Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006612

Physical Location & Seq

Genomic Coordinates Reverse (-)

1695003 .. 1699655

Gene Structure 4653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG025800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCGCTTCAAGATGTGCAATTTGTTCAATTGGGTAGTGATTATGGCTGCGTTTCTGGTTCTGGGTTCGATCAATGTCTACGCATTTGGTTCTCCTTCTTCTTCTTCTGCAGAGACCACCATGCACACTAACAATTGGGCTGTTCTGGTCTGCACCTCTCGCTTCTGGTTTAATTATCGACACATGGCCAATACTTTATCCCTGTACAGGACGGTTAAGCGACTTGGAATACCTGATGAGAGGATAATACTTATGCTGGCAGATGACATGGCCTGTAATGCTAGAAACAAGTACCCTGCCCAAGTTTTTAATAATGAAAACCACAGACTCAACTTGTATGGAGATAATGTTGAGGTAGATTATCGAGGTTATGAAGTGACGGTTGAAAATTTTTTACGTGTATTGACTGGGCGCCATGAGACTGCTGTTCCAAGATCTAAGCGTCTTTTAAGTGATGAAGGAAGCCACATTCTTTTGTATATGACTGGACATGGAGGAGATGAGTTTTTAAAATTTCAAGACTCAGAAGAGCTCCAGAGTCATGATTTAGCTGATGCTGTGAAACAAATGAAAGAAAAGCGTAGGTTCAAGGAGCTGCTGATAATGGTGGACACTTGCCAAGCTGCCACTCTCTTCTCTCAGCTTCAGTCACCTGGTGTTTTGGCTATTGGAAGTAGCATGAAGGGAGAAAATTCATACTCGCATCACTTGGACTCTGATGTTGGTGTCTCTGTTGTGGATCGTTTTACATTTTACACTCTTTCATTCTTTGAGAGGCTAAATATGTATGACAATGCTTCCGTGAGCAGCCTTTTTAATTCATATCACCCAAGCTTGTTGATGTCAACTGCATATTACCGTACAGATCTGTACCAGCGTCGCCTTGAAGAGGTAATGACATATAGACTTACGTTCTCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003923 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0016787 GO:0019538 GO:0019637 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0034394 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0090407 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Peptidase_C13

Protein Analysis

307

Amino Acids

35.4

Weight (kDa)

