Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002085

Physical Location & Seq

Genomic Coordinates Reverse (-)

73946011 .. 73946616

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0622900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAAAGATGAACACTCCCCTGAAAAAGTTCCACTAAAACAAGCTGTCCCTGCTCATCTCTTTGCTTTACCAGATGATGAAAATAGAAAAGCTACAGAATTCAGACCATTCTCAATGGCATCACCTCACATGCGAGCCTTCCACCTCGCATGGTTCACCTTCTCCATTCCTCCACTCCTCGCCGTCATCAGCGACGATCTCCACCTCACCGAAACCGACACCTCACGCGCCGCCATCGCAGCCTTCATCGGCTCCATCTTCTCCCGCATTGCCATGGGCCCCGTCTGCGACCACCTCGGCCCACGCATCGCCTCCGCCACCCTCTCCCTCCTCACCTCCCCTATCACCCTCTCCCTCGTCTCCTCCCCAAACGCCTTTATCACTATCCGCTTCCTCTTCGGCTTCTCGCTCGCCAACTTCGTCACCAACCAGTTCTGGATGAGCCGCATGTTCTCCGGCTGCGTCATCGGCCTCGCCAACGGCGTCTCCGCCTGCTGGGCCAACACGGGCTCCGGCGCCACCCAGCTCGTCATGCTACTCATCTACTCCTTCATCATGTCAGCATTCAACTTGCCATCCTTCACTGCCTGCGACTGTCATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

201

Amino Acids

21.92

Weight (kDa)

