Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002085

Physical Location & Seq

Genomic Coordinates Reverse (-)

1111906 .. 1117517

Gene Structure 5612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01941.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGAGGTCTGGTCCTCTTGGAATCTTATTCAACAATCCATGGCTTCTTCTCGGTTTCTGGGCAGTTAAGAGTTTTGCTGAGATCAAAGTTGGGACTGAGAATATTGGCCATAGTATAATCTCATCTGTAACAGTTTCTTGTTCAGCAAATATGGTGACTCAGACAGTTGATCTCCGTTCCGACACTGTCACCAAACCAACCGAGACAATGCGGGCTGCTATGGCAGCTGCTGTGGTTGATGATGATGTTCTCGGCTCTGATCCAACAGCATTCCGCTTGGAATCAGAAATGGCAAAGATCATGGGCAAGGAAGCAGCACTTTTTGTACCATCAGGCACTATGGGAAACCTCATTAGTGTGCTTGTTCATTGTGACATTAGAGGAAGTGAAGTCATTCTTGGGGATAATTCCCACATTCATATTTTTGAGAATGGAGGCATCTCAACAATTGGAGGTGTACATCCAAGAACAGTGAAAAACAACAATGATGGAACAATGGACCTCAATTTAATTGAAGCTACTATCAGAGATCCACGAGGAGAGCTTGTGTTTCCAACCACCAGACTTATATGCTTAGAGAACTCACATGCAAACTGCGGTGGTAGATGCTTAACTGTGGAGTACACAGATAGAGTTGGAGAGATAGCCAAGAAGCATGGCTTAAAGCTTCATATTGATGGTGCCCGCATTTTCAATGCATCTATTGCACTTGGTGTTCCTGTTGATAGACTTGTGCAAGCGGCTGATTCAGTTTCGGTTTGTCTCTCGAAAGGTATTGGTGCTCCTGTTGGATCTGTGATTGTTGGATCCGAAAGCTTCATTTCCAAGGCTAGAAGGTTGAGGAAAACTTTAGGTGGTGGAATGAGGCAGGTCGGTATCCTATGTGCGGCTGCTTTAGTGGCTTTACAAGAAAATGTTGCAAAGCTTGAGGGTGATCACAAGAAAGCTAAGACTTTAGCAGAGGGACTAAATCGAATCAAAGGAATAAGAGTGGATACTGAGATGGTTGAGACAAATATTCTGTATGTTCATGTTGATGAGGGATCAACAATCAGCGCAGAAAAGTTGTACAAAAAGTTGGAAGATTATGGAATACTTGCGATGAAAGAAAGCTCATCAAGCATTAGGATTGTTCTCCACCACCAAATTTCAGAAAGTGATGTGCAGTACACTTTGTCTTGTTTTCAGAAAGCTCTAACTGGAGCCCCTGAAGAAAATGGACACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

410

Amino Acids

43.92

Weight (kDa)

