RchiOBHm_Chr3g0450151

Gpi-anchor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
1761622 .. 1766034
4413 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41749

Sequence Viewer

Length: 1221 bp
ATGCGGTTCAAGATGTGCAATTTGTTCAATTGGGTAGTGATTATGGCTGCGTTTCTGGTTCTGGGTTCGATCAATGTCTACGCATTTGGTTCTCCTTCTTCTTCTTCTGCAGAGACCACCATGCACACTAACAATTGGGCTGTTCTGGTCTGCACCTCTCGCTTCTGGTTTAATTATCGACACATGGCCAATACTTTATCCCTGTACAGGACGGTTAAGCGACTTGGAATACCTGATGAGAGGATAATACTTATGCTGGCAGATGACATGGCCTGTAATGCTAGAAACAAGTACCCTGCCCAAGTTTTTAATAATGAAAACCACAGACTCAACTTGTATGGAGATAATGTTGAGGTAGATTATCGAGGTTATGAAGTGACGGTTGAAAATTTTTTACGTGTATTGACTGGGCGCCATGAGACTGCTGTTCCAAGATCTAAGCGTCTTTTAAGTGATGAAGGAAGCCACATTCTTTTGTATATGACCGGACATGGAGGAGATGAGTTTTTAAAATTTCAAGACTCAGAAGAGCTCCAGAGTCATGATTTAGCTGATGCAGTGAAGCAAATGAAAGAAAAGCGTAGGTTCAAGGAGCTGCTGATAATGGTGGACACTTGCCAAGCTGCCACTCTCTTCTCTCAGCTTCAGTCACCTGGTGTTTTGGCTATTGGAAGTAGCATGAAAGGAGAAAATTCATACTCGCATCACTTGGACTCTGATGTTGGTGTCTCTGTTGTGGATCGTTTTACATTTTACACTCTTGCATTCTTTGAGAGGCTAAATATGTATGACAATGCTTCCGTGAGCAGCCTTTTTAATTCATATCACCCAAGCTTGTTGATGTCAACTGCATATCACCGGACAGATCTGTACCAGCGTCGCCTTGAAGAGGTACCTGTGACAAACTTCTTTGGATCAGTCATGGAAACAATACATACTGATTCAGCTTATAAAGCCCTTTCAAGGAAAAGTTACAGCAGAGCTGAAATAAATTCGCTCTTTGATCAATCAGCCAATGGTGATAAGAGAACTTTGGCAGATTCAAATGGTCAGGATCAATTCAGTGACCTCAAAAACGAGGATCAACAAGGCGCTTTCAGACATTTGTGGAATACTTTCAATGACAAGGTCGGAAAAATTGAAGATGTGGATTCATTTGTGCGGTACGGTTTGCTAGCCATGGTTCCACTATTGCTACTTCCCACATTGTTATCGTGGTGA

Protein Analysis

406

Amino Acids

46.43

Weight (kDa)

