Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002085

Physical Location & Seq

Genomic Coordinates Reverse (-)

1507973 .. 1513476

Gene Structure 5504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G001760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGTTGCGGAAAGGCAATTCTTTTCTTGTTCAGCAAATATGGTAACTCAAACGGTTGACCTCCGTTCCGACACTGTCACGAAACCAACCGAGACAATGCGGGCAGCCATGGCAGCTGCTGAGGTTGATGATGATGTACTTGGCTATGATCCAACAGCATTCCGCTTGGAAACAGAAATGGCAAAGATCATGGGGAAGGAAGCAGCAGTTTTTGTACCATCAGGCACTATGGGAAACCTCATTAGTGTGCTTGTTCACTGTGACATTAGAGGAAGTGAAGTCATTCTTGGGCATAATTCCCACATTCATATCTATGAGAATGGAGGCATCTCAACAATTGGAGGTGTACATCCAAGAACAGTGAAAAACAACAACGACGGGACAATGGACCTTGATTTAATTGAATCCGCCATTAGGGATCCAAGAGGAGAGCTTGTGTTTCCAACCACGAGACTTATCTGCTTAGAGAACTCACATGCAAACTGCGGTGGTAGATGCTTAACTGTGGAGTACACAGACAGAGTGGGAGAGATAGCCAAGAAGCATGACTTAAAGCTTCATATTGATGGTGCCCGCATTTTCAATGCATCTGTTGCACTTGGTGTTCCAGTTGATAGACTTGTGCAAGCTGCTGATTCAGTTTCGGTTTGTCTCTCAAAAGGTATTGGTGCTCCTGTTGGATCTGTCATTGTTGGATCCGAAAGCTTCATTACTAAGGCTAGAAGGCTCAGGAAAACTTTAGGTGGTGGAATGAGACAGGTCGGCATCCTTTGTGCAGGTGCTTTGGTGGCTTTACATGAAAATGTTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGACTTTAGCAGAGGGACTAAATCAAATCAAAGGATTAAGGGTGGATACTGAGACGGTTGAGACAAATATTCTGTACGTTCATATTCTTGAGGGATCAACAATCACCACAGAAAAGTTGTATAAGAAATTGGAAGAATATGGTATACTTACGATGAAAGAAAGCTCATCAAGCATTAGGATTGTTCTCCACCACCAAATTTCAGCAAGTGATGTGCAGTACACTGTGTCCTGCTTTCAGCCTGTACTGTGGACATGCGGTCAGACACCGTCACACAGCCAGCTGAAGCTTGCGAGCTGCCATGGCAGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

383

Amino Acids

41.35

Weight (kDa)

