Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006612

Physical Location & Seq

Genomic Coordinates Forward (+)

2801042 .. 2804711

Gene Structure 3670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAAGATTCTTACACTCGTAATGCTTTTATGCTACTCGTTCGTCTCTTCTACCGGAGATACGACTATCCACACAAACAATTGGGCTGTTTTGGTCTGCACTTCTCGCTTCTGGTTTAACTACCGGCACATGGCCAATACTCTGTCCCTCTATAGGACAGTCAAGAGACTTGGAATACCAGATGAGAGGATCATTCTTATGCTGGCTGATGATATGGCCTGTAATGCTAGAAATGAATATCCTGCTCAAGTTTTCAACAATGAAAACCACAAACTTAACCTCTATGGAGATAACGTTGAGGTAGATTATCGTGGATATGAGGTAACAGTTGAAAATTTCTTACGGGTTTTGACTGGGCGTCATGAGAATGCTGTTCCAAGGTCAAAGCGTCTCCTCAGTGATGAGGGTAGCCATATACTACTGTACATGACTGGGCATGGAGGTGATGAATTTTTGAAGTTTCAAGATGCAGAAGAACTCCAGAGTCACGATTTAGCAGATGCTGTAAAACAAATGAAAGAGAAGCGTAGATTCAAGGAGCTGATGATAATGGTTGATACTTGCCAAGCTGCCACTCTCTTTAATCAGCTTCAATCTCCTGGTGTTTTGGCTATTGGTAGCAGTCTAAAAGGAGAGAACTCATATTCCCATCACCTGGATTCAGATATTGGTGTATCTGTTGTAGATCGGTTTACATATTACACTCTTGCATTCTTTGAGAGGCTCAATATATATGACAATGCATCACTTAACAGTTTATTTAGGTCCTACGATCCGAGACTGCTAATGTCTACTGCCTACTACCGGACTGATCTTTACCAACCACATCTGGTGGAGGTACCGGTCACAAATTTCTTCGGTTCAGTTATGGAGACCATTCATACTGATTCAGCTTACAAAGCTTTCTCAAGTAAAATCTCCGAAAGAAAGATCAATTCTGAGATGCCATTCAATCAACTTTCCGAACACGATCTTAAAGAAGAGCTTGAGAATACAAACATACCAAACGATGAGTTGATAGCTGAGAAGCAAAAATGCCCATATTCACAAATGCGGGCAGACCTCCACGAGAAAGTGGAGAAGCTTGAAAATGTCGATACAGTGGTTAACCTCAGCATAGCAGTGATGGTACTCGCTGTAATGGTCTCATCATCTTTACTACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003923 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0016787 GO:0019538 GO:0019637 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0034394 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0090407 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Peptidase_C13

Protein Analysis

388

Amino Acids

44.54

Weight (kDa)

