Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002085

Physical Location & Seq

Genomic Coordinates Forward (+)

29823471 .. 29829045

Gene Structure 5575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G349500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGTAGCCGAAAACAATTTCTTTTCTTCAGCAAAAATGGTGACTAAAACGGTCGATCTCCGATCTGACACTGTCACTAAACCAACCGAAACAATGCGGGCTGCAATGGCATCTGCTGAAGTTGATGATGATGTACTGGGAAATGACCCAACCGCATTCCGCTTAGAATCAGAGATGGCAAAGATCACGGGCAAGGAAGCAGCCCTTTTTGTTCCATCAGGGACAATGGGAAACCTCATCAGTGTGCTTGTTCATTGTGACATTAGAGGAAGTGAAGTAATTCTTGGACATAATTCCCACATTCATATTTATGAGAATGGAGGCATCTCAACAATTGGAGGTGTGCACCCCAGAACAGTCAGAAACAACAAAGATGGAACAATGGATCTTGATTCAATTGAAGCCGCCATCAGGGACCCGAGAGGGGAGCTTGTGTATCCGACGACGAGGCTCATCTGCTTGGAAAATTCACATGCAAACTGCGGTGGTAGATGCCTGACTGCAGAGTACACAGACCGAGTGGGAGAAATAGCCAAGGAGCATGGTTTGAAGCTTCACATTGATGGGGCTCGCATTTTCAATGCATCAGTTGCACTTGGTGTTCCTGTTGATAGGCTTGTGCAAGCTGCTGATTCAGTTTCGGTATGTCTGTCAAAAGGTATTGGTGCTCCTGTTGGATCTGTCATTGTTGGTTCCAAAAGCTTTATTACTAAGGCTAGAAGGCTCAGGAAAACCTTAGGAGGTGGAATGAGACAGGTTGGTATCCTTTGTGCTGCTGCTTTGGTCGCTTTACATGAGAATGTTGCAAAGCTTGAGACCGATCACAAGAGAGCTAAAATTTTAGCAGAGGGACTAAATCAAATCAAAGGACTAAGAGTAGATATTGATACCGTTGAGACCAACATTATATATATTCATGTTGTAGAGGGGTCAAATATTAGTGCAGAAAAACTACTCATGAACTTGGAAGAACACGGTATACTCATGATGCGTGAGAGCTCGTCAAGCGTTAGGATTGTTCTCCACCACCAAATTTCGGCAAGTGATGTGCAATACACTTTATCATGCTTTCAGCGAGCTCTGACTGGAGGCCATGATGAAAATAATGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

372

Amino Acids

39.91

Weight (kDa)

6.31

Isoelectric Point (pI)