6.36

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta_elim_lyase	PF01212	7 - 294	4.4e-108	Beta-eliminating lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT3G04520 AT3G04520 AT3G04520
fragaria_vesca	FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941
malus_domestica	MD12G1246700.v1.1
prunus_persica	Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1
pyrus_communis	pycom12g22610
rosa_chinensis	RchiOBHm_Chr3g0449781
rosa_laevigata	RLG00000025800
rosa_multiflora	Rmu_sc0000610.1_g000012
rosa_roxburghii	Rroxscaffold_6G00427610
rosa_rugosa	Rorug02G0622900 Rorug02G0623000 Rorug02G0623100 Rorug02G0623200 Rorug02G0623300
rosa_samantha	Rh3AG021500 Rh3BG022200 Rh3CG020800 Rh3DG021900
rosa_wichuraiana	Rw3G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	859
AccB1I	GGYRCC	1 cut(s)	680
AciI	CCGC	6 cut(s)	211, 274, 597, 685, 740, 887
AclWI	GGATC	6 cut(s)	254, 524, 799, 801, 814, 1051
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	1146
AcuI	CTGAAG	1 cut(s)	1230
AdeI	CACNNNGTG	1 cut(s)	713
AfaI	GTAC	5 cut(s)	327, 459, 623, 1070, 1169
AfiI	CCNNNNNNNGG	1 cut(s)	886
AgsI	TTSAA	3 cut(s)	31, 515, 694
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	9 cut(s)	227, 518, 544, 667, 816, 925, 947, 1113, 1193
AluI	AGCT	9 cut(s)	227, 518, 544, 667, 816, 925, 947, 1113, 1193
Alw21I	GWGCWC	1 cut(s)	784
Alw26I	GTCTC	3 cut(s)	197, 767, 1004
AlwI	GGATC	6 cut(s)	254, 524, 799, 801, 814, 1051
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	5 cut(s)	215, 224, 227, 314, 890
ApoI	RAATTY	1 cut(s)	1146
Asp700I	GAANNNNTTC	1 cut(s)	393
AspLEI	GCGC	1 cut(s)	1058
AspS9I	GGNCC	2 cut(s)	11, 499
AsuHPI	GGTGA	3 cut(s)	166, 181, 944
AvaII	GGWCC	2 cut(s)	11, 499
BaeGI	GKGCMC	1 cut(s)	685
BalI	TGGCCA	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	806
BanI	GGYRCC	1 cut(s)	680
BanII	GRGCYC	1 cut(s)	1207
BauI	CACGAG	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	784
BbvI	GCAGC	5 cut(s)	202, 214, 236, 326, 877
BccI	CCATC	4 cut(s)	337, 482, 671, 997
BciVI	GTATCC	2 cut(s)	887, 988
BclI	TGATCA	1 cut(s)	934
BcoDI	GTCTC	3 cut(s)	197, 767, 1004
BfaI	CTAG	1 cut(s)	831
BfuAI	ACCTGC	1 cut(s)	859
BfuI	GTATCC	2 cut(s)	887, 988
BisI	GCNGC	7 cut(s)	216, 225, 228, 315, 741, 888, 891
BlsI	GCNGC	7 cut(s)	217, 226, 229, 316, 742, 889, 892
Bme18I	GGWCC	2 cut(s)	11, 499
BmgT120I	GGNCC	2 cut(s)	11, 499
BmiI	GGNNCC	3 cut(s)	682, 808, 1204
BmsI	GCATC	3 cut(s)	447, 596, 707
BpmI	CTGGAG	1 cut(s)	1221
BpuEI	CTTGAG	1 cut(s)	947
BsaJI	CCNNGG	2 cut(s)	38, 825
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	886
Bse1I	ACTGG	1 cut(s)	1204
BseDI	CCNNGG	2 cut(s)	38, 825
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	1 cut(s)	886
BseMII	CTCAG	4 cut(s)	69, 87, 173, 990
BseNI	ACTGG	1 cut(s)	1204
BseRI	GAGGAG	1 cut(s)	552
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	5 cut(s)	202, 214, 236, 326, 877
BsgI	GTGCAG	1 cut(s)	1184
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	680
BsiHKAI	GWGCWC	1 cut(s)	784
BslFI	GGGAC	2 cut(s)	106, 978
BslI	CCNNNNNNNGG	1 cut(s)	886
BsmAI	GTCTC	3 cut(s)	197, 767, 1004
BsmFI	GGGAC	2 cut(s)	106, 978
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	685, 784, 1207
Bsp1407I	TGTACA	2 cut(s)	457, 1068
Bsp143I	GATC	9 cut(s)	81, 169, 259, 297, 529, 791, 806, 934, 1043
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	6 cut(s)	211, 274, 597, 685, 740, 887
