Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002085

Physical Location & Seq

Genomic Coordinates Reverse (-)

1217174 .. 1219847

Gene Structure 2674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGTGACGCCAACTACAATTAGAACCGTCGATCTCCGCTCCGACACGGTGACTAAACCAACAGAGTCAATGCGTTCAGCAATGGCAAACGCGGAAGTAGACGACGACGTTTTGGGAAACGATCCAACGGCTCTGCGTTTGGAGAAAGAGGTGGCTGAGATCGCTGGAAAAGAGGCGGCGATGTTTGTTCCGTCAGGGACAATGGGGAATCTGATAAGCGTGTTGGTCCATTGTGATGAGAGAGGGAGTGAAGTGATTCTTGGAGACGACTCTCACATTCATATATATGAAAACGGCGGCGTTTCAAGCCTCGGTGGTGTGCATCCGAGGACGGTGAAGAATGAGGAAGACGGTACGATGGAGATTGGTGCTATTGAAGCTGCCGTGAGGAGTCCCAAAGGAGATCTCCATCATCCGGTTACTAAGCTTATATGTCTTGAGAATACTCAAGCAAATTGTGGAGGTAGATGCCTTCCTATAGAATATATAGACAAAGTCGGAGAATTAGCCAAGAAACATGGTTTGAAGCTTCACATTGACGGAGCTAGGATTTTCAACGCTTCTGTGGCACTTGGAGTTCCCGTGAAGAGGATTGTTCAAGCAGCTGATTCTGTCTCGATCTGTTTGTCGAAAGGTATTGGTGCACCGGTCGGTTCGGTAATCGTGGGAAGCAAGAAGTTCATTACTAAAGCAAGGTGGTTAAGGAAAACATTAGGCGGAGGAATGAGACAGATCGGCGTGCTCTGCGCCGCCGCATTGGTGGCTCTCCATGAAAACGTCGCCAAGCTCGAAGATGACCATAAGAAAGCCAGGGTTTTGGCAGAAGGACTGAACCGGATTGAACGGTTAAGAGTGAACGTTGCAGCTGTGGAAACCAACATCATATACGTAGACATACCAGAAGATCCAAAATTTGGAGCAGAAGAGGCATGTAAGAGCTTGGAAGATGTCGGTGTGCTTGTCATACCCCAAGCTACATTCAGAATCAGGATTGTTCTACACCACCAAATCTCAGACGTCGACGTGGAATATGTACTCTCTTGCTTTGAGAAAATATTTCACTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004793 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006566 GO:0006567 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008732 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009068 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016054 GO:0016829 GO:0016830 GO:0016832 GO:0017144 GO:0019752 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046395 GO:0065007 GO:0065008 GO:0071704 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01130 ko01230 map00260 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

Beta_elim_lyase

Protein Analysis

355

Amino Acids

38.25

Weight (kDa)