6.43

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta_elim_lyase	PF01212	20 - 307	2.7e-108	Beta-eliminating lyase
Aminotran_1_2	PF00155	30 - 345	1.8e-10	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT3G04520 AT3G04520 AT3G04520
fragaria_vesca	FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941
malus_domestica	MD12G1246700.v1.1
prunus_persica	Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1
pyrus_communis	pycom12g22610
rosa_chinensis	RchiOBHm_Chr3g0449781
rosa_laevigata	RLG00000025800
rosa_multiflora	Rmu_sc0000610.1_g000012
rosa_roxburghii	Rroxscaffold_6G00427610
rosa_rugosa	Rorug02G0622900 Rorug02G0623000 Rorug02G0623100 Rorug02G0623200 Rorug02G0623300
rosa_samantha	Rh3AG021500 Rh3BG022200 Rh3CG020800 Rh3DG021900
rosa_wichuraiana	Rw3G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	767
Acc36I	ACCTGC	1 cut(s)	767
AccB1I	GGYRCC	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	982
AciI	CCGC	7 cut(s)	8, 100, 163, 408, 486, 574, 1095
AclWI	GGATC	7 cut(s)	143, 413, 426, 688, 690, 703, 940
AcsI	RAATTY	1 cut(s)	1035
AcuI	CTGAAG	1 cut(s)	1142
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	7 cut(s)	138, 216, 348, 512, 914, 1058, 1083
AfiI	CCNNNNNNNGG	1 cut(s)	414
AgsI	TTSAA	2 cut(s)	404, 583
AhdI	GACNNNNNGTC	1 cut(s)	1095
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
Alw21I	GWGCWC	1 cut(s)	673
Alw26I	GTCTC	6 cut(s)	86, 445, 656, 748, 884, 893
AlwI	GGATC	7 cut(s)	143, 413, 426, 688, 690, 703, 940
AlwNI	CAGNNNCTG	2 cut(s)	119, 1149
ApeKI	GCWGC	8 cut(s)	104, 113, 116, 203, 629, 1134, 1143, 1146
ApoI	RAATTY	1 cut(s)	1035
Asp700I	GAANNNNTTC	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	388
AsuHPI	GGTGA	2 cut(s)	833, 934
AvaII	GGWCC	1 cut(s)	388
BaeGI	GKGCMC	1 cut(s)	574
BamHI	GGATCC	2 cut(s)	418, 695
BanI	GGYRCC	1 cut(s)	569
BauI	CACGAG	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	673
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	7 cut(s)	103, 116, 125, 215, 616, 1121, 1133
BccI	CCATC	2 cut(s)	226, 560
BciVI	GTATCC	1 cut(s)	877
BclI	TGATCA	1 cut(s)	823
BcoDI	GTCTC	6 cut(s)	86, 445, 656, 748, 884, 893
BfaI	CTAG	1 cut(s)	720
BfuAI	ACCTGC	1 cut(s)	767
BfuI	GTATCC	1 cut(s)	877
BisI	GCNGC	8 cut(s)	105, 114, 117, 204, 630, 1135, 1144, 1147
BlsI	GCNGC	8 cut(s)	106, 115, 118, 205, 631, 1136, 1145, 1148
Bme18I	GGWCC	1 cut(s)	388
BmeRI	GACNNNNNGTC	1 cut(s)	1095
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	3 cut(s)	420, 571, 697
BmsI	GCATC	4 cut(s)	336, 485, 596, 774
Bpu10I	CCTNAGC	2 cut(s)	120, 728
BpuEI	CTTGAG	2 cut(s)	836, 947
BsaJI	CCNNGG	2 cut(s)	108, 1138
