AT1G66170

PHD finger protein MALE MEIOCYTE DEATH

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
24638685 .. 24641494
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G66170.1

Sequence Viewer

Length: 2115 bp
ATGCCAGTCCCAATCATCGAAACGTGTCGTAAGAGAAAACGGAAGCCAAAAGTTTACAATCTACAACGATTCGGGGAAGATGGGTTTCCGATACAACGGAACGGAGCTTTTCGCGATCAAATTAGGGTTTTTTTACGGGACTGTGCGGAGATTGAAGATTATGATATCCGCGGTATGACTGTGTGGTGTACTCTTTTAAGCCATGAGACGAAGAGTTCTCTGATTCCGTTGTACATTGTTGAAGAAAATGTGAAACATTCATCGGAACCCTATTGCGATCACTGTCGTTGCACAGGTTGGAGTAACCATTTTGTGTCGAAGAGAAAATATCACTTCATTATTCCGATTGATACTGAGTGGAGTTTGCCATTAGAAGATGATGCTTTTGATTCTCAATCCCATGTTTTACATGGTTTGATTCATTGCAATGGTTTTGGTCATTTGGTATGTGTCAATGGTATGGAAAGTGGTTCTAAGTACTTATGCGGAAGAGAGATTGTGGACTTTTGGGATCGGCTTTGTAATAGTCTCGGAGCAAGGATGATTACTGTTGAAGATTTGGCTAAGAAGAGGTCTGTGGAACTGAGGTTGTTGTATGGTGTTGCTTATGGTCACTCTTGGTTTGGAAGATGGGGATATAAGTTCTGTTGTGGGAGTTTTGGTGTGACCAAGAATGAGTATGAGAATGCCATTGAGGCTCTTGGTTCACTTGAGATTGATCAAATCGAGTTTGATTTCGGTGAGCTTCGACAATCTAAGGAGATCAATCAGGTTTTTCGATATTACAGAGAAATGAGTGAAGGACACTTGAAGACTTTCAGAGATCTTTTGCGTTTTATGCTCATTATAAAGTCTCATGCTTCTCCTCAAAAGCTTCTTCCTGTGACTCCTCCTCTCTTGACAGATTCTCCTCATCAGAAGAGATCAAGCCGATTGCTTTTGAAGAAAAGTGATGTTGCGGATAATGACAAGTCTCCGAAATATAGGAACTATAGTACTGTGGCTGCAAATTTGGGTAGTAGATGGCCTGTGAGGAGACTAATATTTGCAGCTGAAGTGATAGTAGAGTCACTGAAAGAGATGAAAGCGTTGAAGCAGAACGGTATGACTCGACAAGATGTTAGGGATTCAGCTAGATTGCATATTGGAGATACCGGTCTGCTTGATTACGTGCTGAAGTCAATGAACAATGTGGTTGTTGGGGATGTTTTGGTTCGACGTTATGTTGATCCCATTACACGGATCCTGCACTATACAATACAGGATCTTGATGATGCGGTGAAAGCCAAAGAACCGAAGAAAAAAGAAGCTGTTGTGCTAGAGGAGATTACTCCGTTGAGGATTCTTACTCCATTGAAACCTGGAGCTGACGTTTATGGAGATCTGTTGTTACTATACACAAATGTGCTGTTGAACTATCCAGAATCTGAGCTAGTGAGATCTGCAACTCAAGCAATCTTAGACTCTAAACACTTCATCAAAGAGTGGCCTATATGGGACAACAATGACACAGTCTTGCAATTTCTTTGCCGTATCAATCCAAGTTTGGTTGATGTGAGATCCGAACAGACCACAGAGCTGCCTCCAGGCGAATTAGTCACAGTGCCATTACAAGCTACAGTCTATGATCTAAAGCAAGCCATTGAAGAGACCTTCAGAGATACTTACTGCATCTTGTCAAATTTTGTAGTGACTGAGATTGATGAGGTTGAAGAAGATATGAGTTTGATCGGTTCTTGTTCTGCTTTAACAGTGAGAGGTCATGGGATAGATTTGGAATCAAAACTCAAGTGTCAAGGTGGATGTGATACATGGATGGTGAAATGTATTTGCAGAGCTAGAGATGATGATGGCGAGAGGATGATATCTTGTGATGTTTGTGAGGTATGGCAACATACACGATGTTGTGGGATTGATGATTCAGATACTTTGCCTCCACTTTTTGTTTGTTCGAATTGCTGTGAAGAATTTGCAGAGCAACAGAGGAAAGTGCTGCAGCCAAAGTATGAGTTTCCAAGTTCAGAGAATGTGTTTTTGCTTGAATCTGCAGATGATTTCTTTGGAGATCAGAGATGTCTTGGTATGATTTTTCCTGAAGAAAACTATCTTTTGTAA