6.02

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta_elim_lyase	PF01212	11 - 297	8.3e-112	Beta-eliminating lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT1G08630 AT3G04520 AT3G04520 AT3G04520
fragaria_vesca	FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941 FvH4_6g01941
malus_domestica	MD12G1246700.v1.1
prunus_persica	Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1 Prupe.6G349500_v2.0.a1
pyrus_communis	pycom12g22610
rosa_chinensis	RchiOBHm_Chr3g0449781
rosa_laevigata	RLG00000025800
rosa_multiflora	Rmu_sc0000610.1_g000012
rosa_roxburghii	Rroxscaffold_6G00427610
rosa_rugosa	Rorug02G0622900 Rorug02G0623000 Rorug02G0623100 Rorug02G0623200 Rorug02G0623300
rosa_samantha	Rh3AG021500 Rh3BG022200 Rh3CG020800 Rh3DG021900
rosa_wichuraiana	Rw3G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1020
AccB7I	CCANNNNNTGG	1 cut(s)	914
AccBSI	CCGCTC	1 cut(s)	39
AccI	GTMKAC	3 cut(s)	99, 891, 1020
AccII	CGCG	1 cut(s)	92
AciI	CCGC	7 cut(s)	37, 92, 176, 297, 717, 750, 753
AclI	AACGTT	1 cut(s)	858
AclWI	GGATC	2 cut(s)	116, 899
AcsI	RAATTY	1 cut(s)	911
AcyI	GRCGYC	2 cut(s)	8, 1017
AfaI	GTAC	2 cut(s)	355, 1035
AfiI	CCNNNNNNNGG	3 cut(s)	415, 588, 914
AgeI	ACCGGT	1 cut(s)	646
AgsI	TTSAA	6 cut(s)	306, 377, 526, 556, 599, 842
AjiI	CACGTC	1 cut(s)	1024
AjnI	CCWGG	1 cut(s)	809
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	9 cut(s)	380, 427, 529, 545, 605, 787, 866, 939, 974
AluI	AGCT	9 cut(s)	380, 427, 529, 545, 605, 787, 866, 939, 974
Alw21I	GWGCWC	2 cut(s)	646, 744
Alw26I	GTCTC	3 cut(s)	258, 619, 721
Alw44I	GTGCAC	1 cut(s)	642
AlwI	GGATC	2 cut(s)	116, 899
ApaLI	GTGCAC	1 cut(s)	642
ApeKI	GCWGC	3 cut(s)	380, 602, 863
ApoI	RAATTY	1 cut(s)	911
AsiGI	ACCGGT	1 cut(s)	646
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	749
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	3 cut(s)	16, 61, 346
AvaII	GGWCC	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	646
BauI	CACGAG	1 cut(s)	1063
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	2 cut(s)	646, 744
BbvI	GCAGC	3 cut(s)	367, 614, 875
BccI	CCATC	2 cut(s)	352, 417
BceAI	ACGGC	3 cut(s)	144, 310, 368
BciT130I	CCWGG	1 cut(s)	811
BcoDI	GTCTC	3 cut(s)	258, 619, 721
BfaI	CTAG	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	477
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	7 cut(s)	177, 298, 381, 603, 750, 753, 864
BlsI	GCNGC	7 cut(s)	178, 299, 382, 604, 751, 754, 865
Bme1390I	CCNGG	1 cut(s)	811
Bme18I	GGWCC	1 cut(s)	226
BmgBI	CACGTC	1 cut(s)	1024
BmgT120I	GGNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	811
BmsI	GCATC	2 cut(s)	331, 458
BpiI	GAAGAC	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	432, 458
BsaAI	YACGTR	1 cut(s)	889