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse1I	ACTGG	1 cut(s)	608
BseDI	CCNNGG	2 cut(s)	108, 1138
BseGI	GGATG	2 cut(s)	349, 765
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseMII	CTCAG	3 cut(s)	111, 742, 879
BseNI	ACTGG	1 cut(s)	608
BseRI	GAGGAG	1 cut(s)	441
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	7 cut(s)	103, 116, 125, 215, 616, 1121, 1133
BsgI	GTGCAG	2 cut(s)	795, 1073
BshNI	GGYRCC	1 cut(s)	569
BsiHKAI	GWGCWC	1 cut(s)	673
BslFI	GGGAC	2 cut(s)	394, 867
BslI	CCNNNNNNNGG	1 cut(s)	414
BsmAI	GTCTC	6 cut(s)	86, 445, 656, 748, 884, 893
BsmBI	CGTCTC	1 cut(s)	884
BsmFI	GGGAC	2 cut(s)	394, 867
BsmI	GAATGC	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	574, 673
Bsp1407I	TGTACA	1 cut(s)	346
Bsp143I	GATC	7 cut(s)	148, 186, 418, 680, 695, 823, 932
Bsp19I	CCATGG	2 cut(s)	108, 1138
BspACI	CCGC	7 cut(s)	8, 100, 163, 408, 486, 574, 1095
BspCNI	CTCAG	3 cut(s)	112, 741, 880
BspLI	GGNNCC	3 cut(s)	420, 571, 697
BspMI	ACCTGC	1 cut(s)	767
BspPI	GGATC	7 cut(s)	143, 413, 426, 688, 690, 703, 940
BspT107I	GGYRCC	1 cut(s)	569
BsrGI	TGTACA	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	608
BssECI	CCNNGG	2 cut(s)	108, 1138
BssMI	GATC	7 cut(s)	148, 186, 418, 680, 695, 823, 932
BssNAI	GTATAC	1 cut(s)	983
BssSI	CACGAG	1 cut(s)	448
BssT1I	CCWWGG	2 cut(s)	108, 1138
Bst1107I	GTATAC	1 cut(s)	983
Bst2BI	CACGAG	1 cut(s)	448
Bst4CI	ACNGT	9 cut(s)	55, 76, 260, 361, 505, 895, 1063, 1086, 1107
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstAUI	TGTACA	1 cut(s)	346
BstC8I	GCNNGC	6 cut(s)	102, 574, 627, 1118, 1128, 1132
BstDEI	CTNAG	6 cut(s)	120, 463, 714, 728, 837, 888
BstDSI	CCRYGG	2 cut(s)	108, 1138
BstF5I	GGATG	2 cut(s)	349, 765
BstKTI	GATC	7 cut(s)	151, 189, 421, 683, 698, 826, 935
BstMAI	GTCTC	6 cut(s)	86, 445, 656, 748, 884, 893
BstMBI	GATC	7 cut(s)	148, 186, 418, 680, 695, 823, 932
BstMWI	GCNNNNNNNGC	7 cut(s)	110, 113, 593, 788, 1008, 1140, 1143
BstNSI	RCATGY	2 cut(s)	479, 1095
BstSLI	GKGCMC	1 cut(s)	574
BstV1I	GCAGC	7 cut(s)	103, 116, 125, 215, 616, 1121, 1133
BstX2I	RGATCY	3 cut(s)	418, 680, 695
BstYI	RGATCY	3 cut(s)	418, 680, 695
BstZ17I	GTATAC	1 cut(s)	983
BsuI	GTATCC	1 cut(s)	877
BtgI	CCRYGG	2 cut(s)	108, 1138
BtsCI	GGATG	2 cut(s)	349, 765
BtsIMutI	CAGTG	4 cut(s)	72, 256, 366, 1059
BveI	ACCTGC	1 cut(s)	767
Cac8I	GCNNGC	6 cut(s)	102, 574, 627, 1118, 1128, 1132
CaiI	CAGNNNCTG	2 cut(s)	119, 1149
Cfr13I	GGNCC	1 cut(s)	388
Csp6I	GTAC	7 cut(s)	137, 215, 347, 511, 913, 1057, 1082
CviAII	CATG	7 cut(s)	109, 190, 476, 545, 797, 1092, 1139
CviQI	GTAC	7 cut(s)	137, 215, 347, 511, 913, 1057, 1082
