Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Reverse (-)

74190998 .. 74195530

Gene Structure 4533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0625900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2031 bp

ATGCACTTTGATATGGCGCTGTTCCAGTCCAATCTTGGCTCTCTGTGCCGCAGTCACTTGCCCACTCTCTCCACAAAACCGAAACCCGAAATTCCAATCCACAGCATCAGCGTTGCTTCAAAACGACGCCGCTTCGGCATCCGAAACAACTCGCGCCGGTTCTTCTTTTCGCCGGAAAACGGCATTGCTACTCCGGTGGCGGCGGCCGTCAATTGGTGGAGCCTAACCGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGCAAATCACGGCGGCGAAGCCAGTCACGATTCTGCGTGCTGTTCATCGAATGTGGAATTTGATCGAGACTGATAGATGGATTGTGTTCGTTGCTTTTGGTTCACTGATTATAGCAGCGCTTTCGGAGATCTCAATACCGCGGATATTGACGGAGTCTGTGTTTTGTGCTCAAAGTGGGAATGCTGCGGTGTTCTTCAGGAACTCGAAGCTTCTAGCAGTGTTGTGTATCACTTCAGGGATATGCAGTGGCCTGCGAAGTGGTTGTTTTGGGATTGCAAACATTGTGTTGGTTAAGCGCCTCAGGGAAACCCTATACTCAGTTGTTCTTGTCCAGGATATATCCTTTTTCGACAGAGAATCAGTTGGTGATTTGACAAGCAGACTTGGGGCAGATTGTCAACGATTATCGCTTGTCATTGCAAATGATATTAACTTGATATTACGTAATGGGCTTCAGGGAACTGGTGCACTGATCAATCTGCTTATATTATCTTGGCCTCTTGCATTATCAGCACTGGTTATATGCGGTGTTTTATCTGTGATTTTTCTTCTTTATAGCAAGTACCAAAAGAAAGCTGCAAAATTAACCCAAGACTTCACTGCTGGGGCCAATGAAGTTGCACAAGAGACACTTTCTCTGATGAGAACAGTCCGGGTTTTTGGAACAGAAAGGAAAGAAATTGGAAGGTTCAAGGGATGGCTAGACAAGGTAGCGTTTATAAACATTCGAGAGAGTATGGCTCATGGGTTCTGGAGTATGAGTTTTCATACCCTGTATCGGTCAACACAGGTTATTGCTGTGGTGTTAGGAGGCATTTCTATTATGAGTGGTCGTGTATCACCTGAGCAACTAACTAAGTATGTATTGTACTGTGAGTGGTTAATTTATGCAACTTGGAGGGTCACAGACAATTTATCATCATTAGTCCAGTCTGTTGGAGCAAGTGAAAAGGTTCTCCAGTTGATGGACTTGTTGCCTAGCGACCAGTTCGTATCAAAAGGTGTAAAGTTGCAGAGGGTAATGGGACATATTCAGTTCGTAAACGTTTCTTTTCACTATCCTTCTAGGGCAAAAGTCGCCATTCTAGAGGACATAAATATTTCCATACAAGCAAATGAAGTGGTTGCAATTGTTGGTCTGAGTGGTAGTGGAAAAAGCACATTAGTCAATCTCTTGCTTCGTCTTTATGAACCAATTAATGGTCAGATTAATATTGATGGTATCCCTATCAGAGAGTTGGATATCAGGTGGCTGAGAGGGAAAGTTGGATTTGTGTCGCAGGAACCAAATCTATTTCACATGACCATCAAGTCAAACATTAAATATGGTTGCTCCGATGATATTAAGGAGGAAGATATAAAATCGGCTGCAAAGCTAGCTTATGCTCATAACTTCATCTCATCTCTTCCTGACGGATATGATACCCTAGTTGATGATAACTTACTCAGCGGTGGGCAAAAGCAGCGGATTGCGATTGCTAGGGCCATTCTTAGAGACCCAGCTATATTAATCCTCGATGAAGCTACCAGTGCCTTAGATTCTGAAGCCGAACATCACATTAAGGGGGTTCTTCATGCAATGAGGAATGATGTTAAAGCAAGAAGAACCGTCATTGTCATTGCACATAGGCTTTCAACCATAGAAGCTGCTGACAGAACCATCGTAATGGACGGAGGCCGAGTCACTGAGATGGGTGAGCATGCAGAACTCCTCAAGAAGGATGGGGTCTATGCAAAATTGATTAGAGCTCAAACAAATGTTTGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

676

Amino Acids

75.12

Weight (kDa)

8.79