BsaBI	GATNNNNATC	1 cut(s)	408
BsaHI	GRCGYC	2 cut(s)	8, 1017
BsaJI	CCNNGG	3 cut(s)	310, 326, 810
BsaWI	WCCGGW	3 cut(s)	415, 646, 834
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 588, 914
Bse118I	RCCGGY	1 cut(s)	646
Bse3DI	GCAATG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	811
BseDI	CCNNGG	3 cut(s)	310, 326, 810
BseGI	GGATG	2 cut(s)	322, 412
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	3 cut(s)	415, 588, 914
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	2 cut(s)	147, 1026
BseRI	GAGGAG	1 cut(s)	403
BseSI	GKGCMC	1 cut(s)	646
BseXI	GCAGC	3 cut(s)	367, 614, 875
Bsh1236I	CGCG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	651
BshTI	ACCGGT	1 cut(s)	646
BsiEI	CGRYCG	1 cut(s)	651
BsiHKAI	GWGCWC	2 cut(s)	646, 744
BsiSI	CCGG	3 cut(s)	416, 647, 835
BslFI	GGGAC	2 cut(s)	211, 378
BslI	CCNNNNNNNGG	3 cut(s)	415, 588, 914
BsmAI	GTCTC	3 cut(s)	258, 619, 721
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	2 cut(s)	211, 378
Bsp1286I	GDGCHC	2 cut(s)	646, 744
Bsp143I	GATC	7 cut(s)	31, 121, 159, 403, 618, 732, 904
BspACI	CCGC	7 cut(s)	37, 92, 176, 297, 717, 750, 753
BspCNI	CTCAG	2 cut(s)	148, 1025
BspFNI	CGCG	1 cut(s)	92
BspPI	GGATC	2 cut(s)	116, 899
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	646
BssAI	RCCGGY	1 cut(s)	646
BssECI	CCNNGG	3 cut(s)	310, 326, 810
BssMI	GATC	7 cut(s)	31, 121, 159, 403, 618, 732, 904
BssNI	GRCGYC	2 cut(s)	8, 1017
BssSI	CACGAG	1 cut(s)	1063
Bst2BI	CACGAG	1 cut(s)	1063
Bst2UI	CCWGG	1 cut(s)	811
Bst4CI	ACNGT	5 cut(s)	28, 49, 334, 353, 846
Bst6I	CTCTTC	2 cut(s)	581, 918
BstACI	GRCGYC	2 cut(s)	8, 1017
BstBAI	YACGTR	1 cut(s)	889
BstC8I	GCNNGC	1 cut(s)	740
BstDEI	CTNAG	3 cut(s)	156, 423, 1012
BstF5I	GGATG	2 cut(s)	322, 412
BstFNI	CGCG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	749
BstKTI	GATC	7 cut(s)	34, 124, 162, 406, 621, 735, 907
BstMAI	GTCTC	3 cut(s)	258, 619, 721
BstMBI	GATC	7 cut(s)	31, 121, 159, 403, 618, 732, 904
BstMCI	CGRYCG	1 cut(s)	651
BstMWI	GCNNNNNNNGC	7 cut(s)	161, 306, 377, 566, 744, 761, 926
BstNI	CCWGG	1 cut(s)	811
BstNSI	RCATGY	1 cut(s)	933
BstSCI	CCNGG	1 cut(s)	809
BstSFI	CTRYAG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	646
BstSNI	TACGTA	1 cut(s)	889
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	367, 614, 875
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	2 cut(s)	403, 904
BstXI	CCANNNNNNTGG	1 cut(s)	817
BstYI	RGATCY	2 cut(s)	403, 904
BtgZI	GCGATG	1 cut(s)	194
BtrI	CACGTC	1 cut(s)	1024
BtsCI	GGATG	2 cut(s)	322, 412
Cac8I	GCNNGC	1 cut(s)	740
CfoI	GCGC	1 cut(s)	749
Cfr10I	RCCGGY	1 cut(s)	646
Cfr13I	GGNCC	1 cut(s)	226
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	354, 1034
CspAI	ACCGGT	1 cut(s)	646