6.12

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 45 - 303 1.8e-45 Peptidase C13 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 951
Acc65I GGTACC 1 cut(s) 892
AccB1I GGYRCC 2 cut(s) 411, 892
AccI GTMKAC 1 cut(s) 78
AciI CCGC 2 cut(s) 4, 1162
AclWI GGATC 4 cut(s) 747, 922, 1062, 1089
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 4 cut(s) 388, 512, 691, 991
AcuI CTGAAG 1 cut(s) 629
AcyI GRCGYC 1 cut(s) 412
AdeI CACNNNGTG 1 cut(s) 656
AfaI GTAC 5 cut(s) 206, 293, 872, 894, 1166
AfiI CCNNNNNNNGG 3 cut(s) 207, 889, 963
AflIII ACRYGT 1 cut(s) 397
AjnI CCWGG 1 cut(s) 652
AluBI AGCT 8 cut(s) 532, 551, 595, 623, 643, 834, 947, 983
AluI AGCT 8 cut(s) 532, 551, 595, 623, 643, 834, 947, 983
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 3 cut(s) 107, 413, 733
AlwI GGATC 4 cut(s) 747, 922, 1062, 1089
AoxI GGCC 2 cut(s) 186, 270
ApeKI GCWGC 4 cut(s) 47, 595, 623, 807
ApoI RAATTY 4 cut(s) 388, 512, 691, 991
Asp700I GAANNNNTTC 1 cut(s) 1115
Asp718I GGTACC 1 cut(s) 892
AspLEI GCGC 2 cut(s) 414, 1094
AsuHPI GGTGA 4 cut(s) 642, 818, 848, 1031
AsuNHI GCTAGC 1 cut(s) 1174
BalI TGGCCA 1 cut(s) 188
BanI GGYRCC 2 cut(s) 411, 892
BanII GRGCYC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 4 cut(s) 34, 582, 610, 819
BciT130I CCWGG 1 cut(s) 654
BclI TGATCA 1 cut(s) 1003
BcoDI GTCTC 3 cut(s) 107, 413, 733
BfaI CTAG 2 cut(s) 282, 1175
BfmI CTRYAG 1 cut(s) 108
BfoI RGCGCY 2 cut(s) 415, 1095
BglII AGATCT 2 cut(s) 434, 865
BisI GCNGC 4 cut(s) 48, 596, 624, 808
BlsI GCNGC 4 cut(s) 49, 597, 625, 809
Bme1390I CCNGG 1 cut(s) 654
BmiI GGNNCC 3 cut(s) 413, 894, 1185
BmrFI CCNGG 1 cut(s) 654
BmrI ACTGGG 1 cut(s) 417
BmsI GCATC 2 cut(s) 544, 712
BmtI GCTAGC 1 cut(s) 1178
BmuI ACTGGG 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 518
BsaAI YACGTR 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 412
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 1179
BsaWI WCCGGW 2 cut(s) 485, 858
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 889, 963
Bse1I ACTGG 1 cut(s) 412
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 1 cut(s) 1179
BseLI CCNNNNNNNGG 3 cut(s) 207, 889, 963
BseMII CTCAG 2 cut(s) 537, 653
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 510
BseXI GCAGC 4 cut(s) 34, 582, 610, 819
BsgI GTGCAG 1 cut(s) 136
BshFI GGCC 2 cut(s) 188, 272
BshNI GGYRCC 2 cut(s) 411, 892
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 2 cut(s) 486, 859
BslI CCNNNNNNNGG 3 cut(s) 207, 889, 963
BsmAI GTCTC 3 cut(s) 107, 413, 733
BsmI GAATGC 1 cut(s) 764
BsnI GGCC 2 cut(s) 188, 272
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 534
Bsp1407I TGTACA 1 cut(s) 204
Bsp143I GATC 8 cut(s) 69, 434, 739, 865, 914, 1003, 1054, 1081
Bsp19I CCATGG 1 cut(s) 1179
BspACI CCGC 2 cut(s) 4, 1162
BspANI GGCC 2 cut(s) 188, 272
BspCNI CTCAG 2 cut(s) 536, 652
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 3 cut(s) 413, 894, 1185
BspMAI CTGCAG 1 cut(s) 112
BspOI GCTAGC 1 cut(s) 1178
BspPI GGATC 4 cut(s) 747, 922, 1062, 1089
BspQI GCTCTTC 1 cut(s) 522
BspT107I GGYRCC 2 cut(s) 411, 892
BspTNI GGTCTC 1 cut(s) 107
BsrGI TGTACA 1 cut(s) 204
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 1179
BssMI GATC 8 cut(s) 69, 434, 739, 865, 914, 1003, 1054, 1081
BssNI GRCGYC 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 1179
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 3 cut(s) 214, 382, 1169
Bst6I CTCTTC 3 cut(s) 522, 638, 882
BstACI GRCGYC 1 cut(s) 412
BstAUI TGTACA 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 398