28.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT3G04520 AT3G04520 AT3G04520
fragaria_vesca	FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941
malus_domestica	MD12G1246700.v1.1
prunus_persica	Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1
pyrus_communis	pycom12g22610
rosa_chinensis	RchiOBHm_Chr3g0449781
rosa_laevigata	RLG00000025800
rosa_multiflora	Rmu_sc0000610.1_g000012
rosa_roxburghii	Rroxscaffold_6G00427610
rosa_rugosa	Rorug02G0622900 Rorug02G0623000 Rorug02G0623100 Rorug02G0623200 Rorug02G0623300
rosa_samantha	Rh3AG021500 Rh3BG022200 Rh3CG020800 Rh3DG021900
rosa_wichuraiana	Rw3G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	979
AciI	CCGC	5 cut(s)	97, 153, 160, 405, 483
AclWI	GGATC	2 cut(s)	393, 685
AcsI	RAATTY	3 cut(s)	466, 837, 1032
AcuI	CTGAAG	2 cut(s)	12, 138
AdeI	CACNNNGTG	1 cut(s)	599
AfaI	GTAC	2 cut(s)	135, 509
AfiI	CCNNNNNNNGG	3 cut(s)	411, 424, 1036
AgsI	TTSAA	4 cut(s)	396, 401, 550, 580
AjuI	GAANNNNNNNTTGG	2 cut(s)	267, 299
AluBI	AGCT	8 cut(s)	430, 553, 626, 702, 811, 833, 999, 1079
AluI	AGCT	8 cut(s)	430, 553, 626, 702, 811, 833, 999, 1079
Alw21I	GWGCWC	4 cut(s)	348, 670, 1001, 1081
Alw26I	GTCTC	3 cut(s)	745, 809, 890
Alw44I	GTGCAC	1 cut(s)	344
AlwI	GGATC	2 cut(s)	393, 685
Ama87I	CYCGRG	1 cut(s)	418
AoxI	GGCC	1 cut(s)	1090
ApaLI	GTGCAC	1 cut(s)	344
ApeKI	GCWGC	5 cut(s)	101, 200, 626, 773, 776
ApoI	RAATTY	3 cut(s)	466, 837, 1032
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	415
AxyI	CCTNAGG	1 cut(s)	736
BaeGI	GKGCMC	1 cut(s)	348
BanII	GRGCYC	3 cut(s)	571, 1001, 1081
Bbv12I	GWGCWC	4 cut(s)	348, 670, 1001, 1081
BbvI	GCAGC	5 cut(s)	88, 212, 613, 760, 763
BccI	CCATC	5 cut(s)	169, 223, 368, 416, 557
BciVI	GTATCC	2 cut(s)	447, 773
BcoDI	GTCTC	3 cut(s)	745, 809, 890
BfaI	CTAG	1 cut(s)	717
BfmI	CTRYAG	1 cut(s)	501
BfuI	GTATCC	2 cut(s)	447, 773
BisI	GCNGC	6 cut(s)	102, 201, 405, 627, 774, 777
BlsI	GCNGC	6 cut(s)	103, 202, 406, 628, 775, 778
Bme18I	GGWCC	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	3 cut(s)	416, 417, 694
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	5 cut(s)	119, 333, 482, 593, 978
BmuI	ACTGGG	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	1107
Bpu10I	CCTNAGC	1 cut(s)	725
BpuEI	CTTGAG	1 cut(s)	833
BsaI	GGTCTC	2 cut(s)	809, 890
BsaJI	CCNNGG	1 cut(s)	534
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	3 cut(s)	411, 424, 1036
Bse1I	ACTGG	2 cut(s)	141, 1090
Bse21I	CCTNAGG	1 cut(s)	736
Bse3DI	GCAATG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	534
BseLI	CCNNNNNNNGG	3 cut(s)	411, 424, 1036
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	739
BseNI	ACTGG	2 cut(s)	141, 1090
BseSI	GKGCMC	1 cut(s)	348
BseXI	GCAGC	5 cut(s)	88, 212, 613, 760, 763
BsgI	GTGCAG	1 cut(s)	963
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	1092
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	4 cut(s)	348, 670, 1001, 1081
BsiHKCI	CYCGRG	1 cut(s)	418
BslFI	GGGAC	3 cut(s)	235, 428, 864
BslI	CCNNNNNNNGG	3 cut(s)	411, 424, 1036
BsmAI	GTCTC	3 cut(s)	745, 809, 890
BsmFI	GGGAC	3 cut(s)	235, 428, 864
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	1092
Bso31I	GGTCTC	2 cut(s)	809, 890
BsoBI	CYCGRG	1 cut(s)	418
Bsp1286I	GDGCHC	5 cut(s)	348, 571, 670, 1001, 1081