CviAII	CATG	3 cut(s)	518, 770, 930
CviQI	GTAC	2 cut(s)	354, 1034
DdeI	CTNAG	3 cut(s)	156, 423, 1012
DpnI	GATC	7 cut(s)	33, 123, 161, 405, 620, 734, 906
DpnII	GATC	7 cut(s)	31, 121, 159, 403, 618, 732, 904
Eam1104I	CTCTTC	2 cut(s)	581, 918
EarI	CTCTTC	2 cut(s)	581, 918
EciI	GGCGGA	1 cut(s)	732
Eco105I	TACGTA	1 cut(s)	889
Eco47I	GGWCC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	809
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	3 cut(s)	521, 773, 933
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FaqI	GGGAC	2 cut(s)	211, 378
FatI	CATG	3 cut(s)	517, 769, 929
FblI	GTMKAC	3 cut(s)	99, 891, 1020
Fnu4HI	GCNGC	7 cut(s)	177, 298, 381, 603, 750, 753, 864
FokI	GGATG	2 cut(s)	309, 399
Fsp4HI	GCNGC	7 cut(s)	177, 298, 381, 603, 750, 753, 864
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	1 cut(s)	748
GluI	GCNGC	7 cut(s)	177, 298, 381, 603, 750, 753, 864
HapII	CCGG	3 cut(s)	416, 647, 835
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	749
Hin1I	GRCGYC	2 cut(s)	8, 1017
Hin1II	CATG	3 cut(s)	521, 773, 933
Hin6I	GCGC	1 cut(s)	747
HinP1I	GCGC	1 cut(s)	747
HincII	GTYRAC	1 cut(s)	1021
HindII	GTYRAC	1 cut(s)	1021
HindIII	AAGCTT	2 cut(s)	425, 527
HinfI	GANTC	7 cut(s)	65, 208, 256, 269, 391, 608, 984
HpaII	CCGG	3 cut(s)	416, 647, 835
HphI	GGTGA	3 cut(s)	16, 61, 346
Hpy166II	GTNNAC	5 cut(s)	100, 644, 856, 892, 1021
Hpy188I	TCNGA	6 cut(s)	43, 213, 327, 500, 983, 1015
Hpy188III	TCNNGA	4 cut(s)	437, 616, 988, 1065
Hpy8I	GTNNAC	5 cut(s)	100, 644, 856, 892, 1021
Hpy99I	CGWCG	6 cut(s)	32, 107, 110, 782, 1022, 1025
HpyAV	CCTTC	2 cut(s)	482, 818
HpyCH4III	ACNGT	5 cut(s)	28, 49, 334, 353, 846
HpyCH4IV	ACGT	6 cut(s)	108, 777, 858, 888, 1017, 1023
HpyCH4V	TGCA	3 cut(s)	322, 644, 863
HpyF10VI	GCNNNNNNNGC	7 cut(s)	161, 306, 377, 566, 744, 761, 926
HpyF3I	CTNAG	3 cut(s)	156, 423, 1012
HpySE526I	ACGT	6 cut(s)	108, 777, 858, 888, 1017, 1023
Hsp92I	GRCGYC	2 cut(s)	8, 1017
Hsp92II	CATG	3 cut(s)	521, 773, 933
HspAI	GCGC	1 cut(s)	747
Kzo9I	GATC	7 cut(s)	31, 121, 159, 403, 618, 732, 904
LmnI	GCTCC	3 cut(s)	44, 542, 917
LpnPI	CCDG	9 cut(s)	150, 180, 429, 660, 796, 823, 848, 912, 973
Lsp1109I	GCAGC	3 cut(s)	367, 614, 875
LweI	GCATC	2 cut(s)	331, 458
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	6 cut(s)	108, 777, 858, 888, 1017, 1023
MaeIII	GTNAC	3 cut(s)	4, 49, 418
MalI	GATC	7 cut(s)	33, 123, 161, 405, 620, 734, 906
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	7 cut(s)	31, 121, 159, 403, 618, 732, 904
MboII	GAAGA	7 cut(s)	349, 359, 598, 803, 914, 935, 956
MflI	RGATCY	2 cut(s)	403, 904
MhlI	GDGCHC	2 cut(s)	646, 744
MluCI	AATT	4 cut(s)	18, 454, 503, 911
MlyI	GAGTC	3 cut(s)	74, 263, 400
MmeI	TCCRAC	3 cut(s)	66, 149, 478