BstC8I GCNNGC 2 cut(s) 258, 1176
BstDEI CTNAG 3 cut(s) 438, 523, 639
BstDSI CCRYGG 1 cut(s) 1179
BstENI CCTNNNNNAGG 1 cut(s) 887
BstH2I RGCGCY 2 cut(s) 415, 1095
BstHHI GCGC 2 cut(s) 414, 1094
BstKTI GATC 8 cut(s) 72, 437, 742, 868, 917, 1006, 1057, 1084
BstMAI GTCTC 3 cut(s) 107, 413, 733
BstMBI GATC 8 cut(s) 69, 434, 739, 865, 914, 1003, 1054, 1081
BstMWI GCNNNNNNNGC 3 cut(s) 159, 278, 953
BstNI CCWGG 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 652
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 4 cut(s) 34, 582, 610, 819
BstX2I RGATCY 2 cut(s) 434, 865
BstYI RGATCY 2 cut(s) 434, 865
BsuRI GGCC 2 cut(s) 188, 272
BtgI CCRYGG 1 cut(s) 1179
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 2 cut(s) 564, 1069
Cac8I GCNNGC 2 cut(s) 258, 1176
CciI TCATGA 1 cut(s) 541
CfoI GCGC 2 cut(s) 414, 1094
CseI GACGC 2 cut(s) 431, 866
CsiI ACCWGGT 1 cut(s) 652
Csp6I GTAC 5 cut(s) 205, 292, 871, 893, 1165
CviAII CATG 9 cut(s) 121, 184, 268, 416, 491, 542, 679, 922, 1180
CviQI GTAC 5 cut(s) 205, 292, 871, 893, 1165
DdeI CTNAG 3 cut(s) 438, 523, 639
DinI GGCGCC 1 cut(s) 413
DpnI GATC 8 cut(s) 71, 436, 741, 867, 916, 1005, 1056, 1083
DpnII GATC 8 cut(s) 69, 434, 739, 865, 914, 1003, 1054, 1081
DraI TTTAAA 1 cut(s) 510
DraIII CACNNNGTG 1 cut(s) 656
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 3 cut(s) 522, 638, 882
EarI CTCTTC 3 cut(s) 522, 638, 882
Ecl136II GAGCTC 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 1179
Eco24I GRGCYC 1 cut(s) 534
Eco31I GGTCTC 1 cut(s) 107
Eco53kI GAGCTC 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 629
EcoICRI GAGCTC 1 cut(s) 532
EcoNI CCTNNNNNAGG 1 cut(s) 887
EcoRII CCWGG 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 1179
EcoT38I GRGCYC 1 cut(s) 534
EgeI GGCGCC 1 cut(s) 413
EheI GGCGCC 1 cut(s) 413
ErhI CCWWGG 1 cut(s) 1179
FaeI CATG 9 cut(s) 124, 187, 271, 419, 494, 545, 682, 925, 1183
FatI CATG 9 cut(s) 120, 183, 267, 415, 490, 541, 678, 921, 1179
FbaI TGATCA 1 cut(s) 1003
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 4 cut(s) 48, 596, 624, 808
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 4 cut(s) 48, 596, 624, 808
FspBI CTAG 2 cut(s) 282, 1175
GlaI GCGC 2 cut(s) 413, 1093
GluI GCNGC 4 cut(s) 48, 596, 624, 808
GsuI CTGGAG 1 cut(s) 518
HaeII RGCGCY 2 cut(s) 415, 1095
HaeIII GGCC 2 cut(s) 188, 272
HapII CCGG 2 cut(s) 486, 859
HgaI GACGC 2 cut(s) 431, 866
HhaI GCGC 2 cut(s) 414, 1094
Hin1I GRCGYC 1 cut(s) 412
Hin1II CATG 9 cut(s) 124, 187, 271, 419, 494, 545, 682, 925, 1183
Hin6I GCGC 2 cut(s) 412, 1092
HinP1I GCGC 2 cut(s) 412, 1092
HincII GTYRAC 1 cut(s) 846
HindII GTYRAC 1 cut(s) 846
HindIII AAGCTT 1 cut(s) 832
HinfI GANTC 7 cut(s) 327, 521, 538, 713, 941, 1040, 1151
HpaII CCGG 2 cut(s) 486, 859
HphI GGTGA 4 cut(s) 642, 818, 848, 1031
Hpy166II GTNNAC 3 cut(s) 79, 610, 846
Hpy188I TCNGA 4 cut(s) 526, 718, 1100, 1133
Hpy188III TCNNGA 5 cut(s) 10, 518, 535, 542, 1052
Hpy8I GTNNAC 3 cut(s) 79, 610, 846
Hpy99I CGWCG 1 cut(s) 882
HpyAV CCTTC 2 cut(s) 105, 452
HpyCH4III ACNGT 3 cut(s) 214, 382, 1169
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 7 cut(s) 18, 110, 124, 153, 557, 764, 851
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 278, 953
HpyF3I CTNAG 3 cut(s) 438, 523, 639
HpySE526I ACGT 1 cut(s) 397
Hsp92I GRCGYC 1 cut(s) 412
Hsp92II CATG 9 cut(s) 124, 187, 271, 419, 494, 545, 682, 925, 1183
HspAI GCGC 2 cut(s) 412, 1092
KasI GGCGCC 1 cut(s) 411
KpnI GGTACC 1 cut(s) 896
Ksp22I TGATCA 1 cut(s) 1003