Bsp143I	GATC	6 cut(s)	55, 62, 183, 385, 677, 820
BspACI	CCGC	5 cut(s)	97, 153, 160, 405, 483
BspANI	GGCC	1 cut(s)	1092
BspCNI	CTCAG	1 cut(s)	738
BspHI	TCATGA	2 cut(s)	957, 984
BspLI	GGNNCC	3 cut(s)	416, 417, 694
BspMAI	CTGCAG	1 cut(s)	505
BspPI	GGATC	2 cut(s)	393, 685
BspTNI	GGTCTC	2 cut(s)	809, 890
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	141, 1090
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	6 cut(s)	55, 62, 183, 385, 677, 820
BssNAI	GTATAC	1 cut(s)	980
BssT1I	CCWWGG	1 cut(s)	534
Bst1107I	GTATAC	1 cut(s)	980
Bst4CI	ACNGT	5 cut(s)	52, 73, 358, 892, 977
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstC8I	GCNNGC	4 cut(s)	99, 571, 624, 1077
BstDEI	CTNAG	5 cut(s)	163, 711, 725, 736, 872
BstKTI	GATC	6 cut(s)	58, 65, 186, 388, 680, 823
BstMAI	GTCTC	3 cut(s)	745, 809, 890
BstMBI	GATC	6 cut(s)	55, 62, 183, 385, 677, 820
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 590, 785, 1005
BstNSI	RCATGY	1 cut(s)	476
BstSFI	CTRYAG	1 cut(s)	501
BstSLI	GKGCMC	1 cut(s)	348
BstV1I	GCAGC	5 cut(s)	88, 212, 613, 760, 763
BstX2I	RGATCY	2 cut(s)	385, 677
BstYI	RGATCY	2 cut(s)	385, 677
BstZ17I	GTATAC	1 cut(s)	980
Bsu36I	CCTNAGG	1 cut(s)	736
BsuI	GTATCC	2 cut(s)	447, 773
BsuRI	GGCC	1 cut(s)	1092
BtsIMutI	CAGTG	2 cut(s)	69, 247
Cac8I	GCNNGC	4 cut(s)	99, 571, 624, 1077
CciI	TCATGA	2 cut(s)	957, 984
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	134, 508
CviAII	CATG	8 cut(s)	473, 542, 794, 917, 958, 985, 1065, 1094
CviQI	GTAC	2 cut(s)	134, 508
DdeI	CTNAG	5 cut(s)	163, 711, 725, 736, 872
DpnI	GATC	6 cut(s)	57, 64, 185, 387, 679, 822
DpnII	GATC	6 cut(s)	55, 62, 183, 385, 677, 820
DraIII	CACNNNGTG	1 cut(s)	599
Ecl136II	GAGCTC	2 cut(s)	999, 1079
Eco130I	CCWWGG	1 cut(s)	534
Eco24I	GRGCYC	3 cut(s)	571, 1001, 1081
Eco31I	GGTCTC	2 cut(s)	809, 890
Eco47I	GGWCC	1 cut(s)	415
Eco53kI	GAGCTC	2 cut(s)	999, 1079
Eco57I	CTGAAG	2 cut(s)	12, 138
Eco81I	CCTNAGG	1 cut(s)	736
Eco88I	CYCGRG	1 cut(s)	418
EcoICRI	GAGCTC	2 cut(s)	999, 1079
EcoO109I	RGGNCCY	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	586
EcoT38I	GRGCYC	3 cut(s)	571, 1001, 1081
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	8 cut(s)	476, 545, 797, 920, 961, 988, 1068, 1097
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 267, 299
FaqI	GGGAC	3 cut(s)	235, 428, 864
FatI	CATG	8 cut(s)	472, 541, 793, 916, 957, 984, 1064, 1093
FauI	CCCGC	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	979
Fnu4HI	GCNGC	6 cut(s)	102, 201, 405, 627, 774, 777
FriOI	GRGCYC	3 cut(s)	571, 1001, 1081
Fsp4HI	GCNGC	6 cut(s)	102, 201, 405, 627, 774, 777
FspBI	CTAG	1 cut(s)	717
GluI	GCNGC	6 cut(s)	102, 201, 405, 627, 774, 777
GsuI	CTGGAG	1 cut(s)	1107
HaeIII	GGCC	1 cut(s)	1092
Hin1II	CATG	8 cut(s)	476, 545, 797, 920, 961, 988, 1068, 1097
HindIII	AAGCTT	3 cut(s)	551, 700, 809
HinfI	GANTC	3 cut(s)	167, 392, 632
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	346, 510, 980
Hpy188I	TCNGA	6 cut(s)	62, 67, 172, 362, 441, 1083
Hpy188III	TCNNGA	4 cut(s)	389, 727, 958, 985
Hpy8I	GTNNAC	3 cut(s)	346, 510, 980
Hpy99I	CGWCG	2 cut(s)	445, 448
HpyAV	CCTTC	1 cut(s)	714
HpyCH4III	ACNGT	5 cut(s)	52, 73, 358, 892, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 590, 785, 1005