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	2 cut(s)	701, 848
MslI	CAYNNNNRTG	2 cut(s)	234, 285
MspA1I	CMGCKG	2 cut(s)	605, 866
MspI	CCGG	3 cut(s)	416, 647, 835
MspR9I	CCNGG	1 cut(s)	811
MvaI	CCWGG	1 cut(s)	811
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	7 cut(s)	161, 306, 377, 566, 744, 761, 926
NdeII	GATC	7 cut(s)	31, 121, 159, 403, 618, 732, 904
NlaIII	CATG	3 cut(s)	521, 773, 933
NmuCI	GTSAC	2 cut(s)	4, 49
NspI	RCATGY	1 cut(s)	933
PcsI	WCGNNNNNNNCGW	1 cut(s)	786
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	4 cut(s)	208, 256, 608, 984
PflFI	GACNNNGTC	1 cut(s)	494
PflMI	CCANNNNNTGG	1 cut(s)	914
PinAI	ACCGGT	1 cut(s)	646
PkrI	GCNGC	7 cut(s)	178, 299, 382, 604, 751, 754, 865
PleI	GAGTC	3 cut(s)	73, 263, 399
PpsI	GAGTC	3 cut(s)	73, 263, 399
Ppu21I	YACGTR	1 cut(s)	889
Psp1406I	AACGTT	1 cut(s)	858
Psp6I	CCWGG	1 cut(s)	809
PspGI	CCWGG	1 cut(s)	809
PspPI	GGNCC	1 cut(s)	226
PsuI	RGATCY	2 cut(s)	403, 904
PsyI	GACNNNGTC	1 cut(s)	494
PvuII	CAGCTG	2 cut(s)	605, 866
RsaI	GTAC	2 cut(s)	355, 1035
RsaNI	GTAC	2 cut(s)	354, 1034
RseI	CAYNNNNRTG	2 cut(s)	234, 285
SalI	GTCGAC	1 cut(s)	1019
SaqAI	TTAA	2 cut(s)	701, 848
SatI	GCNGC	7 cut(s)	177, 298, 381, 603, 750, 753, 864
Sau3AI	GATC	7 cut(s)	31, 121, 159, 403, 618, 732, 904
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	3 cut(s)	74, 263, 400
ScrFI	CCNGG	1 cut(s)	811
SduI	GDGCHC	2 cut(s)	646, 744
SfaNI	GCATC	2 cut(s)	331, 458
SfcI	CTRYAG	1 cut(s)	477
SgrDI	CGTCGACG	1 cut(s)	1019
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	2 cut(s)	234, 285
SmlI	CTYRAG	2 cut(s)	437, 447
SmoI	CTYRAG	2 cut(s)	437, 447
SnaBI	TACGTA	1 cut(s)	889
Sse9I	AATT	4 cut(s)	18, 454, 503, 911
SsiI	CCGC	7 cut(s)	37, 92, 176, 297, 717, 750, 753
SspI	AATATT	1 cut(s)	1056
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	809
TaaI	ACNGT	5 cut(s)	28, 49, 334, 353, 846
TaiI	ACGT	6 cut(s)	111, 780, 861, 891, 1020, 1026
TaqI	TCGA	5 cut(s)	30, 617, 629, 789, 1020
TasI	AATT	4 cut(s)	18, 454, 503, 911
TatI	WGTACW	1 cut(s)	1033
TauI	GCSGC	4 cut(s)	179, 300, 752, 755
TfiI	GAWTC	4 cut(s)	208, 256, 608, 984
Tru1I	TTAA	2 cut(s)	701, 848
Tru9I	TTAA	2 cut(s)	701, 848
TseFI	GTSAC	2 cut(s)	4, 49
TseI	GCWGC	3 cut(s)	380, 602, 863
Tsp45I	GTSAC	2 cut(s)	4, 49
TspDTI	ATGAA	4 cut(s)	269, 303, 670, 786
TspGWI	ACGGA	2 cut(s)	180, 555
Tth111I	GACNNNGTC	1 cut(s)	494
Van91I	CCANNNNNTGG	1 cut(s)	914
VneI	GTGCAC	1 cut(s)	642
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	1 cut(s)	911
XceI	RCATGY	1 cut(s)	933
XmiI	GTMKAC	3 cut(s)	99, 891, 1020
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	1 cut(s)	546
ZraI	GACGTC	1 cut(s)	1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.