Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002085

Physical Location & Seq

Genomic Coordinates Reverse (-)

48196410 .. 48200864

Gene Structure 4455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGTAACTCAAACGGTTGACCTCCGTTCCGACACTGTCACGAAACCAACCGAGACAATGCGGGCAGCCATGGCAGCTGCTGAGGTTGATGATGATGTACTTGGCTATGATCCAACAGCATTCCGCTTGGAAACAGAAATGGCAAAGATCATGGGGAAGGAAGCAGCAGTTTTTGTACCATCAGGCACTATGGGAAACCTCATTAGTGTGCTTGTTCACTGTGACATTAGAGGAAGTGAAGTCATTCTTGGGCATAATTCCCACATTCATATCTATGAGAATGGAGGCATCTCAACAATTGGAGGTGTACATCCAAGAACAGTGAAAAACAACAACGACGGGACAATGGACCTTGATTTAATTGAAGCCACCATTAGGGATCCAAGAGGAGAGCTTGTGTTTCCAACCACGAGACTTATCTGCTTAGAGAACTCACATGCAAACTGCGGTGGTAGATGCTTAACTGTGGAGTACACAGACAGAGTGGGAGAGATAGCCAAGAAGCATGGCTTAAAGCTTCATATTGATGGTGCCCGCATTTTCAATGCATCTGTTGCACTTGGTGTTCCAGTTGATAGACTTGTGCAAGCTGCTGATTCAGTTTCGGTTTGTCTCTCAAAAGGTATTGGTGCTCCTGTTGGATCTGTCATTGTTGGATCCGAAAGCTTCATTACTAAGGCTAGAAGACTCAGGAAAACTTTAGGTGGTGGAATGAGACAGGTCGGCATCCTTTGTGCGGGTGCTTTGGTGGCTTTACATGAAAATGTTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGACTTTAGCAGAGGGACTAAATCAAATCAAAGGATTAAGGGTAGATACTGAGATGGTTGAGACAAATATTCTGTATGTTCATATTCTTGAGGGATCAACAATCACCACAGAAAAGTTGTATAAGAAATTGGAAGAATATGGTATACTTACGATGAAAGAAAGCTCACCAAGCATTAGGATTGTTCTCCACCACCAAATTTCAGCAAGTGATGTGCAGTTCACTTTGTCCTGCTTTCAGAAAGCTCTGACCGGAGCCCCTGAAGAAAATGGACACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

359

Amino Acids

38.69

Weight (kDa)