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	152 - 379	7.4e-35	ABC transporter transmembrane region
ABC_tran	PF00005	449 - 597	2.7e-33	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	980
AasI	GACNNNNNNGTC	1 cut(s)	1570
AccB7I	CCANNNNNTGG	2 cut(s)	1225, 1460
AccII	CGCG	2 cut(s)	154, 400
AclI	AACGTT	1 cut(s)	1305
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	90, 316
AcuI	CTGAAG	4 cut(s)	439, 477, 698, 1824
AcyI	GRCGYC	1 cut(s)	127
AfaI	GTAC	2 cut(s)	824, 1130
AfeI	AGCGCT	1 cut(s)	378
AfiI	CCNNNNNNNGG	7 cut(s)	179, 213, 229, 1038, 1225, 1460, 1978
AgsI	TTSAA	3 cut(s)	120, 952, 1896
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	8 cut(s)	469, 836, 1636, 1640, 1763, 1784, 1907, 2009
AluI	AGCT	8 cut(s)	469, 836, 1636, 1640, 1763, 1784, 1907, 2009
Alw21I	GWGCWC	3 cut(s)	430, 730, 2011
Alw26I	GTCTC	3 cut(s)	320, 881, 1749
Alw44I	GTGCAC	1 cut(s)	726
Aor51HI	AGCGCT	1 cut(s)	378
AoxI	GGCC	6 cut(s)	204, 508, 755, 867, 1743, 1936
ApaLI	GTGCAC	1 cut(s)	726
ApeKI	GCWGC	6 cut(s)	374, 443, 836, 1628, 1723, 1907
ApoI	RAATTY	2 cut(s)	90, 316
AseI	ATTAAT	3 cut(s)	1458, 1470, 1769
Asp700I	GAANNNNTTC	1 cut(s)	1212
AspLEI	GCGC	4 cut(s)	19, 156, 379, 558
AspS9I	GGNCC	2 cut(s)	867, 1743
AsuC2I	CCSGG	1 cut(s)	914
AsuHPI	GGTGA	3 cut(s)	638, 1092, 1967
AsuNHI	GCTAGC	1 cut(s)	1636
AxyI	CCTNAGG	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	730
BaeI	ACNNNNGTAYC	2 cut(s)	1674, 1707
BanII	GRGCYC	1 cut(s)	2011
Bbv12I	GWGCWC	3 cut(s)	430, 730, 2011
BbvI	GCAGC	6 cut(s)	386, 430, 823, 1615, 1735, 1894
BccI	CCATC	8 cut(s)	330, 951, 1219, 1472, 1574, 1928, 1945, 1976
BceAI	ACGGC	3 cut(s)	191, 196, 285
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BciT130I	CCWGG	1 cut(s)	593
BciVI	GTATCC	1 cut(s)	1493
BclI	TGATCA	1 cut(s)	732
BcnI	CCSGG	1 cut(s)	914
BcoDI	GTCTC	3 cut(s)	320, 881, 1749
BfaI	CTAG	8 cut(s)	473, 962, 1239, 1326, 1346, 1637, 1688, 1740
BfoI	RGCGCY	3 cut(s)	20, 380, 559
BfuI	GTATCC	1 cut(s)	1493
BglI	GCCNNNNNGGC	1 cut(s)	135
BglII	AGATCT	1 cut(s)	387
Bme1390I	CCNGG	2 cut(s)	593, 914
BmgT120I	GGNCC	2 cut(s)	867, 1743
BmiI	GGNNCC	3 cut(s)	221, 868, 1545
BmrFI	CCNGG	2 cut(s)	593, 914
BmsI	GCATC	2 cut(s)	114, 147
BmtI	GCTAGC	1 cut(s)	1640
BplI	GAGNNNNNCTC	2 cut(s)	985, 1017
BpmI	CTGGAG	2 cut(s)	1033, 1202
Bpu10I	CCTNAGC	1 cut(s)	1104
BpuEI	CTTGAG	1 cut(s)	1958
BpuMI	CCSGG	1 cut(s)	914
BsaAI	YACGTR	1 cut(s)	704