5.57

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C13	PF01650	27 - 242	4e-45	Peptidase C13 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08750 AT1G08750 AT1G08750
fragaria_vesca	FvH4_5g04770 FvH4_5g04770 FvH4_5g04770 FvH4_6g02380 FvH4_6g02380 FvH4_6g02380 FvH4_6g02400
malus_domestica	MD04G1227700.v1.1
prunus_persica	Prupe.6G347300_v2.0.a1 Prupe.6G347300_v2.0.a1
pyrus_communis	pycom04g20120
rosa_chinensis	RchiOBHm_Chr3g0450151
rosa_laevigata	RLG00000025751
rosa_multiflora	Rmu_sc0010184.1_g000006 Rmu_sc0010184.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427910
rosa_rugosa	Rorug02G0625900
rosa_samantha	Rh3AG025200 Rh3BG025800 Rh3BG323000 Rh3CG024700 Rh3DG025800
rosa_wichuraiana	Rw3G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	838
AccB1I	GGYRCC	1 cut(s)	838
AccB7I	CCANNNNNTGG	1 cut(s)	655
AccI	GTMKAC	1 cut(s)	791
AciI	CCGC	1 cut(s)	1054
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	2 cut(s)	197, 767
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	3 cut(s)	334, 449, 850
AcyI	GRCGYC	1 cut(s)	358
AfaI	GTAC	3 cut(s)	425, 840, 1131
AfiI	CCNNNNNNNGG	4 cut(s)	130, 153, 655, 804
AgeI	ACCGGT	1 cut(s)	841
AgsI	TTSAA	8 cut(s)	256, 332, 457, 464, 535, 593, 952, 1088
AhdI	GACNNNNNGTC	1 cut(s)	357
AjnI	CCWGG	2 cut(s)	598, 654
AloI	GAACNNNNNNTCC	2 cut(s)	629, 661
AluBI	AGCT	8 cut(s)	541, 569, 589, 893, 902, 985, 1022, 1084
AluI	AGCT	8 cut(s)	541, 569, 589, 893, 902, 985, 1022, 1084
Alw26I	GTCTC	6 cut(s)	49, 160, 395, 772, 866, 1150
AlwI	GGATC	2 cut(s)	197, 767
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	2 cut(s)	132, 216
ApeKI	GCWGC	1 cut(s)	569
ApoI	RAATTY	3 cut(s)	334, 449, 850
AsiGI	ACCGGT	1 cut(s)	841
Asp718I	GGTACC	1 cut(s)	838
AspS9I	GGNCC	1 cut(s)	765
AsuHPI	GGTGA	2 cut(s)	455, 644
AvaII	GGWCC	1 cut(s)	765
BaeI	ACNNNNGTAYC	2 cut(s)	1089, 1122
BalI	TGGCCA	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	838
BauI	CACGAG	1 cut(s)	1067
BbvCI	CCTCAGC	1 cut(s)	1112
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	2 cut(s)	657, 1120
BciT130I	CCWGG	2 cut(s)	600, 656
BcoDI	GTCTC	6 cut(s)	49, 160, 395, 772, 866, 1150
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	571
Bme1390I	CCNGG	2 cut(s)	600, 656
Bme18I	GGWCC	1 cut(s)	765
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	765
BmiI	GGNNCC	1 cut(s)	840
BmrFI	CCNGG	2 cut(s)	600, 656
BmrI	ACTGGG	2 cut(s)	363, 441
BmsI	GCATC	4 cut(s)	457, 490, 752, 933
BmuI	ACTGGG	2 cut(s)	363, 441
BpmI	CTGGAG	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	1112
BpuEI	CTTGAG	3 cut(s)	231, 892, 1007
BsaHI	GRCGYC	1 cut(s)	358
BsaI	GGTCTC	2 cut(s)	866, 1150
BsaJI	CCNNGG	1 cut(s)	377
BsaWI	WCCGGW	3 cut(s)	53, 804, 841
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 153, 655, 804
Bse118I	RCCGGY	2 cut(s)	123, 841
Bse1I	ACTGG	2 cut(s)	358, 436
BseBI	CCWGG	2 cut(s)	600, 656
BseDI	CCNNGG	1 cut(s)	377
BseLI	CCNNNNNNNGG	4 cut(s)	130, 153, 655, 804
BseMII	CTCAG	4 cut(s)	409, 930, 1014, 1126
BseNI	ACTGG	2 cut(s)	358, 436
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	556
BsgI	GTGCAG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	134, 218
BshNI	GGYRCC	1 cut(s)	838
BshTI	ACCGGT	1 cut(s)	841
BsiSI	CCGG	4 cut(s)	54, 124, 805, 842
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	4 cut(s)	130, 153, 655, 804
BsmAI	GTCTC	6 cut(s)	49, 160, 395, 772, 866, 1150
BsmBI	CGTCTC	2 cut(s)	49, 395
BsmFI	GGGAC	1 cut(s)	130
BsmI	GAATGC	2 cut(s)	373, 710