6.28

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta_elim_lyase	PF01212	7 - 294	3.6e-108	Beta-eliminating lyase
Aminotran_1_2	PF00155	18 - 329	1.7e-10	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT3G04520 AT3G04520 AT3G04520
fragaria_vesca	FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941
malus_domestica	MD12G1246700.v1.1
prunus_persica	Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1
pyrus_communis	pycom12g22610
rosa_chinensis	RchiOBHm_Chr3g0449781
rosa_laevigata	RLG00000025800
rosa_multiflora	Rmu_sc0000610.1_g000012
rosa_roxburghii	Rroxscaffold_6G00427610
rosa_rugosa	Rorug02G0622900 Rorug02G0623000 Rorug02G0623100 Rorug02G0623200 Rorug02G0623300
rosa_samantha	Rh3AG021500 Rh3BG022200 Rh3CG020800 Rh3DG021900
rosa_wichuraiana	Rw3G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	530
AccI	GTMKAC	1 cut(s)	943
AciI	CCGC	5 cut(s)	61, 124, 447, 535, 737
AclWI	GGATC	7 cut(s)	104, 374, 387, 649, 651, 664, 901
AcsI	RAATTY	1 cut(s)	996
AcuI	CTGAAG	1 cut(s)	1080
AdeI	CACNNNGTG	1 cut(s)	563
AfaI	GTAC	4 cut(s)	99, 177, 309, 473
AfiI	CCNNNNNNNGG	2 cut(s)	375, 736
AgsI	TTSAA	2 cut(s)	365, 544
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	9 cut(s)	77, 394, 517, 590, 666, 775, 797, 963, 1043
AluI	AGCT	9 cut(s)	77, 394, 517, 590, 666, 775, 797, 963, 1043
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	5 cut(s)	47, 406, 617, 709, 854
AlwI	GGATC	7 cut(s)	104, 374, 387, 649, 651, 664, 901
AlwNI	CAGNNNCTG	1 cut(s)	80
ApeKI	GCWGC	5 cut(s)	65, 74, 77, 164, 590
ApoI	RAATTY	1 cut(s)	996
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	3 cut(s)	794, 895, 957
AvaII	GGWCC	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	535
BamHI	GGATCC	2 cut(s)	379, 656
BanI	GGYRCC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	1057
BauI	CACGAG	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	691
Bbv12I	GWGCWC	1 cut(s)	634
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	5 cut(s)	64, 77, 86, 176, 577
BccI	CCATC	3 cut(s)	187, 521, 847
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	5 cut(s)	47, 406, 617, 709, 854
BfaI	CTAG	1 cut(s)	681
BisI	GCNGC	5 cut(s)	66, 75, 78, 165, 591
BlsI	GCNGC	5 cut(s)	67, 76, 79, 166, 592
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	4 cut(s)	381, 532, 658, 1054
BmsI	GCATC	4 cut(s)	297, 446, 557, 735
BpiI	GAAGAC	1 cut(s)	691
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	797, 908
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	1049
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 736
Bse1I	ACTGG	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	2 cut(s)	310, 726
BseLI	CCNNNNNNNGG	2 cut(s)	375, 736
BseMII	CTCAG	3 cut(s)	72, 703, 840
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	1 cut(s)	402
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	5 cut(s)	64, 77, 86, 176, 577
BsgI	GTGCAG	1 cut(s)	1034
BshNI	GGYRCC	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	634
BsiSI	CCGG	1 cut(s)	1050
BslFI	GGGAC	2 cut(s)	355, 828
BslI	CCNNNNNNNGG	2 cut(s)	375, 736
BsmAI	GTCTC	5 cut(s)	47, 406, 617, 709, 854
BsmFI	GGGAC	2 cut(s)	355, 828
BsmI	GAATGC	1 cut(s)	119
Bsp1286I	GDGCHC	3 cut(s)	535, 634, 1057
Bsp1407I	TGTACA	1 cut(s)	307
Bsp143I	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	5 cut(s)	61, 124, 447, 535, 737
BspCNI	CTCAG	3 cut(s)	73, 702, 841
BspLI	GGNNCC	4 cut(s)	381, 532, 658, 1054
BspPI	GGATC	7 cut(s)	104, 374, 387, 649, 651, 664, 901
BspT107I	GGYRCC	1 cut(s)	530
BsrGI	TGTACA	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
BssNAI	GTATAC	1 cut(s)	944
BssSI	CACGAG	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	69
Bst1107I	GTATAC	1 cut(s)	944
Bst2BI	CACGAG	1 cut(s)	409
Bst4CI	ACNGT	5 cut(s)	16, 37, 221, 322, 466
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstAUI	TGTACA	1 cut(s)	307
BstC8I	GCNNGC	3 cut(s)	63, 535, 588
BstDEI	CTNAG	6 cut(s)	81, 424, 675, 689, 798, 849
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	310, 726
BstKTI	GATC	7 cut(s)	112, 150, 382, 644, 659, 787, 896
BstMAI	GTCTC	5 cut(s)	47, 406, 617, 709, 854
BstMBI	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 74, 554, 749, 969
BstNSI	RCATGY	1 cut(s)	440
BstSLI	GKGCMC	1 cut(s)	535
BstV1I	GCAGC	5 cut(s)	64, 77, 86, 176, 577
BstV2I	GAAGAC	1 cut(s)	691
BstX2I	RGATCY	3 cut(s)	379, 641, 656
BstYI	RGATCY	3 cut(s)	379, 641, 656
BstZ17I	GTATAC	1 cut(s)	944
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	310, 726
BtsIMutI	CAGTG	3 cut(s)	33, 217, 327
Cac8I	GCNNGC	3 cut(s)	63, 535, 588
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	349
Csp6I	GTAC	4 cut(s)	98, 176, 308, 472
CviAII	CATG	5 cut(s)	70, 151, 437, 506, 758