BsaHI	GRCGYC	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	1749
BsaJI	CCNNGG	2 cut(s)	228, 398
BsaWI	WCCGGW	1 cut(s)	193
BsaXI	ACNNNNNCTCC	6 cut(s)	404, 434, 1006, 1036, 1926, 1956
Bsc4I	CCNNNNNNNGG	7 cut(s)	179, 213, 229, 1038, 1225, 1460, 1978
Bse118I	RCCGGY	1 cut(s)	156
Bse1I	ACTGG	8 cut(s)	25, 281, 727, 780, 1189, 1219, 1246, 1788
Bse21I	CCTNAGG	1 cut(s)	560
Bse3DI	GCAATG	4 cut(s)	183, 675, 1845, 1878
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	228, 398
BseGI	GGATG	3 cut(s)	138, 962, 1987
BseLI	CCNNNNNNNGG	7 cut(s)	179, 213, 229, 1038, 1225, 1460, 1978
BseMI	GCAATG	4 cut(s)	183, 675, 1845, 1878
BseMII	CTCAG	7 cut(s)	574, 591, 1095, 1391, 1505, 1720, 1938
BseNI	ACTGG	8 cut(s)	25, 281, 727, 780, 1189, 1219, 1246, 1788
BseRI	GAGGAG	9 cut(s)	245, 248, 251, 254, 257, 260, 263, 266, 1961
BseSI	GKGCMC	1 cut(s)	730
BseX3I	CGGCCG	1 cut(s)	204
BseXI	GCAGC	6 cut(s)	386, 430, 823, 1615, 1735, 1894
BseYI	CCCAGC	2 cut(s)	863, 1759
Bsh1236I	CGCG	2 cut(s)	154, 400
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	6 cut(s)	206, 510, 757, 869, 1745, 1938
BsiEI	CGRYCG	1 cut(s)	207
BsiHKAI	GWGCWC	3 cut(s)	430, 730, 2011
BsiSI	CCGG	4 cut(s)	157, 173, 194, 913
BslFI	GGGAC	1 cut(s)	1299
BslI	CCNNNNNNNGG	7 cut(s)	179, 213, 229, 1038, 1225, 1460, 1978
BsmAI	GTCTC	3 cut(s)	320, 881, 1749
BsmFI	GGGAC	1 cut(s)	1299
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	6 cut(s)	206, 510, 757, 869, 1745, 1938
Bso31I	GGTCTC	1 cut(s)	1749
Bsp1286I	GDGCHC	3 cut(s)	430, 730, 2011
Bsp143I	GATC	3 cut(s)	321, 387, 732
BspANI	GGCC	6 cut(s)	206, 510, 757, 869, 1745, 1938
BspCNI	CTCAG	7 cut(s)	573, 590, 1096, 1392, 1506, 1719, 1939
BspFNI	CGCG	2 cut(s)	154, 400
BspLI	GGNNCC	3 cut(s)	221, 868, 1545
BspOI	GCTAGC	1 cut(s)	1640
BspTNI	GGTCTC	1 cut(s)	1749
BsrDI	GCAATG	4 cut(s)	183, 675, 1845, 1878
BsrFI	RCCGGY	1 cut(s)	156
BsrI	ACTGG	8 cut(s)	25, 281, 727, 780, 1189, 1219, 1246, 1788
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	228, 398
BssMI	GATC	3 cut(s)	321, 387, 732
BssNI	GRCGYC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	3 cut(s)	910, 1133, 1870
Bst6I	CTCTTC	1 cut(s)	1671
BstACI	GRCGYC	1 cut(s)	127
BstBAI	YACGTR	1 cut(s)	704
BstC8I	GCNNGC	4 cut(s)	297, 512, 1638, 1962
BstDSI	CCRYGG	1 cut(s)	398
BstENI	CCTNNNNNAGG	2 cut(s)	227, 1976
BstF5I	GGATG	3 cut(s)	138, 962, 1987
BstFNI	CGCG	2 cut(s)	154, 400
BstH2I	RGCGCY	3 cut(s)	20, 380, 559