DdeI	CTNAG	6 cut(s)	120, 463, 714, 728, 837, 888
DpnI	GATC	7 cut(s)	150, 188, 420, 682, 697, 825, 934
DpnII	GATC	7 cut(s)	148, 186, 418, 680, 695, 823, 932
DraIII	CACNNNGTG	1 cut(s)	602
DriI	GACNNNNNGTC	1 cut(s)	1095
Eam1105I	GACNNNNNGTC	1 cut(s)	1095
EciI	GGCGGA	1 cut(s)	397
Eco130I	CCWWGG	2 cut(s)	108, 1138
Eco47I	GGWCC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	1142
EcoT14I	CCWWGG	2 cut(s)	108, 1138
EcoT22I	ATGCAT	1 cut(s)	589
ErhI	CCWWGG	2 cut(s)	108, 1138
Esp3I	CGTCTC	1 cut(s)	884
FaeI	CATG	7 cut(s)	112, 193, 479, 548, 800, 1095, 1142
FalI	AAGNNNNNCTT	4 cut(s)	270, 302, 533, 565
FaqI	GGGAC	2 cut(s)	394, 867
FatI	CATG	7 cut(s)	108, 189, 475, 544, 796, 1091, 1138
FauI	CCCGC	2 cut(s)	93, 581
FbaI	TGATCA	1 cut(s)	823
FblI	GTMKAC	1 cut(s)	982
Fnu4HI	GCNGC	8 cut(s)	105, 114, 117, 204, 630, 1135, 1144, 1147
FokI	GGATG	2 cut(s)	336, 752
Fsp4HI	GCNGC	8 cut(s)	105, 114, 117, 204, 630, 1135, 1144, 1147
FspBI	CTAG	1 cut(s)	720
GluI	GCNGC	8 cut(s)	105, 114, 117, 204, 630, 1135, 1144, 1147
Hin1II	CATG	7 cut(s)	112, 193, 479, 548, 800, 1095, 1142
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HindIII	AAGCTT	4 cut(s)	554, 703, 812, 1124
HinfI	GANTC	2 cut(s)	404, 635
HphI	GGTGA	2 cut(s)	833, 934
Hpy166II	GTNNAC	7 cut(s)	58, 256, 347, 513, 983, 1059, 1089
Hpy188I	TCNGA	3 cut(s)	70, 700, 1101
Hpy188III	TCNNGA	3 cut(s)	79, 730, 926
Hpy8I	GTNNAC	7 cut(s)	58, 256, 347, 513, 983, 1059, 1089
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	2 cut(s)	190, 717
HpyCH4III	ACNGT	9 cut(s)	55, 76, 260, 361, 505, 895, 1063, 1086, 1107
HpyCH4IV	ACGT	1 cut(s)	915
HpyCH4V	TGCA	7 cut(s)	479, 587, 596, 625, 776, 809, 1054
HpyF10VI	GCNNNNNNNGC	7 cut(s)	110, 113, 593, 788, 1008, 1140, 1143
HpyF3I	CTNAG	6 cut(s)	120, 463, 714, 728, 837, 888
HpySE526I	ACGT	1 cut(s)	915
Hsp92II	CATG	7 cut(s)	112, 193, 479, 548, 800, 1095, 1142
Ksp22I	TGATCA	1 cut(s)	823
Kzo9I	GATC	7 cut(s)	148, 186, 418, 680, 695, 823, 932
LmnI	GCTCC	1 cut(s)	676
LpnPI	CCDG	9 cut(s)	207, 621, 687, 715, 743, 762, 1081, 1092, 1130
Lsp1109I	GCAGC	7 cut(s)	103, 116, 125, 215, 616, 1121, 1133
LweI	GCATC	4 cut(s)	336, 485, 596, 774
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	1 cut(s)	915
MaeIII	GTNAC	4 cut(s)	43, 76, 260, 1107
MalI	GATC	7 cut(s)	150, 188, 420, 682, 697, 825, 934
MboI	GATC	7 cut(s)	148, 186, 418, 680, 695, 823, 932
MboII	GAAGA	1 cut(s)	983
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	3 cut(s)	418, 680, 695
MhlI	GDGCHC	2 cut(s)	574, 673
MluCI	AATT	6 cut(s)	17, 295, 336, 399, 965, 1035
MmeI	TCCRAC	5 cut(s)	93, 176, 467, 658, 673
Mph1103I	ATGCAT	1 cut(s)	589