CviQI	GTAC	4 cut(s)	98, 176, 308, 472
DdeI	CTNAG	6 cut(s)	81, 424, 675, 689, 798, 849
DpnI	GATC	7 cut(s)	111, 149, 381, 643, 658, 786, 895
DpnII	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
DraIII	CACNNNGTG	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	1057
Eco47I	GGWCC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	1080
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	1057
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	5 cut(s)	73, 154, 440, 509, 761
FalI	AAGNNNNNCTT	4 cut(s)	231, 263, 494, 526
FaqI	GGGAC	2 cut(s)	355, 828
FatI	CATG	5 cut(s)	69, 150, 436, 505, 757
FauI	CCCGC	3 cut(s)	54, 542, 730
FbaI	TGATCA	1 cut(s)	784
FblI	GTMKAC	1 cut(s)	943
Fnu4HI	GCNGC	5 cut(s)	66, 75, 78, 165, 591
FokI	GGATG	2 cut(s)	297, 713
FriOI	GRGCYC	1 cut(s)	1057
Fsp4HI	GCNGC	5 cut(s)	66, 75, 78, 165, 591
FspBI	CTAG	1 cut(s)	681
GluI	GCNGC	5 cut(s)	66, 75, 78, 165, 591
HapII	CCGG	1 cut(s)	1050
Hin1II	CATG	5 cut(s)	73, 154, 440, 509, 761
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	3 cut(s)	515, 664, 773
HinfI	GANTC	2 cut(s)	596, 687
HpaII	CCGG	1 cut(s)	1050
HphI	GGTGA	3 cut(s)	794, 895, 957
Hpy166II	GTNNAC	6 cut(s)	19, 217, 308, 474, 944, 1020
Hpy188I	TCNGA	4 cut(s)	31, 661, 1038, 1047
Hpy188III	TCNNGA	3 cut(s)	40, 691, 887
Hpy8I	GTNNAC	6 cut(s)	19, 217, 308, 474, 944, 1020
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	5 cut(s)	16, 37, 221, 322, 466
HpyCH4V	TGCA	6 cut(s)	440, 548, 557, 586, 770, 1015
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 74, 554, 749, 969
HpyF3I	CTNAG	6 cut(s)	81, 424, 675, 689, 798, 849
Hsp92II	CATG	5 cut(s)	73, 154, 440, 509, 761
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
LmnI	GCTCC	2 cut(s)	637, 1052
LpnPI	CCDG	8 cut(s)	168, 582, 648, 676, 704, 1042, 1063, 1071
Lsp1109I	GCAGC	5 cut(s)	64, 77, 86, 176, 577
LweI	GCATC	4 cut(s)	297, 446, 557, 735
MaeI	CTAG	1 cut(s)	681
MaeIII	GTNAC	3 cut(s)	4, 37, 221
MalI	GATC	7 cut(s)	111, 149, 381, 643, 658, 786, 895
MboI	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
MboII	GAAGA	3 cut(s)	696, 944, 1073
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	3 cut(s)	379, 641, 656
MhlI	GDGCHC	3 cut(s)	535, 634, 1057
MluCI	AATT	5 cut(s)	256, 297, 360, 926, 996
MlyI	GAGTC	1 cut(s)	681
MmeI	TCCRAC	5 cut(s)	54, 137, 428, 619, 634
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	4 cut(s)	359, 461, 512, 836
MslI	CAYNNNNRTG	4 cut(s)	206, 273, 525, 762
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	1050
MunI	CAATTG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	119
MwoI	GCNNNNNNNGC	5 cut(s)	71, 74, 554, 749, 969
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
NlaIII	CATG	5 cut(s)	73, 154, 440, 509, 761
NlaIV	GGNNCC	4 cut(s)	381, 532, 658, 1054
NmuCI	GTSAC	2 cut(s)	37, 221
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	440
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	596
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	5 cut(s)	67, 76, 79, 166, 592
PleI	GAGTC	1 cut(s)	681
PpsI	GAGTC	1 cut(s)	681
PspN4I	GGNNCC	4 cut(s)	381, 532, 658, 1054
PspPI	GGNCC	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	3 cut(s)	379, 641, 656
PsyI	GACNNNGTC	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	4 cut(s)	99, 177, 309, 473
RsaNI	GTAC	4 cut(s)	98, 176, 308, 472
RseI	CAYNNNNRTG	4 cut(s)	206, 273, 525, 762
SaqAI	TTAA	4 cut(s)	359, 461, 512, 836
SatI	GCNGC	5 cut(s)	66, 75, 78, 165, 591
Sau3AI	GATC	7 cut(s)	109, 147, 379, 641, 656, 784, 893
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	1 cut(s)	681
SduI	GDGCHC	3 cut(s)	535, 634, 1057
SfaNI	GCATC	4 cut(s)	297, 446, 557, 735
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	4 cut(s)	206, 273, 525, 762
SmlI	CTYRAG	2 cut(s)	776, 887
SmoI	CTYRAG	2 cut(s)	776, 887
Sse9I	AATT	5 cut(s)	256, 297, 360, 926, 996
SsiI	CCGC	5 cut(s)	61, 124, 447, 535, 737
SspI	AATATT	1 cut(s)	868
SspMI	CTAG	1 cut(s)	681
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	5 cut(s)	16, 37, 221, 322, 466
TasI	AATT	5 cut(s)	256, 297, 360, 926, 996
TatI	WGTACW	3 cut(s)	97, 307, 471
TfiI	GAWTC	1 cut(s)	596
Tru1I	TTAA	4 cut(s)	359, 461, 512, 836
Tru9I	TTAA	4 cut(s)	359, 461, 512, 836
TscAI	CASTG	3 cut(s)	40, 224, 327
TseFI	GTSAC	2 cut(s)	37, 221
TseI	GCWGC	5 cut(s)	65, 74, 77, 164, 590
Tsp45I	GTSAC	2 cut(s)	37, 221
TspDTI	ATGAA	6 cut(s)	257, 509, 658, 774, 869, 968
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	3 cut(s)	40, 224, 327
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	996
XceI	RCATGY	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	943
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	1 cut(s)	681
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.