BstHHI	GCGC	4 cut(s)	19, 156, 379, 558
BstKTI	GATC	3 cut(s)	324, 390, 735
BstMAI	GTCTC	3 cut(s)	320, 881, 1749
BstMBI	GATC	3 cut(s)	321, 387, 732
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	7 cut(s)	45, 135, 770, 1337, 1637, 1723, 1790
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	1 cut(s)	1964
BstSCI	CCNGG	2 cut(s)	591, 912
BstSLI	GKGCMC	1 cut(s)	730
BstSNI	TACGTA	1 cut(s)	704
BstUI	CGCG	2 cut(s)	154, 400
BstV1I	GCAGC	6 cut(s)	386, 430, 823, 1615, 1735, 1894
BstX2I	RGATCY	1 cut(s)	387
BstXI	CCANNNNNNTGG	2 cut(s)	1196, 1927
BstYI	RGATCY	1 cut(s)	387
BstZI	CGGCCG	1 cut(s)	204
Bsu36I	CCTNAGG	1 cut(s)	560
BsuI	GTATCC	1 cut(s)	1493
BsuRI	GGCC	6 cut(s)	206, 510, 757, 869, 1745, 1938
BtgI	CCRYGG	1 cut(s)	398
BtsCI	GGATG	3 cut(s)	138, 962, 1987
BtsI	GCAGTG	3 cut(s)	483, 511, 858
BtsIMutI	CAGTG	8 cut(s)	362, 483, 511, 728, 773, 858, 1795, 1944
Cac8I	GCNNGC	4 cut(s)	297, 512, 1638, 1962
CfoI	GCGC	4 cut(s)	19, 156, 379, 558
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	867, 1743
Cfr42I	CCGCGG	1 cut(s)	401
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	823, 1129
CspCI	CAANNNNNGTGG	2 cut(s)	1362, 1397
CviAII	CATG	4 cut(s)	1004, 1561, 1835, 1961
CviQI	GTAC	2 cut(s)	823, 1129
DpnI	GATC	3 cut(s)	323, 389, 734
DpnII	GATC	3 cut(s)	321, 387, 732
DrdI	GACNNNNNNGTC	1 cut(s)	1570
DseDI	GACNNNNNNGTC	1 cut(s)	1570
EaeI	YGGCCR	1 cut(s)	204
EagI	CGGCCG	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	1671
EarI	CTCTTC	1 cut(s)	1671
Ecl136II	GAGCTC	1 cut(s)	2009
EclXI	CGGCCG	1 cut(s)	204
Eco105I	TACGTA	1 cut(s)	704
Eco24I	GRGCYC	1 cut(s)	2011
Eco31I	GGTCTC	1 cut(s)	1749
Eco32I	GATATC	1 cut(s)	1504
Eco47III	AGCGCT	1 cut(s)	378
Eco52I	CGGCCG	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	2009
Eco57I	CTGAAG	4 cut(s)	439, 477, 698, 1824
Eco81I	CCTNAGG	1 cut(s)	560
EcoICRI	GAGCTC	1 cut(s)	2009
EcoNI	CCTNNNNNAGG	2 cut(s)	227, 1976
EcoRII	CCWGG	1 cut(s)	591
EcoRV	GATATC	1 cut(s)	1504
EcoT38I	GRGCYC	1 cut(s)	2011
FaeI	CATG	4 cut(s)	1007, 1564, 1838, 1964
FalI	AAGNNNNNCTT	2 cut(s)	876, 908
FaqI	GGGAC	1 cut(s)	1299
FatI	CATG	4 cut(s)	1003, 1560, 1834, 1960
FbaI	TGATCA	1 cut(s)	732
FokI	GGATG	3 cut(s)	125, 969, 1994
FriOI	GRGCYC	1 cut(s)	2011
FspBI	CTAG	8 cut(s)	473, 962, 1239, 1326, 1346, 1637, 1688, 1740
GlaI	GCGC	4 cut(s)	18, 155, 378, 557
GsaI	CCCAGC	2 cut(s)	867, 1763
GsuI	CTGGAG	2 cut(s)	1033, 1202
HaeII	RGCGCY	3 cut(s)	20, 380, 559