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	4 cut(s)	398, 500, 551, 875
MslI	CAYNNNNRTG	4 cut(s)	245, 312, 564, 801
MspA1I	CMGCKG	3 cut(s)	116, 1120, 1146
MunI	CAATTG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	158
MwoI	GCNNNNNNNGC	7 cut(s)	110, 113, 593, 788, 1008, 1140, 1143
NcoI	CCATGG	2 cut(s)	108, 1138
NdeII	GATC	7 cut(s)	148, 186, 418, 680, 695, 823, 932
NlaIII	CATG	7 cut(s)	112, 193, 479, 548, 800, 1095, 1142
NlaIV	GGNNCC	3 cut(s)	420, 571, 697
NmuCI	GTSAC	3 cut(s)	76, 260, 1107
NsiI	ATGCAT	1 cut(s)	589
NspI	RCATGY	2 cut(s)	479, 1095
PaqCI	CACCTGC	1 cut(s)	767
PctI	GAATGC	1 cut(s)	158
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	404, 635
PflFI	GACNNNGTC	2 cut(s)	74, 1105
PkrI	GCNGC	8 cut(s)	106, 115, 118, 205, 631, 1136, 1145, 1148
PspN4I	GGNNCC	3 cut(s)	420, 571, 697
PspPI	GGNCC	1 cut(s)	388
PstNI	CAGNNNCTG	2 cut(s)	119, 1149
PsuI	RGATCY	3 cut(s)	418, 680, 695
PsyI	GACNNNGTC	2 cut(s)	74, 1105
PvuII	CAGCTG	3 cut(s)	116, 1120, 1146
RsaI	GTAC	7 cut(s)	138, 216, 348, 512, 914, 1058, 1083
RsaNI	GTAC	7 cut(s)	137, 215, 347, 511, 913, 1057, 1082
RseI	CAYNNNNRTG	4 cut(s)	245, 312, 564, 801
SaqAI	TTAA	4 cut(s)	398, 500, 551, 875
SatI	GCNGC	8 cut(s)	105, 114, 117, 204, 630, 1135, 1144, 1147
Sau3AI	GATC	7 cut(s)	148, 186, 418, 680, 695, 823, 932
Sau96I	GGNCC	1 cut(s)	388
SduI	GDGCHC	2 cut(s)	574, 673
SfaNI	GCATC	4 cut(s)	336, 485, 596, 774
SinI	GGWCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	4 cut(s)	245, 312, 564, 801
SmlI	CTYRAG	2 cut(s)	815, 926
SmoI	CTYRAG	2 cut(s)	815, 926
Sse9I	AATT	6 cut(s)	17, 295, 336, 399, 965, 1035
SsiI	CCGC	7 cut(s)	8, 100, 163, 408, 486, 574, 1095
SspI	AATATT	1 cut(s)	907
SspMI	CTAG	1 cut(s)	720
StyI	CCWWGG	2 cut(s)	108, 1138
TaaI	ACNGT	9 cut(s)	55, 76, 260, 361, 505, 895, 1063, 1086, 1107
TaiI	ACGT	1 cut(s)	918
TasI	AATT	6 cut(s)	17, 295, 336, 399, 965, 1035
TatI	WGTACW	5 cut(s)	136, 346, 510, 1056, 1081
TfiI	GAWTC	2 cut(s)	404, 635
Tru1I	TTAA	4 cut(s)	398, 500, 551, 875
Tru9I	TTAA	4 cut(s)	398, 500, 551, 875
TscAI	CASTG	4 cut(s)	79, 263, 366, 1066
TseFI	GTSAC	3 cut(s)	76, 260, 1107
TseI	GCWGC	8 cut(s)	104, 113, 116, 203, 629, 1134, 1143, 1146
Tsp45I	GTSAC	3 cut(s)	76, 260, 1107
TspDTI	ATGAA	6 cut(s)	296, 548, 697, 813, 908, 1007
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	4 cut(s)	79, 263, 366, 1066
Tth111I	GACNNNGTC	2 cut(s)	74, 1105
VpaK11BI	GGWCC	1 cut(s)	388
XapI	RAATTY	1 cut(s)	1035
XceI	RCATGY	2 cut(s)	479, 1095
XmiI	GTMKAC	1 cut(s)	982
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	1 cut(s)	720
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.