s)	971
BssSI	CACGAG	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	69
Bst1107I	GTATAC	1 cut(s)	971
Bst2BI	CACGAG	1 cut(s)	409
Bst4CI	ACNGT	7 cut(s)	16, 37, 221, 322, 446, 466, 883
BstAUI	TGTACA	1 cut(s)	307
BstC8I	GCNNGC	3 cut(s)	63, 535, 615
BstDEI	CTNAG	5 cut(s)	424, 702, 716, 825, 876
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	310, 753
BstKTI	GATC	7 cut(s)	112, 150, 382, 671, 686, 814, 923
BstMAI	GTCTC	6 cut(s)	47, 406, 644, 736, 872, 881
BstMBI	GATC	7 cut(s)	109, 147, 379, 668, 683, 811, 920
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 74, 776, 996
BstNSI	RCATGY	1 cut(s)	440
BstSLI	GKGCMC	1 cut(s)	535
BstV1I	GCAGC	5 cut(s)	64, 77, 86, 176, 604
BstX2I	RGATCY	3 cut(s)	379, 668, 683
BstYI	RGATCY	3 cut(s)	379, 668, 683
BstZ17I	GTATAC	1 cut(s)	971
BsuI	GTATCC	1 cut(s)	865
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	310, 753
BtsIMutI	CAGTG	3 cut(s)	33, 217, 327
BveI	ACCTGC	1 cut(s)	755
Cac8I	GCNNGC	3 cut(s)	63, 535, 615
Cfr13I	GGNCC	1 cut(s)	349
Csp6I	GTAC	6 cut(s)	98, 176, 308, 472, 901, 1045
CviAII	CATG	5 cut(s)	70, 151, 437, 506, 785
CviQI	GTAC	6 cut(s)	98, 176, 308, 472, 901, 1045
DdeI	CTNAG	5 cut(s)	424, 702, 716, 825, 876
DpnI	GATC	7 cut(s)	111, 149, 381, 670, 685, 813, 922
DpnII	GATC	7 cut(s)	109, 147, 379, 668, 683, 811, 920
DraIII	CACNNNGTG	1 cut(s)	590
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	1084
Eco47I	GGWCC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	1107
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	1084
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	872
FaeI	CATG	5 cut(s)	73, 154, 440, 509, 788
FalI	AAGNNNNNCTT	4 cut(s)	231, 263, 494, 526
FaqI	GGGAC	2 cut(s)	355, 855
FatI	CATG	5 cut(s)	69, 150, 436, 505, 784
FauI	CCCGC	2 cut(s)	54, 542
FbaI	TGATCA	1 cut(s)	811
FblI	GTMKAC	1 cut(s)	970
Fnu4HI	GCNGC	5 cut(s)	66, 75, 78, 165, 618
FokI	GGATG	2 cut(s)	297, 740
FriOI	GRGCYC	1 cut(s)	1084
Fsp4HI	GCNGC	5 cut(s)	66, 75, 78, 165, 618
FspBI	CTAG	1 cut(s)	708
GluI	GCNGC	5 cut(s)	66, 75, 78, 165, 618
HapII	CCGG	1 cut(s)	1077
Hin1II	CATG	5 cut(s)	73, 154, 440, 509, 788
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	3 cut(s)	515, 691, 800
HinfI	GANTC	1 cut(s)	623
HpaII	CCGG	1 cut(s)	1077
HphI	GGTGA	2 cut(s)	821, 922
Hpy166II	GTNNAC	7 cut(s)	19, 217, 308, 474, 578, 971, 1047
Hpy188I	TCNGA	4 cut(s)	31, 688, 1065, 1074
Hpy188III	TCNNGA	3 cut(s)	40, 718, 914
Hpy8I	GTNNAC	7 cut(s)	19, 217, 308, 474, 578, 971, 1047
HpyAV	CCTTC	2 cut(s)	151, 705
HpyCH4III	ACNGT	7 cut(s)	16, 37, 221, 322, 446, 466, 883
HpyCH4IV	ACGT	1 cut(s)	903
HpyCH4V	TGCA	6 cut(s)	440, 548, 613, 764, 797, 1042
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 74, 776, 996
HpyF3I	CTNAG	5 cut(s)	424, 702, 716, 825, 876
HpySE526I	ACGT	1 cut(s)	903
Hsp92II	CATG	5 cut(s)	73, 154, 440, 509, 788
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	7 cut(s)	109, 147, 379, 668, 683, 811, 920