6.63

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	51 - 184	1.3e-08	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT3G04520 AT3G04520 AT3G04520
fragaria_vesca	FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941
malus_domestica	MD12G1246700.v1.1
prunus_persica	Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1
pyrus_communis	pycom12g22610
rosa_chinensis	RchiOBHm_Chr3g0449781
rosa_laevigata	RLG00000025800
rosa_multiflora	Rmu_sc0000610.1_g000012
rosa_roxburghii	Rroxscaffold_6G00427610
rosa_rugosa	Rorug02G0622900 Rorug02G0623000 Rorug02G0623100 Rorug02G0623200 Rorug02G0623300
rosa_samantha	Rh3AG021500 Rh3BG022200 Rh3CG020800 Rh3DG021900
rosa_wichuraiana	Rw3G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	515
AccII	CGCG	1 cut(s)	228
AciI	CCGC	6 cut(s)	231, 265, 315, 388, 445, 489
AcsI	RAATTY	1 cut(s)	98
AcyI	GRCGYC	2 cut(s)	483, 516
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgsI	TTSAA	1 cut(s)	568
AluBI	AGCT	3 cut(s)	44, 92, 526
AluI	AGCT	3 cut(s)	44, 92, 526
Alw26I	GTCTC	2 cut(s)	364, 490
AoxI	GGCC	4 cut(s)	277, 298, 469, 498
ApaI	GGGCCC	1 cut(s)	281
ApeKI	GCWGC	2 cut(s)	239, 459
ApoI	RAATTY	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	2 cut(s)	230, 518
AspS9I	GGNCC	4 cut(s)	277, 278, 299, 498
AsuHPI	GGTGA	6 cut(s)	114, 148, 199, 325, 337, 415
BaeGI	GKGCMC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	515
BanII	GRGCYC	2 cut(s)	281, 512
BbvI	GCAGC	2 cut(s)	251, 446
BccI	CCATC	3 cut(s)	242, 263, 583
BceAI	ACGGC	2 cut(s)	167, 496
BcoDI	GTCTC	2 cut(s)	364, 490
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	519
BglI	GCCNNNNNGGC	1 cut(s)	497
BisI	GCNGC	4 cut(s)	231, 240, 445, 460
BlsI	GCNGC	4 cut(s)	232, 241, 446, 461
BmgT120I	GGNCC	4 cut(s)	277, 278, 299, 498
BmiI	GGNNCC	5 cut(s)	253, 279, 280, 511, 517
BmsI	GCATC	2 cut(s)	128, 315
BsaHI	GRCGYC	2 cut(s)	483, 516
BsaJI	CCNNGG	2 cut(s)	273, 295
BsaXI	ACNNNNNCTCC	4 cut(s)	470, 494, 500, 524
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse1I	ACTGG	1 cut(s)	430
Bse3DI	GCAATG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	273, 295
BseGI	GGATG	2 cut(s)	444, 575
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMI	GCAATG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	3 cut(s)	167, 320, 352
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	251, 446
BseYI	CCCAGC	2 cut(s)	495, 522
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	4 cut(s)	279, 300, 471, 500
BshNI	GGYRCC	1 cut(s)	515
BsiSI	CCGG	2 cut(s)	456, 513
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmAI	GTCTC	2 cut(s)	364, 490
BsmBI	CGTCTC	2 cut(s)	364, 490
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	563
BsnI	GGCC	4 cut(s)	279, 300, 471, 500
Bsp120I	GGGCCC	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	281, 512
Bsp143I	GATC	1 cut(s)	196
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	6 cut(s)	231, 265, 315, 388, 445, 489
BspANI	GGCC	4 cut(s)	279, 300, 471, 500
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	5 cut(s)	253, 279, 280, 511, 517
BspT107I	GGYRCC	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	273, 295
BssMI	GATC	1 cut(s)	196
BssNI	GRCGYC	2 cut(s)	483, 516
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	596
Bst6I	CTCTTC	1 cut(s)	401
BstACI	GRCGYC	2 cut(s)	483, 516
BstC8I	GCNNGC	4 cut(s)	135, 411, 493, 589
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	444, 575
BstFNI	CGCG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	519
BstHHI	GCGC	2 cut(s)	230, 518
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	2 cut(s)	364, 490
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 236, 239, 285, 468, 497, 532
BstNSI	RCATGY	2 cut(s)	133, 451
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	251, 446
BsuRI	GGCC	4 cut(s)	279, 300, 471, 500
BtgI	CCRYGG	1 cut(s)	273
BtgZI	GCGATG	2 cut(s)	220, 292
BtsCI	GGATG	2 cut(s)	444, 575
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	1 cut(s)	582
Cac8I	GCNNGC	4 cut(s)	135, 411, 493, 589
CfoI	GCGC	2 cut(s)	230, 518
Cfr13I	GGNCC	4 cut(s)	277, 278, 299, 498
CseI	GACGC	2 cut(s)	451, 472
CviAII	CATG	6 cut(s)	130, 150, 274, 448, 532, 556
DinI	GGCGCC	1 cut(s)	517
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
EciI	GGCGGA	2 cut(s)	304, 478
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	2 cut(s)	281, 512
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	2 cut(s)	281, 512
EgeI	GGCGCC	1 cut(s)	517
EheI	GGCGCC	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	273
Esp3I	CGTCTC	2 cut(s)	364, 490
FaeI	CATG	6 cut(s)	133, 153, 277, 451, 535, 559
FaiI	YATR	9 cut(s)	131, 151, 275, 449, 533, 557, 600, 602, 604
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	6 cut(s)	129, 149, 273, 447, 531, 555
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	4 cut(s)	231, 240, 445, 460
FokI	GGATG	2 cut(s)	451, 562
FriOI	GRGCYC	2 cut(s)	281, 512
Fsp4HI	GCNGC	4 cut(s)	231, 240, 445, 460
GlaI	GCGC	2 cut(s)	229, 517
GluI	GCNGC	4 cut(s)	231, 240, 445, 460
GsaI	CCCAGC	2 cut(s)	499, 526
HaeII	RGCGCY	1 cut(s)	519
HaeIII	GGCC	4 cut(s)	279, 300, 471, 500
HapII	CCGG	2 cut(s)	456, 513
HgaI	GACGC	2 cut(s)	451, 472
HhaI	GCGC	2 cut(s)	230, 518
Hin1I	GRCGYC	2 cut(s)	483, 516
Hin1II	CATG	6 cut(s)	133, 153, 277, 451, 535, 559
Hin6I	GCGC	2 cut(s)	228, 516
HinP1I	GCGC	2 cut(s)	228, 516
HpaII	CCGG	2 cut(s)	456, 513
HphI	GGTGA	6 cut(s)	114, 148, 199, 325, 337, 415
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	1 cut(s)	436
Hpy8I	GTNNAC	1 cut(s)	156
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	5 cut(s)	148, 169, 253, 559, 589
HpyCH4III	ACNGT	1 cut(s)	596
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 236, 239, 285, 468, 497, 532
Hsp92I	GRCGYC	2 cut(s)	483, 516
Hsp92II	CATG	6 cut(s)	133, 153, 277, 451, 535, 559
HspAI	GCGC	2 cut(s)	228, 516
KasI	GGCGCC	1 cut(s)	515
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	2 cut(s)	257, 515
Lsp1109I	GCAGC	2 cut(s)	251, 446
LweI	GCATC	2 cut(s)	128, 315
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	250, 388
MhlI	GDGCHC	2 cut(s)	281, 512
MluCI	AATT	1 cut(s)	98
Mly113I	GGCGCC	1 cut(s)	516
MroXI	GAANNNNTTC	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	272
MspI	CCGG	2 cut(s)	456, 513
Mva1269I	GAATGC	1 cut(s)	563
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	7 cut(s)	50, 236, 239, 285, 468, 497, 532
NarI	GGCGCC	1 cut(s)	516
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	6 cut(s)	133, 153, 277, 451, 535, 559
NlaIV	GGNNCC	5 cut(s)	253, 279, 280, 511, 517
NmeAIII	GCCGAG	1 cut(s)	276
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	2 cut(s)	133, 451
PcsI	WCGNNNNNNNCGW	2 cut(s)	417, 480
PctI	GAATGC	1 cut(s)	563
PdmI	GAANNNNTTC	1 cut(s)	27
PkrI	GCNGC	4 cut(s)	232, 241, 446, 461
PluTI	GGCGCC	1 cut(s)	519
PspFI	CCCAGC	2 cut(s)	495, 522
PspN4I	GGNNCC	5 cut(s)	253, 279, 280, 511, 517
PspOMI	GGGCCC	1 cut(s)	277
PspPI	GGNCC	4 cut(s)	277, 278, 299, 498
RseI	CAYNNNNRTG	1 cut(s)	272
SatI	GCNGC	4 cut(s)	231, 240, 445, 460
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	4 cut(s)	277, 278, 299, 498
SduI	GDGCHC	2 cut(s)	281, 512
SfaNI	GCATC	2 cut(s)	128, 315
SfcI	CTRYAG	1 cut(s)	93
SfoI	GGCGCC	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	272
Sse9I	AATT	1 cut(s)	98
SsiI	CCGC	6 cut(s)	231, 265, 315, 388, 445, 489
SspDI	GGCGCC	1 cut(s)	515
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	596
TasI	AATT	1 cut(s)	98
TauI	GCSGC	2 cut(s)	233, 447
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	2 cut(s)	239, 459
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	5 cut(s)	17, 24, 93, 235, 541
TspRI	CASTG	1 cut(s)	589
XapI	RAATTY	1 cut(s)	98
XceI	RCATGY	2 cut(s)	133, 451
XmnI	GAANNNNTTC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.