6.55

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C13	PF01650	45 - 259	1.9e-45	Peptidase C13 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08750 AT1G08750 AT1G08750
fragaria_vesca	FvH4_5g04770 FvH4_5g04770 FvH4_5g04770 FvH4_6g02380 FvH4_6g02380 FvH4_6g02380 FvH4_6g02400
malus_domestica	MD04G1227700.v1.1
prunus_persica	Prupe.6G347300_v2.0.a1 Prupe.6G347300_v2.0.a1
pyrus_communis	pycom04g20120
rosa_chinensis	RchiOBHm_Chr3g0450151
rosa_laevigata	RLG00000025751
rosa_multiflora	Rmu_sc0010184.1_g000006 Rmu_sc0010184.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427910
rosa_rugosa	Rorug02G0625900
rosa_samantha	Rh3AG025200 Rh3BG025800 Rh3BG323000 Rh3CG024700 Rh3DG025800
rosa_wichuraiana	Rw3G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	78
AclWI	GGATC	1 cut(s)	747
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	3 cut(s)	388, 512, 691
AcuI	CTGAAG	1 cut(s)	629
AcyI	GRCGYC	1 cut(s)	412
AdeI	CACNNNGTG	1 cut(s)	656
AfaI	GTAC	4 cut(s)	206, 293, 862, 872
AfiI	CCNNNNNNNGG	2 cut(s)	207, 889
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	6 cut(s)	10, 28, 386, 518, 589, 887
AjnI	CCWGG	1 cut(s)	652
AluBI	AGCT	6 cut(s)	532, 551, 595, 623, 643, 834
AluI	AGCT	6 cut(s)	532, 551, 595, 623, 643, 834
Alw21I	GWGCWC	1 cut(s)	534
Alw26I	GTCTC	3 cut(s)	107, 413, 733
AlwI	GGATC	1 cut(s)	747
AoxI	GGCC	2 cut(s)	186, 270
ApeKI	GCWGC	4 cut(s)	47, 595, 623, 807
ApoI	RAATTY	3 cut(s)	388, 512, 691
AspLEI	GCGC	2 cut(s)	6, 414
AsuHPI	GGTGA	2 cut(s)	642, 818
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	534
BbvI	GCAGC	4 cut(s)	34, 582, 610, 819
BciT130I	CCWGG	1 cut(s)	654
BcoDI	GTCTC	3 cut(s)	107, 413, 733
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	415
BglII	AGATCT	2 cut(s)	434, 865
BisI	GCNGC	4 cut(s)	48, 596, 624, 808
BlsI	GCNGC	4 cut(s)	49, 597, 625, 809
Bme1390I	CCNGG	1 cut(s)	654
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	1 cut(s)	654
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	544, 712
BmuI	ACTGGG	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	518
BsaAI	YACGTR	1 cut(s)	398
BsaHI	GRCGYC	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 889
Bse1I	ACTGG	2 cut(s)	412, 490
BseBI	CCWGG	1 cut(s)	654
BseLI	CCNNNNNNNGG	2 cut(s)	207, 889
BseMII	CTCAG	2 cut(s)	537, 653
BseNI	ACTGG	2 cut(s)	412, 490
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	4 cut(s)	34, 582, 610, 819
BsgI	GTGCAG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	188, 272
BshNI	GGYRCC	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	534
BslI	CCNNNNNNNGG	2 cut(s)	207, 889
BsmAI	GTCTC	3 cut(s)	107, 413, 733
BsnI	GGCC	2 cut(s)	188, 272
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	4 cut(s)	69, 434, 739, 865
BspANI	GGCC	2 cut(s)	188, 272
BspCNI	CTCAG	2 cut(s)	536, 652
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	413
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	747
BspQI	GCTCTTC	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	412, 490
BssMI	GATC	4 cut(s)	69, 434, 739, 865
BssNI	GRCGYC	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	3 cut(s)	214, 382, 860
Bst6I	CTCTTC	3 cut(s)	522, 638, 882
BstACI	GRCGYC	1 cut(s)	412
BstAUI	TGTACA	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	3 cut(s)	438, 523, 639
BstENI	CCTNNNNNAGG	1 cut(s)	887
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	2 cut(s)	6, 414
BstKTI	GATC	4 cut(s)	72, 437, 742, 868
BstMAI	GTCTC	3 cut(s)	107, 413, 733
BstMBI	GATC	4 cut(s)	69, 434, 739, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 278
BstNI	CCWGG	1 cut(s)	654
BstSCI	CCNGG	1 cut(s)	652
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	4 cut(s)	34, 582, 610, 819
BstX2I	RGATCY	2 cut(s)	434, 865
BstYI	RGATCY	2 cut(s)	434, 865
BsuRI	GGCC	2 cut(s)	188, 272
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	2 cut(s)	6, 414
CseI	GACGC	2 cut(s)	431, 866
CsiI	ACCWGGT	1 cut(s)	652
Csp6I	GTAC	4 cut(s)	205, 292, 861, 871
CviAII	CATG	7 cut(s)	121, 184, 268, 416, 491, 542, 679
CviQI	GTAC	4 cut(s)	205, 292, 861, 871
DdeI	CTNAG	3 cut(s)	438, 523, 639
DinI	GGCGCC	1 cut(s)	413
DpnI	GATC	4 cut(s)	71, 436, 741, 867
DpnII	GATC	4 cut(s)	69, 434, 739, 865
DraI	TTTAAA	1 cut(s)	510
DraIII	CACNNNGTG	1 cut(s)	656
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	3 cut(s)	522, 638, 882
EarI	CTCTTC	3 cut(s)	522, 638, 882
Ecl136II	GAGCTC	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	629