HaeIII	GGCC	6 cut(s)	206, 510, 757, 869, 1745, 1938
HapII	CCGG	4 cut(s)	157, 173, 194, 913
HgaI	GACGC	1 cut(s)	135
HhaI	GCGC	4 cut(s)	19, 156, 379, 558
Hin1I	GRCGYC	1 cut(s)	127
Hin1II	CATG	4 cut(s)	1007, 1564, 1838, 1964
Hin6I	GCGC	4 cut(s)	17, 154, 377, 556
HinP1I	GCGC	4 cut(s)	17, 154, 377, 556
HincII	GTYRAC	2 cut(s)	659, 1044
HindII	GTYRAC	2 cut(s)	659, 1044
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	5 cut(s)	289, 413, 617, 1799, 1941
HpaII	CCGG	4 cut(s)	157, 173, 194, 913
HphI	GGTGA	3 cut(s)	638, 1092, 1967
Hpy166II	GTNNAC	5 cut(s)	362, 659, 728, 1044, 1303
Hpy188I	TCNGA	8 cut(s)	143, 385, 900, 1401, 1467, 1493, 1597, 1804
Hpy188III	TCNNGA	8 cut(s)	286, 325, 457, 989, 1012, 1346, 1670, 1975
Hpy8I	GTNNAC	5 cut(s)	362, 659, 728, 1044, 1303
Hpy99I	CGWCG	1 cut(s)	129
HpyAV	CCTTC	3 cut(s)	939, 1332, 1972
HpyCH4III	ACNGT	3 cut(s)	910, 1133, 1870
HpyCH4IV	ACGT	2 cut(s)	703, 1305
HpyF10VI	GCNNNNNNNGC	7 cut(s)	45, 135, 770, 1337, 1637, 1723, 1790
HpySE526I	ACGT	2 cut(s)	703, 1305
Hsp92I	GRCGYC	1 cut(s)	127
Hsp92II	CATG	4 cut(s)	1007, 1564, 1838, 1964
HspAI	GCGC	4 cut(s)	17, 154, 377, 556
Ksp22I	TGATCA	1 cut(s)	732
KspI	CCGCGG	1 cut(s)	401
Kzo9I	GATC	3 cut(s)	321, 387, 732
LmnI	GCTCC	3 cut(s)	219, 1199, 1598
Lsp1109I	GCAGC	6 cut(s)	386, 430, 823, 1615, 1735, 1894
LweI	GCATC	2 cut(s)	114, 147
MaeI	CTAG	8 cut(s)	473, 962, 1239, 1326, 1346, 1637, 1688, 1740
MaeII	ACGT	2 cut(s)	703, 1305
MaeIII	GTNAC	4 cut(s)	53, 283, 1162, 1942
MalI	GATC	3 cut(s)	323, 389, 734
MboI	GATC	3 cut(s)	321, 387, 732
MboII	GAAGA	7 cut(s)	154, 445, 800, 1625, 1658, 1823, 1875
MfeI	CAATTG	2 cut(s)	211, 1389
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	3 cut(s)	430, 730, 2011
MlyI	GAGTC	2 cut(s)	422, 1950
MmeI	TCCRAC	3 cut(s)	1177, 1479, 1507
MroXI	GAANNNNTTC	1 cut(s)	1212
MslI	CAYNNNNRTG	2 cut(s)	1925, 1949
MspA1I	CMGCKG	3 cut(s)	400, 1710, 1726
MspI	CCGG	4 cut(s)	157, 173, 194, 913
MspR9I	CCNGG	2 cut(s)	593, 914
MunI	CAATTG	2 cut(s)	211, 1389
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	593
MvnI	CGCG	2 cut(s)	154, 400
MwoI	GCNNNNNNNGC	7 cut(s)	45, 135, 770, 1337, 1637, 1723, 1790
NciI	CCSGG	1 cut(s)	914
NdeII	GATC	3 cut(s)	321, 387, 732
NheI	GCTAGC	1 cut(s)	1636
NlaIII	CATG	4 cut(s)	1007, 1564, 1838, 1964
NlaIV	GGNNCC	3 cut(s)	221, 868, 1545
NmeAIII	GCCGAG	1 cut(s)	1964
NmuCI	GTSAC	4 cut(s)	53, 283, 1162, 1942
NspI	RCATGY	1 cut(s)	1964