HpyF3I	CTNAG	5 cut(s)	163, 711, 725, 736, 872
Hsp92II	CATG	8 cut(s)	476, 545, 797, 920, 961, 988, 1068, 1097
KflI	GGGWCCC	1 cut(s)	415
Kzo9I	GATC	6 cut(s)	55, 62, 183, 385, 677, 820
LmnI	GCTCC	3 cut(s)	427, 538, 673
Lsp1109I	GCAGC	5 cut(s)	88, 212, 613, 760, 763
LweI	GCATC	5 cut(s)	119, 333, 482, 593, 978
MaeI	CTAG	1 cut(s)	717
MaeIII	GTNAC	3 cut(s)	40, 73, 257
MalI	GATC	6 cut(s)	57, 64, 185, 387, 679, 822
MboI	GATC	6 cut(s)	55, 62, 183, 385, 677, 820
MboII	GAAGA	2 cut(s)	18, 980
MfeI	CAATTG	2 cut(s)	333, 396
MflI	RGATCY	2 cut(s)	385, 677
MhlI	GDGCHC	5 cut(s)	348, 571, 670, 1001, 1081
MluCI	AATT	8 cut(s)	16, 279, 292, 333, 396, 466, 837, 1032
MmeI	TCCRAC	2 cut(s)	464, 655
Mph1103I	ATGCAT	1 cut(s)	586
MroXI	GAANNNNTTC	1 cut(s)	279
MslI	CAYNNNNRTG	4 cut(s)	242, 309, 561, 798
MunI	CAATTG	2 cut(s)	333, 396
Mva1269I	GAATGC	1 cut(s)	155
MwoI	GCNNNNNNNGC	4 cut(s)	107, 590, 785, 1005
NdeII	GATC	6 cut(s)	55, 62, 183, 385, 677, 820
NlaIII	CATG	8 cut(s)	476, 545, 797, 920, 961, 988, 1068, 1097
NlaIV	GGNNCC	3 cut(s)	416, 417, 694
NmuCI	GTSAC	3 cut(s)	40, 73, 257
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	1 cut(s)	476
PagI	TCATGA	2 cut(s)	957, 984
PctI	GAATGC	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	167, 392, 632
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	6 cut(s)	103, 202, 406, 628, 775, 778
PpuMI	RGGWCCY	1 cut(s)	415
Psp124BI	GAGCTC	2 cut(s)	1001, 1081
Psp5II	RGGWCCY	1 cut(s)	415
PspN4I	GGNNCC	3 cut(s)	416, 417, 694
PspPI	GGNCC	1 cut(s)	415
PspPPI	RGGWCCY	1 cut(s)	415
PsrI	GAACNNNNNNTAC	2 cut(s)	963, 995
PstI	CTGCAG	1 cut(s)	505
PsuI	RGATCY	2 cut(s)	385, 677
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	2 cut(s)	135, 509
RsaNI	GTAC	2 cut(s)	134, 508
RseI	CAYNNNNRTG	4 cut(s)	242, 309, 561, 798
SacI	GAGCTC	2 cut(s)	1001, 1081
SatI	GCNGC	6 cut(s)	102, 201, 405, 627, 774, 777
Sau3AI	GATC	6 cut(s)	55, 62, 183, 385, 677, 820
Sau96I	GGNCC	1 cut(s)	415
SduI	GDGCHC	5 cut(s)	348, 571, 670, 1001, 1081
SfaNI	GCATC	5 cut(s)	119, 333, 482, 593, 978
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	4 cut(s)	242, 309, 561, 798
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	8 cut(s)	16, 279, 292, 333, 396, 466, 837, 1032
SsiI	CCGC	5 cut(s)	97, 153, 160, 405, 483
SspI	AATATT	1 cut(s)	937
SspMI	CTAG	1 cut(s)	717
SstI	GAGCTC	2 cut(s)	1001, 1081
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	5 cut(s)	52, 73, 358, 892, 977
TaqI	TCGA	1 cut(s)	54
TaqII	GACCGA	2 cut(s)	531, 833
TasI	AATT	8 cut(s)	16, 279, 292, 333, 396, 466, 837, 1032
TatI	WGTACW	2 cut(s)	133, 507
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	3 cut(s)	167, 392, 632
TscAI	CASTG	2 cut(s)	76, 247
TseFI	GTSAC	3 cut(s)	40, 73, 257
TseI	GCWGC	5 cut(s)	101, 200, 626, 773, 776
Tsp45I	GTSAC	3 cut(s)	40, 73, 257
TspDTI	ATGAA	5 cut(s)	242, 293, 905, 974, 1113
TspRI	CASTG	2 cut(s)	76, 247
Tth111I	GACNNNGTC	1 cut(s)	71
VneI	GTGCAC	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	3 cut(s)	466, 837, 1032
XceI	RCATGY	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	979
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	1 cut(s)	717
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.