LmnI	GCTCC	2 cut(s)	664, 1079
Lsp1109I	GCAGC	5 cut(s)	64, 77, 86, 176, 604
LweI	GCATC	4 cut(s)	297, 446, 557, 762
MaeI	CTAG	1 cut(s)	708
MaeII	ACGT	1 cut(s)	903
MaeIII	GTNAC	3 cut(s)	4, 37, 221
MalI	GATC	7 cut(s)	111, 149, 381, 670, 685, 813, 922
MboI	GATC	7 cut(s)	109, 147, 379, 668, 683, 811, 920
MboII	GAAGA	2 cut(s)	971, 1100
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	3 cut(s)	379, 668, 683
MhlI	GDGCHC	3 cut(s)	535, 661, 1084
MluCI	AATT	6 cut(s)	256, 297, 360, 561, 953, 1023
MmeI	TCCRAC	5 cut(s)	54, 137, 428, 646, 661
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	4 cut(s)	359, 461, 512, 863
MslI	CAYNNNNRTG	4 cut(s)	206, 273, 525, 789
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	1077
MunI	CAATTG	1 cut(s)	297
MwoI	GCNNNNNNNGC	4 cut(s)	71, 74, 776, 996
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	7 cut(s)	109, 147, 379, 668, 683, 811, 920
NlaIII	CATG	5 cut(s)	73, 154, 440, 509, 788
NlaIV	GGNNCC	4 cut(s)	381, 532, 685, 1081
NmuCI	GTSAC	2 cut(s)	37, 221
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	440
PaqCI	CACCTGC	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	623
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	5 cut(s)	67, 76, 79, 166, 619
PspN4I	GGNNCC	4 cut(s)	381, 532, 685, 1081
PspPI	GGNCC	1 cut(s)	349
PsuI	RGATCY	3 cut(s)	379, 668, 683
PsyI	GACNNNGTC	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	6 cut(s)	99, 177, 309, 473, 902, 1046
RsaNI	GTAC	6 cut(s)	98, 176, 308, 472, 901, 1045
RseI	CAYNNNNRTG	4 cut(s)	206, 273, 525, 789
SaqAI	TTAA	4 cut(s)	359, 461, 512, 863
SatI	GCNGC	5 cut(s)	66, 75, 78, 165, 618
Sau3AI	GATC	7 cut(s)	109, 147, 379, 668, 683, 811, 920
Sau96I	GGNCC	1 cut(s)	349
SduI	GDGCHC	3 cut(s)	535, 661, 1084
SfaNI	GCATC	4 cut(s)	297, 446, 557, 762
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	4 cut(s)	206, 273, 525, 789
SmlI	CTYRAG	2 cut(s)	803, 914
SmoI	CTYRAG	2 cut(s)	803, 914
Sse9I	AATT	6 cut(s)	256, 297, 360, 561, 953, 1023
SsiI	CCGC	3 cut(s)	61, 80, 535
SspI	AATATT	2 cut(s)	571, 895
SspMI	CTAG	1 cut(s)	708
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	7 cut(s)	16, 37, 221, 322, 446, 466, 883
TaiI	ACGT	1 cut(s)	906
TasI	AATT	6 cut(s)	256, 297, 360, 561, 953, 1023
TatI	WGTACW	4 cut(s)	97, 307, 471, 1044
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	4 cut(s)	359, 461, 512, 863
Tru9I	TTAA	4 cut(s)	359, 461, 512, 863
TscAI	CASTG	3 cut(s)	40, 224, 327
TseFI	GTSAC	2 cut(s)	37, 221
TseI	GCWGC	5 cut(s)	65, 74, 77, 164, 617
Tsp45I	GTSAC	2 cut(s)	37, 221
TspDTI	ATGAA	6 cut(s)	257, 509, 685, 801, 896, 995
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	3 cut(s)	40, 224, 327
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	1023
XceI	RCATGY	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	970
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	1 cut(s)	708
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.