PaeI	GCATGC	1 cut(s)	1964
PctI	GAATGC	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	1212
PfeI	GAWTC	3 cut(s)	289, 617, 1799
PflFI	GACNNNGTC	1 cut(s)	412
PflMI	CCANNNNNTGG	2 cut(s)	1225, 1460
PfoI	TCCNGGA	1 cut(s)	591
PleI	GAGTC	2 cut(s)	421, 1949
PpsI	GAGTC	2 cut(s)	421, 1949
Ppu21I	YACGTR	1 cut(s)	704
PshBI	ATTAAT	3 cut(s)	1458, 1470, 1769
PsiI	TTATAA	1 cut(s)	980
Psp124BI	GAGCTC	1 cut(s)	2011
Psp1406I	AACGTT	1 cut(s)	1305
Psp6I	CCWGG	1 cut(s)	591
PspFI	CCCAGC	2 cut(s)	863, 1759
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	3 cut(s)	221, 868, 1545
PspPI	GGNCC	2 cut(s)	867, 1743
PsuI	RGATCY	1 cut(s)	387
PsyI	GACNNNGTC	1 cut(s)	412
RsaI	GTAC	2 cut(s)	824, 1130
RsaNI	GTAC	2 cut(s)	823, 1129
RseI	CAYNNNNRTG	2 cut(s)	1925, 1949
SacI	GAGCTC	1 cut(s)	2011
SacII	CCGCGG	1 cut(s)	401
Sau3AI	GATC	3 cut(s)	321, 387, 732
Sau96I	GGNCC	2 cut(s)	867, 1743
SchI	GAGTC	2 cut(s)	422, 1950
ScrFI	CCNGG	2 cut(s)	593, 914
SduI	GDGCHC	3 cut(s)	430, 730, 2011
SfaNI	GCATC	2 cut(s)	114, 147
Sfr303I	CCGCGG	1 cut(s)	401
SgrBI	CCGCGG	1 cut(s)	401
SmiMI	CAYNNNNRTG	2 cut(s)	1925, 1949
SmlI	CTYRAG	1 cut(s)	1973
SmoI	CTYRAG	1 cut(s)	1973
SnaBI	TACGTA	1 cut(s)	704
SphI	GCATGC	1 cut(s)	1964
SspI	AATATT	2 cut(s)	1360, 1474
SspMI	CTAG	8 cut(s)	473, 962, 1239, 1326, 1346, 1637, 1688, 1740
SstI	GAGCTC	1 cut(s)	2011
StyD4I	CCNGG	2 cut(s)	591, 912
TaaI	ACNGT	3 cut(s)	910, 1133, 1870
TaiI	ACGT	2 cut(s)	706, 1308
TaqI	TCGA	6 cut(s)	307, 324, 464, 609, 988, 1776
TaqII	GACCGA	1 cut(s)	1029
TatI	WGTACW	1 cut(s)	1128
TauI	GCSGC	5 cut(s)	51, 132, 203, 206, 275
TfiI	GAWTC	3 cut(s)	289, 617, 1799
TscAI	CASTG	8 cut(s)	369, 483, 511, 735, 780, 865, 1795, 1951
TseFI	GTSAC	4 cut(s)	53, 283, 1162, 1942
TseI	GCWGC	6 cut(s)	374, 443, 836, 1628, 1723, 1907
Tsp45I	GTSAC	4 cut(s)	53, 283, 1162, 1942
TspDTI	ATGAA	8 cut(s)	293, 888, 1016, 1392, 1464, 1645, 1794, 1823
TspGWI	ACGGA	3 cut(s)	425, 1689, 1947
TspRI	CASTG	8 cut(s)	369, 483, 511, 735, 780, 865, 1795, 1951
Tth111I	GACNNNGTC	1 cut(s)	412
Van91I	CCANNNNNTGG	2 cut(s)	1225, 1460
VneI	GTGCAC	1 cut(s)	726
VspI	ATTAAT	3 cut(s)	1458, 1470, 1769
XagI	CCTNNNNNAGG	2 cut(s)	227, 1976
XapI	RAATTY	2 cut(s)	90, 316
XbaI	TCTAGA	1 cut(s)	1345
XceI	RCATGY	1 cut(s)	1964
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	1212
XspI	CTAG	8 cut(s)	473, 962, 1239, 1326, 1346, 1637, 1688, 1740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.