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	4 cut(s)	70, 88, 172, 991
BspLI	GGNNCC	3 cut(s)	682, 808, 1204
BspMI	ACCTGC	1 cut(s)	859
BspPI	GGATC	6 cut(s)	254, 524, 799, 801, 814, 1051
BspT107I	GGYRCC	1 cut(s)	680
BsrGI	TGTACA	2 cut(s)	457, 1068
BsrI	ACTGG	1 cut(s)	1204
BssECI	CCNNGG	2 cut(s)	38, 825
BssMI	GATC	9 cut(s)	81, 169, 259, 297, 529, 791, 806, 934, 1043
BssSI	CACGAG	1 cut(s)	534
BssT1I	CCWWGG	2 cut(s)	38, 825
Bst2BI	CACGAG	1 cut(s)	534
Bst4CI	ACNGT	5 cut(s)	133, 166, 187, 472, 616
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstAUI	TGTACA	2 cut(s)	457, 1068
BstC8I	GCNNGC	3 cut(s)	213, 685, 738
BstDEI	CTNAG	6 cut(s)	78, 96, 159, 574, 948, 999
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	1058
BstKTI	GATC	9 cut(s)	84, 172, 262, 300, 532, 794, 809, 937, 1046
BstMAI	GTCTC	3 cut(s)	197, 767, 1004
BstMBI	GATC	9 cut(s)	81, 169, 259, 297, 529, 791, 806, 934, 1043
BstMWI	GCNNNNNNNGC	5 cut(s)	221, 224, 704, 899, 1119
BstNSI	RCATGY	1 cut(s)	590
BstSLI	GKGCMC	1 cut(s)	685
BstV1I	GCAGC	5 cut(s)	202, 214, 236, 326, 877
BstX2I	RGATCY	3 cut(s)	529, 791, 806
BstYI	RGATCY	3 cut(s)	529, 791, 806
BsuI	GTATCC	2 cut(s)	887, 988
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	1115
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	183, 477
BveI	ACCTGC	1 cut(s)	859
Cac8I	GCNNGC	3 cut(s)	213, 685, 738
CaiI	CAGNNNCTG	1 cut(s)	230
CfoI	GCGC	1 cut(s)	1058
Cfr13I	GGNCC	2 cut(s)	11, 499
Csp6I	GTAC	5 cut(s)	326, 458, 622, 1069, 1168
CviAII	CATG	5 cut(s)	39, 301, 587, 656, 1031
CviQI	GTAC	5 cut(s)	326, 458, 622, 1069, 1168
DdeI	CTNAG	6 cut(s)	78, 96, 159, 574, 948, 999
DpnI	GATC	9 cut(s)	83, 171, 261, 299, 531, 793, 808, 936, 1045
DpnII	GATC	9 cut(s)	81, 169, 259, 297, 529, 791, 806, 934, 1043
DraIII	CACNNNGTG	1 cut(s)	713
EaeI	YGGCCR	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	38, 825
Eco24I	GRGCYC	1 cut(s)	1207
Eco47I	GGWCC	2 cut(s)	11, 499
Eco57I	CTGAAG	1 cut(s)	1230
EcoT14I	CCWWGG	2 cut(s)	38, 825
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	1 cut(s)	1207
ErhI	CCWWGG	2 cut(s)	38, 825
FaeI	CATG	5 cut(s)	42, 304, 590, 659, 1034
FalI	AAGNNNNNCTT	6 cut(s)	303, 335, 381, 413, 644, 676
FaqI	GGGAC	2 cut(s)	106, 978
FatI	CATG	5 cut(s)	38, 300, 586, 655, 1030
FauI	CCCGC	2 cut(s)	204, 692
FbaI	TGATCA	1 cut(s)	934
Fnu4HI	GCNGC	7 cut(s)	216, 225, 228, 315, 741, 888, 891
FokI	GGATG	1 cut(s)	447
FriOI	GRGCYC	1 cut(s)	1207
Fsp4HI	GCNGC	7 cut(s)	216, 225, 228, 315, 741, 888, 891
FspBI	CTAG	1 cut(s)	831
GlaI	GCGC	1 cut(s)	1057
GluI	GCNGC	7 cut(s)	216, 225, 228, 315, 741, 888, 891
GsuI	CTGGAG	1 cut(s)	1221
HaeIII	GGCC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	1058
Hin1II	CATG	5 cut(s)	42, 304, 590, 659, 1034
Hin6I	GCGC	1 cut(s)	1056
HinP1I	GCGC	1 cut(s)	1056
HindIII	AAGCTT	3 cut(s)	665, 814, 923
HinfI	GANTC	5 cut(s)	21, 157, 281, 746, 975
HphI	GGTGA	3 cut(s)	166, 181, 944
Hpy166II	GTNNAC	3 cut(s)	458, 624, 1170
Hpy188I	TCNGA	8 cut(s)	162, 181, 259, 286, 527, 811, 1153, 1188
Hpy188III	TCNNGA	1 cut(s)	766
Hpy8I	GTNNAC	3 cut(s)	458, 624, 1170
HpyAV	CCTTC	1 cut(s)	828
HpyCH4III	ACNGT	5 cut(s)	133, 166, 187, 472, 616
HpyCH4V	TGCA	6 cut(s)	590, 698, 707, 736, 920, 1165
HpyF10VI	GCNNNNNNNGC	5 cut(s)	221, 224, 704, 899, 1119
HpyF3I	CTNAG	6 cut(s)	78, 96, 159, 574, 948, 999
Hsp92II	CATG	5 cut(s)	42, 304, 590, 659, 1034
HspAI	GCGC	1 cut(s)	1056