BsnI	GGCC	2 cut(s)	134, 218
Bso31I	GGTCTC	2 cut(s)	866, 1150
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	6 cut(s)	189, 685, 772, 811, 930, 970
BspACI	CCGC	1 cut(s)	1054
BspANI	GGCC	2 cut(s)	134, 218
BspCNI	CTCAG	4 cut(s)	408, 931, 1015, 1125
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	840
BspPI	GGATC	2 cut(s)	197, 767
BspQI	GCTCTTC	1 cut(s)	975
BspT107I	GGYRCC	1 cut(s)	838
BspTNI	GGTCTC	2 cut(s)	866, 1150
BsrFI	RCCGGY	2 cut(s)	123, 841
BsrGI	TGTACA	1 cut(s)	423
BsrI	ACTGG	2 cut(s)	358, 436
BssAI	RCCGGY	2 cut(s)	123, 841
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	6 cut(s)	189, 685, 772, 811, 930, 970
BssNI	GRCGYC	1 cut(s)	358
BssSI	CACGAG	1 cut(s)	1067
BssT1I	CCWWGG	1 cut(s)	377
Bst2BI	CACGAG	1 cut(s)	1067
Bst2UI	CCWGG	2 cut(s)	600, 656
Bst4CI	ACNGT	5 cut(s)	160, 328, 423, 755, 1102
Bst6I	CTCTTC	2 cut(s)	52, 975
BstACI	GRCGYC	1 cut(s)	358
BstAUI	TGTACA	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	204, 1056
BstDEI	CTNAG	4 cut(s)	395, 939, 1023, 1112
BstKTI	GATC	6 cut(s)	192, 688, 775, 814, 933, 973
BstMAI	GTCTC	6 cut(s)	49, 160, 395, 772, 866, 1150
BstMBI	GATC	6 cut(s)	189, 685, 772, 811, 930, 970
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 224, 899
BstNI	CCWGG	2 cut(s)	600, 656
BstSCI	CCNGG	2 cut(s)	598, 654
BstSFI	CTRYAG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	134, 218
BtsI	GCAGTG	1 cut(s)	1128
BtsIMutI	CAGTG	3 cut(s)	403, 1107, 1128
Cac8I	GCNNGC	2 cut(s)	204, 1056
CaiI	CAGNNNCTG	1 cut(s)	503
CciI	TCATGA	1 cut(s)	361
Cfr10I	RCCGGY	2 cut(s)	123, 841
Cfr13I	GGNCC	1 cut(s)	765
CseI	GACGC	2 cut(s)	347, 377
Csp6I	GTAC	3 cut(s)	424, 839, 1130
CspAI	ACCGGT	1 cut(s)	841
CviAII	CATG	4 cut(s)	130, 362, 427, 437
CviQI	GTAC	3 cut(s)	424, 839, 1130
DdeI	CTNAG	4 cut(s)	395, 939, 1023, 1112
DpnI	GATC	6 cut(s)	191, 687, 774, 813, 932, 972
DpnII	GATC	6 cut(s)	189, 685, 772, 811, 930, 970
DriI	GACNNNNNGTC	1 cut(s)	357
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	52, 975
Eam1105I	GACNNNNNGTC	1 cut(s)	357
EarI	CTCTTC	2 cut(s)	52, 975
Eco130I	CCWWGG	1 cut(s)	377
Eco31I	GGTCTC	2 cut(s)	866, 1150
Eco47I	GGWCC	1 cut(s)	765
EcoO109I	RGGNCCY	1 cut(s)	765
EcoRII	CCWGG	2 cut(s)	598, 654
EcoT14I	CCWWGG	1 cut(s)	377
EcoT22I	ATGCAT	1 cut(s)	745
ErhI	CCWWGG	1 cut(s)	377
Esp3I	CGTCTC	2 cut(s)	49, 395
FaeI	CATG	4 cut(s)	133, 365, 430, 440
FalI	AAGNNNNNCTT	2 cut(s)	969, 1001
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	4 cut(s)	129, 361, 426, 436
FauI	CCCGC	1 cut(s)	1047
FblI	GTMKAC	1 cut(s)	791
Fnu4HI	GCNGC	1 cut(s)	570
Fsp4HI	GCNGC	1 cut(s)	570
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	1 cut(s)	570
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	134, 218
HapII	CCGG	4 cut(s)	54, 124, 805, 842
HgaI	GACGC	2 cut(s)	347, 377
Hin1I	GRCGYC	1 cut(s)	358
Hin1II	CATG	4 cut(s)	133, 365, 430, 440
HincII	GTYRAC	1 cut(s)	1108
HindII	GTYRAC	1 cut(s)	1108
HindIII	AAGCTT	2 cut(s)	900, 1082
HinfI	GANTC	5 cut(s)	7, 484, 531, 659, 887
HpaI	GTTAAC	1 cut(s)	1108
HpaII	CCGG	4 cut(s)	54, 124, 805, 842
HphI	GGTGA	2 cut(s)	455, 644
Hpy166II	GTNNAC	3 cut(s)	693, 792, 1108
Hpy188I	TCNGA	5 cut(s)	664, 777, 922, 940, 964
Hpy188III	TCNNGA	5 cut(s)	163, 362, 464, 481, 488
Hpy8I	GTNNAC	3 cut(s)	693, 792, 1108
HpyCH4III	ACNGT	5 cut(s)	160, 328, 423, 755, 1102
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	4 cut(s)	99, 470, 710, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 224, 899