Kzo9I GATC 8 cut(s) 69, 434, 739, 865, 914, 1003, 1054, 1081
LguI GCTCTTC 1 cut(s) 522
LmnI GCTCC 2 cut(s) 537, 592
Lsp1109I GCAGC 4 cut(s) 34, 582, 610, 819
LweI GCATC 2 cut(s) 544, 712
MabI ACCWGGT 1 cut(s) 652
MaeI CTAG 2 cut(s) 282, 1175
MaeII ACGT 1 cut(s) 397
MaeIII GTNAC 5 cut(s) 376, 648, 898, 971, 1064
MalI GATC 8 cut(s) 71, 436, 741, 867, 916, 1005, 1056, 1083
MboI GATC 8 cut(s) 69, 434, 739, 865, 914, 1003, 1054, 1081
MboII GAAGA 7 cut(s) 90, 93, 96, 539, 625, 899, 1154
MfeI CAATTG 2 cut(s) 28, 133
MflI RGATCY 2 cut(s) 434, 865
MhlI GDGCHC 1 cut(s) 534
MlsI TGGCCA 1 cut(s) 188
MluNI TGGCCA 1 cut(s) 188
Mly113I GGCGCC 1 cut(s) 412
MlyI GAGTC 4 cut(s) 321, 515, 547, 707
MmeI TCCRAC 1 cut(s) 1111
MnlI CCTC 9 cut(s) 166, 234, 346, 359, 488, 768, 883, 1072, 1079
Mox20I TGGCCA 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 1115
MscI TGGCCA 1 cut(s) 188
MseI TTAA 6 cut(s) 171, 216, 309, 449, 509, 816
Msp20I TGGCCA 1 cut(s) 188
MspI CCGG 2 cut(s) 486, 859
MspR9I CCNGG 1 cut(s) 654
MunI CAATTG 2 cut(s) 28, 133
Mva1269I GAATGC 1 cut(s) 764
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 3 cut(s) 159, 278, 953
NarI GGCGCC 1 cut(s) 412
NcoI CCATGG 1 cut(s) 1179
NdeII GATC 8 cut(s) 69, 434, 739, 865, 914, 1003, 1054, 1081
NheI GCTAGC 1 cut(s) 1174
NlaIII CATG 9 cut(s) 124, 187, 271, 419, 494, 545, 682, 925, 1183
NlaIV GGNNCC 3 cut(s) 413, 894, 1185
NmuCI GTSAC 4 cut(s) 376, 648, 898, 1064
PagI TCATGA 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 522
PctI GAATGC 1 cut(s) 764
PdmI GAANNNNTTC 1 cut(s) 1115
PfeI GAWTC 3 cut(s) 941, 1040, 1151
PflFI GACNNNGTC 1 cut(s) 1127
PkrI GCNGC 4 cut(s) 49, 597, 625, 809
PleI GAGTC 4 cut(s) 321, 515, 546, 707
PluTI GGCGCC 1 cut(s) 415
PpsI GAGTC 4 cut(s) 321, 515, 546, 707
Ppu21I YACGTR 1 cut(s) 398
PsiI TTATAA 1 cut(s) 951
Psp124BI GAGCTC 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 3 cut(s) 413, 894, 1185
PstI CTGCAG 1 cut(s) 112
PsuI RGATCY 2 cut(s) 434, 865
PsyI GACNNNGTC 1 cut(s) 1127
RsaI GTAC 5 cut(s) 206, 293, 872, 894, 1166
RsaNI GTAC 5 cut(s) 205, 292, 871, 893, 1165
SacI GAGCTC 1 cut(s) 534
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 6 cut(s) 171, 216, 309, 449, 509, 816
SatI GCNGC 4 cut(s) 48, 596, 624, 808
Sau3AI GATC 8 cut(s) 69, 434, 739, 865, 914, 1003, 1054, 1081
SchI GAGTC 4 cut(s) 321, 515, 547, 707
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 1 cut(s) 534
SexAI ACCWGGT 1 cut(s) 652
SfaNI GCATC 2 cut(s) 544, 712
SfcI CTRYAG 1 cut(s) 108
SfoI GGCGCC 1 cut(s) 413
SsiI CCGC 2 cut(s) 4, 1162
SspDI GGCGCC 1 cut(s) 411
SspMI CTAG 2 cut(s) 282, 1175
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 1 cut(s) 652
StyI CCWWGG 1 cut(s) 1179
TaaI ACNGT 3 cut(s) 214, 382, 1169
TaiI ACGT 1 cut(s) 400
TaqI TCGA 3 cut(s) 68, 178, 364
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 3 cut(s) 941, 1040, 1151
Tru1I TTAA 6 cut(s) 171, 216, 309, 449, 509, 816
Tru9I TTAA 6 cut(s) 171, 216, 309, 449, 509, 816
TscAI CASTG 2 cut(s) 564, 1069
TseFI GTSAC 4 cut(s) 376, 648, 898, 1064
TseI GCWGC 4 cut(s) 47, 595, 623, 807
Tsp45I GTSAC 4 cut(s) 376, 648, 898, 1064
TspDTI ATGAA 8 cut(s) 330, 387, 471, 584, 684, 695, 810, 1143
TspGWI ACGGA 1 cut(s) 790
TspRI CASTG 2 cut(s) 564, 1069
Tth111I GACNNNGTC 1 cut(s) 1127
XagI CCTNNNNNAGG 1 cut(s) 887
XapI RAATTY 4 cut(s) 388, 512, 691, 991
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 1115
XspI CTAG 2 cut(s) 282, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.