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	9 cut(s)	81, 169, 259, 297, 529, 791, 806, 934, 1043
LmnI	GCTCC	2 cut(s)	787, 1202
LpnPI	CCDG	8 cut(s)	43, 318, 574, 732, 798, 854, 1185, 1221
Lsp1109I	GCAGC	5 cut(s)	202, 214, 236, 326, 877
LweI	GCATC	3 cut(s)	447, 596, 707
MaeI	CTAG	1 cut(s)	831
MaeIII	GTNAC	4 cut(s)	127, 154, 187, 371
MalI	GATC	9 cut(s)	83, 171, 261, 299, 531, 793, 808, 936, 1045
MboI	GATC	9 cut(s)	81, 169, 259, 297, 529, 791, 806, 934, 1043
MboII	GAAGA	3 cut(s)	38, 1094, 1223
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	3 cut(s)	529, 791, 806
MhlI	GDGCHC	3 cut(s)	685, 784, 1207
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	5 cut(s)	406, 447, 505, 510, 1146
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	7 cut(s)	204, 287, 578, 616, 769, 784, 1059
Mox20I	TGGCCA	1 cut(s)	108
Mph1103I	ATGCAT	1 cut(s)	700
MroXI	GAANNNNTTC	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	4 cut(s)	66, 509, 611, 662
MslI	CAYNNNNRTG	3 cut(s)	356, 675, 1035
Msp20I	TGGCCA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	269
MwoI	GCNNNNNNNGC	5 cut(s)	221, 224, 704, 899, 1119
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	9 cut(s)	81, 169, 259, 297, 529, 791, 806, 934, 1043
NlaIII	CATG	5 cut(s)	42, 304, 590, 659, 1034
NlaIV	GGNNCC	3 cut(s)	682, 808, 1204
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	3 cut(s)	154, 187, 371
NsiI	ATGCAT	1 cut(s)	700
NspI	RCATGY	1 cut(s)	590
PctI	GAATGC	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	4 cut(s)	21, 281, 746, 975
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	7 cut(s)	217, 226, 229, 316, 742, 889, 892
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PspN4I	GGNNCC	3 cut(s)	682, 808, 1204
PspPI	GGNCC	2 cut(s)	11, 499
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	3 cut(s)	529, 791, 806
PsyI	GACNNNGTC	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	5 cut(s)	327, 459, 623, 1070, 1169
RsaNI	GTAC	5 cut(s)	326, 458, 622, 1069, 1168
RseI	CAYNNNNRTG	3 cut(s)	356, 675, 1035
SaqAI	TTAA	4 cut(s)	66, 509, 611, 662
SatI	GCNGC	7 cut(s)	216, 225, 228, 315, 741, 888, 891
Sau3AI	GATC	9 cut(s)	81, 169, 259, 297, 529, 791, 806, 934, 1043
Sau96I	GGNCC	2 cut(s)	11, 499
SchI	GAGTC	1 cut(s)	151
SduI	GDGCHC	3 cut(s)	685, 784, 1207
SfaNI	GCATC	3 cut(s)	447, 596, 707
SinI	GGWCC	2 cut(s)	11, 499
SmiMI	CAYNNNNRTG	3 cut(s)	356, 675, 1035
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
Sse9I	AATT	5 cut(s)	406, 447, 505, 510, 1146
SsiI	CCGC	6 cut(s)	211, 274, 597, 685, 740, 887
SspI	AATATT	2 cut(s)	103, 1018
SspMI	CTAG	1 cut(s)	831
StyI	CCWWGG	2 cut(s)	38, 825
TaaI	ACNGT	5 cut(s)	133, 166, 187, 472, 616
TaqI	TCGA	2 cut(s)	767, 973
TasI	AATT	5 cut(s)	406, 447, 505, 510, 1146
TatI	WGTACW	4 cut(s)	457, 621, 1068, 1167
TauI	GCSGC	2 cut(s)	743, 890
TfiI	GAWTC	4 cut(s)	21, 281, 746, 975
Tru1I	TTAA	4 cut(s)	66, 509, 611, 662
Tru9I	TTAA	4 cut(s)	66, 509, 611, 662
TscAI	CASTG	2 cut(s)	190, 477
TseFI	GTSAC	3 cut(s)	154, 187, 371
TseI	GCWGC	5 cut(s)	215, 224, 227, 314, 890
Tsp45I	GTSAC	3 cut(s)	154, 187, 371
TspDTI	ATGAA	6 cut(s)	356, 407, 659, 808, 1019, 1118
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	190, 477
Tth111I	GACNNNGTC	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	11, 499
XapI	RAATTY	1 cut(s)	1146
XceI	RCATGY	1 cut(s)	590
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	1 cut(s)	831
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.