HpyF3I	CTNAG	4 cut(s)	395, 939, 1023, 1112
HpySE526I	ACGT	1 cut(s)	294
Hsp92I	GRCGYC	1 cut(s)	358
Hsp92II	CATG	4 cut(s)	133, 365, 430, 440
KpnI	GGTACC	1 cut(s)	842
KspAI	GTTAAC	1 cut(s)	1108
Kzo9I	GATC	6 cut(s)	189, 685, 772, 811, 930, 970
LguI	GCTCTTC	1 cut(s)	975
LmnI	GCTCC	1 cut(s)	538
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	4 cut(s)	457, 490, 752, 933
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	3 cut(s)	322, 485, 844
MalI	GATC	6 cut(s)	191, 687, 774, 813, 932, 972
MboI	GATC	6 cut(s)	189, 685, 772, 811, 930, 970
MboII	GAAGA	5 cut(s)	16, 39, 485, 847, 992
MfeI	CAATTG	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	5 cut(s)	79, 334, 449, 850, 934
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	493
Mox20I	TGGCCA	1 cut(s)	134
Mph1103I	ATGCAT	1 cut(s)	745
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	6 cut(s)	117, 276, 582, 750, 975, 1107
MslI	CAYNNNNRTG	4 cut(s)	197, 366, 441, 1121
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	4 cut(s)	54, 124, 805, 842
MspR9I	CCNGG	2 cut(s)	600, 656
MunI	CAATTG	1 cut(s)	79
Mva1269I	GAATGC	2 cut(s)	373, 710
MvaI	CCWGG	2 cut(s)	600, 656
MwoI	GCNNNNNNNGC	3 cut(s)	105, 224, 899
NdeII	GATC	6 cut(s)	189, 685, 772, 811, 930, 970
NlaIII	CATG	4 cut(s)	133, 365, 430, 440
NlaIV	GGNNCC	1 cut(s)	840
NmuCI	GTSAC	2 cut(s)	485, 844
NsiI	ATGCAT	1 cut(s)	745
PagI	TCATGA	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	975
PctI	GAATGC	2 cut(s)	373, 710
PfeI	GAWTC	4 cut(s)	7, 531, 659, 887
PflMI	CCANNNNNTGG	1 cut(s)	655
PinAI	ACCGGT	1 cut(s)	841
PkrI	GCNGC	1 cut(s)	571
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
PpuMI	RGGWCCY	1 cut(s)	765
Psp1406I	AACGTT	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	765
Psp6I	CCWGG	2 cut(s)	598, 654
PspGI	CCWGG	2 cut(s)	598, 654
PspN4I	GGNNCC	1 cut(s)	840
PspPI	GGNCC	1 cut(s)	765
PspPPI	RGGWCCY	1 cut(s)	765
PstNI	CAGNNNCTG	1 cut(s)	503
RsaI	GTAC	3 cut(s)	425, 840, 1131
RsaNI	GTAC	3 cut(s)	424, 839, 1130
RseI	CAYNNNNRTG	4 cut(s)	197, 366, 441, 1121
SapI	GCTCTTC	1 cut(s)	975
SaqAI	TTAA	6 cut(s)	117, 276, 582, 750, 975, 1107
SatI	GCNGC	1 cut(s)	570
Sau3AI	GATC	6 cut(s)	189, 685, 772, 811, 930, 970
Sau96I	GGNCC	1 cut(s)	765
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	2 cut(s)	600, 656
SfaNI	GCATC	4 cut(s)	457, 490, 752, 933
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	1 cut(s)	765
SmiMI	CAYNNNNRTG	4 cut(s)	197, 366, 441, 1121
SmlI	CTYRAG	3 cut(s)	246, 907, 986
SmoI	CTYRAG	3 cut(s)	246, 907, 986
Sse9I	AATT	5 cut(s)	79, 334, 449, 850, 934
SsiI	CCGC	1 cut(s)	1054
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	598, 654
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	5 cut(s)	160, 328, 423, 755, 1102
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	1095
TasI	AATT	5 cut(s)	79, 334, 449, 850, 934
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	4 cut(s)	7, 531, 659, 887
Tru1I	TTAA	6 cut(s)	117, 276, 582, 750, 975, 1107
Tru9I	TTAA	6 cut(s)	117, 276, 582, 750, 975, 1107
TscAI	CASTG	3 cut(s)	403, 1107, 1128
TseFI	GTSAC	2 cut(s)	485, 844
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	2 cut(s)	485, 844
TspDTI	ATGAA	6 cut(s)	17, 249, 276, 462, 530, 869
TspRI	CASTG	3 cut(s)	403, 1107, 1128
Van91I	CCANNNNNTGG	1 cut(s)	655
VpaK11BI	GGWCC	1 cut(s)	765
XapI	RAATTY	3 cut(s)	334, 449, 850
XmiI	GTMKAC	1 cut(s)	791
XspI	CTAG	1 cut(s)	228
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.