EcoICRI	GAGCTC	1 cut(s)	532
EcoNI	CCTNNNNNAGG	1 cut(s)	887
EcoRII	CCWGG	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	534
EgeI	GGCGCC	1 cut(s)	413
EheI	GGCGCC	1 cut(s)	413
FaeI	CATG	7 cut(s)	124, 187, 271, 419, 494, 545, 682
FatI	CATG	7 cut(s)	120, 183, 267, 415, 490, 541, 678
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	4 cut(s)	48, 596, 624, 808
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	4 cut(s)	48, 596, 624, 808
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	2 cut(s)	5, 413
GluI	GCNGC	4 cut(s)	48, 596, 624, 808
GsuI	CTGGAG	1 cut(s)	518
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	188, 272
HgaI	GACGC	2 cut(s)	431, 866
HhaI	GCGC	2 cut(s)	6, 414
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	7 cut(s)	124, 187, 271, 419, 494, 545, 682
Hin6I	GCGC	2 cut(s)	4, 412
HinP1I	GCGC	2 cut(s)	4, 412
HincII	GTYRAC	1 cut(s)	846
HindII	GTYRAC	1 cut(s)	846
HindIII	AAGCTT	1 cut(s)	832
HinfI	GANTC	4 cut(s)	327, 521, 538, 713
HphI	GGTGA	2 cut(s)	642, 818
Hpy166II	GTNNAC	3 cut(s)	79, 610, 846
Hpy188I	TCNGA	3 cut(s)	526, 718, 923
Hpy188III	TCNNGA	4 cut(s)	10, 518, 535, 542
Hpy8I	GTNNAC	3 cut(s)	79, 610, 846
Hpy99I	CGWCG	1 cut(s)	882
HpyAV	CCTTC	3 cut(s)	105, 452, 676
HpyCH4III	ACNGT	3 cut(s)	214, 382, 860
HpyCH4IV	ACGT	2 cut(s)	397, 911
HpyCH4V	TGCA	5 cut(s)	18, 110, 124, 153, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 278
HpyF3I	CTNAG	3 cut(s)	438, 523, 639
HpySE526I	ACGT	2 cut(s)	397, 911
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	7 cut(s)	124, 187, 271, 419, 494, 545, 682
HspAI	GCGC	2 cut(s)	4, 412
KasI	GGCGCC	1 cut(s)	411
Kzo9I	GATC	4 cut(s)	69, 434, 739, 865
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	2 cut(s)	537, 592
Lsp1109I	GCAGC	4 cut(s)	34, 582, 610, 819
LweI	GCATC	2 cut(s)	544, 712
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	2 cut(s)	397, 911
MaeIII	GTNAC	2 cut(s)	376, 648
MalI	GATC	4 cut(s)	71, 436, 741, 867
MboI	GATC	4 cut(s)	69, 434, 739, 865
MboII	GAAGA	6 cut(s)	90, 93, 96, 539, 625, 899
MfeI	CAATTG	2 cut(s)	28, 133
MflI	RGATCY	2 cut(s)	434, 865
MhlI	GDGCHC	1 cut(s)	534
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	8 cut(s)	19, 28, 133, 172, 388, 512, 691, 817
MluNI	TGGCCA	1 cut(s)	188
Mly113I	GGCGCC	1 cut(s)	412
MlyI	GAGTC	4 cut(s)	321, 515, 547, 707
MnlI	CCTC	7 cut(s)	166, 234, 346, 359, 488, 768, 883
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	6 cut(s)	171, 216, 309, 449, 509, 816
Msp20I	TGGCCA	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	654
MunI	CAATTG	2 cut(s)	28, 133
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	2 cut(s)	159, 278
NarI	GGCGCC	1 cut(s)	412
NdeII	GATC	4 cut(s)	69, 434, 739, 865
NlaIII	CATG	7 cut(s)	124, 187, 271, 419, 494, 545, 682
NlaIV	GGNNCC	1 cut(s)	413
NmuCI	GTSAC	2 cut(s)	376, 648
PagI	TCATGA	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	522
PkrI	GCNGC	4 cut(s)	49, 597, 625, 809
PleI	GAGTC	4 cut(s)	321, 515, 546, 707
PluTI	GGCGCC	1 cut(s)	415
PpsI	GAGTC	4 cut(s)	321, 515, 546, 707
Ppu21I	YACGTR	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	112
PsuI	RGATCY	2 cut(s)	434, 865
RsaI	GTAC	4 cut(s)	206, 293, 862, 872
RsaNI	GTAC	4 cut(s)	205, 292, 861, 871
SacI	GAGCTC	1 cut(s)	534
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	6 cut(s)	171, 216, 309, 449, 509, 816
SatI	GCNGC	4 cut(s)	48, 596, 624, 808
Sau3AI	GATC	4 cut(s)	69, 434, 739, 865
SchI	GAGTC	4 cut(s)	321, 515, 547, 707
ScrFI	CCNGG	1 cut(s)	654
SduI	GDGCHC	1 cut(s)	534
SexAI	ACCWGGT	1 cut(s)	652
SfaNI	GCATC	2 cut(s)	544, 712
SfcI	CTRYAG	1 cut(s)	108
SfoI	GGCGCC	1 cut(s)	413
Sse9I	AATT	8 cut(s)	19, 28, 133, 172, 388, 512, 691, 817
SspDI	GGCGCC	1 cut(s)	411
SspMI	CTAG	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	652
TaaI	ACNGT	3 cut(s)	214, 382, 860
TaiI	ACGT	2 cut(s)	400, 914
TaqI	TCGA	3 cut(s)	68, 178, 364
TasI	AATT	8 cut(s)	19, 28, 133, 172, 388, 512, 691, 817
TatI	WGTACW	1 cut(s)	204
Tru1I	TTAA	6 cut(s)	171, 216, 309, 449, 509, 816
Tru9I	TTAA	6 cut(s)	171, 216, 309, 449, 509, 816
TseFI	GTSAC	2 cut(s)	376, 648
TseI	GCWGC	4 cut(s)	47, 595, 623, 807
Tsp45I	GTSAC	2 cut(s)	376, 648
TspDTI	ATGAA	8 cut(s)	330, 387, 471, 584, 684, 695, 753, 810
TspGWI	ACGGA	1 cut(s)	790
XagI	CCTNNNNNAGG	1 cut(s)	887
XapI	RAATTY	3 cut(s)	388, 512, 691
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.