Protein Analysis

704

Amino Acids

80.81

Weight (kDa)

5.58

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_plant_repro PF25874 341 - 422 4.7e-31 Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420 PF25565 502 - 588 2.2e-21 At1g33420-like, ubiquitin-like domain
PHD PF00628 609 - 653 5e-07 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 848
AccII CGCG 2 cut(s) 114, 171
AciI CCGC 6 cut(s) 146, 169, 171, 486, 959, 1277
AclWI GGATC 6 cut(s) 519, 1223, 1237, 1250, 1272, 1554
AcsI RAATTY 3 cut(s) 1009, 1681, 1967
AcuI CTGAAG 4 cut(s) 1074, 1196, 1639, 2115
AfaI GTAC 4 cut(s) 190, 233, 479, 997
AfiI CCNNNNNNNGG 1 cut(s) 1239
AflIII ACRYGT 1 cut(s) 23
AgeI ACCGGT 1 cut(s) 1154
AjnI CCWGG 2 cut(s) 1360, 1585
AleI CACNNNNGTG 1 cut(s) 1403
Alw26I GTCTC 6 cut(s) 200, 533, 858, 978, 1030, 1643
AlwI GGATC 6 cut(s) 519, 1223, 1237, 1250, 1272, 1554
AlwNI CAGNNNCTG 1 cut(s) 1427
AoxI GGCC 2 cut(s) 1025, 1487
ApeKI GCWGC 5 cut(s) 1004, 1049, 1579, 1993, 1996
ApoI RAATTY 3 cut(s) 1009, 1681, 1967
AsiGI ACCGGT 1 cut(s) 1154
Asp700I GAANNNNTTC 1 cut(s) 815
AsuHPI GGTGA 3 cut(s) 752, 1291, 1831
AsuII TTCGAA 1 cut(s) 1952
BamHI GGATCC 1 cut(s) 1242
BbsI GAAGAC 1 cut(s) 818
BbvI GCAGC 5 cut(s) 991, 1061, 1566, 1980, 2008
BccI CCATC 5 cut(s) 74, 624, 1017, 1810, 1844
BceAI ACGGC 1 cut(s) 1515
BciT130I CCWGG 2 cut(s) 1362, 1587
BclI TGATCA 1 cut(s) 718
BcoDI GTCTC 6 cut(s) 200, 533, 858, 978, 1030, 1643
BfaI CTAG 4 cut(s) 1134, 1319, 1433, 1839
BfmI CTRYAG 4 cut(s) 991, 1617, 1994, 2046
BglI GCCNNNNNGGC 1 cut(s) 695
BglII AGATCT 3 cut(s) 823, 1381, 1439
BisI GCNGC 5 cut(s) 1005, 1050, 1580, 1994, 1997
BlsI GCNGC 5 cut(s) 1006, 1051, 1581, 1995, 1998
BmcAI AGTACT 2 cut(s) 479, 997
Bme1390I CCNGG 2 cut(s) 1362, 1587
BmiI GGNNCC 2 cut(s) 267, 1244
BmrFI CCNGG 2 cut(s) 1362, 1587
BmsI GCATC 3 cut(s) 370, 1264, 1680
BpiI GAAGAC 1 cut(s) 818
BpmI CTGGAG 2 cut(s) 1383, 1569
Bpu14I TTCGAA 1 cut(s) 1952
BpuEI CTTGAG 3 cut(s) 731, 1434, 1772
BsaAI YACGTR 1 cut(s) 1171
BsaI GGTCTC 1 cut(s) 1643
BsaJI CCNNGG 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 1154
BsaXI ACNNNNNCTCC 8 cut(s) 646, 676, 892, 922, 1356, 1386, 1918, 1948
Bsc4I CCNNNNNNNGG 1 cut(s) 1239
Bse118I RCCGGY 1 cut(s) 1154
Bse1I ACTGG 1 cut(s) 5
Bse3DI GCAATG 2 cut(s) 421, 433
BseBI CCWGG 2 cut(s) 1362, 1587
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 5 cut(s) 546, 1210, 1808, 1821, 1866
BseLI CCNNNNNNNGG 1 cut(s) 1239
BseMI GCAATG 2 cut(s) 421, 433
BseMII CTCAG 4 cut(s) 345, 575, 1419, 1686
BseNI ACTGG 1 cut(s) 5
BseRI GAGGAG 6 cut(s) 855, 879, 882, 900, 1048, 1337
BseXI GCAGC 5 cut(s) 991, 1061, 1566, 1980, 2008
BsgI GTGCAG 1 cut(s) 1232
Bsh1236I CGCG 2 cut(s) 114, 171
BshFI GGCC 2 cut(s) 1027, 1489
BshTI ACCGGT 1 cut(s) 1154
BsiSI CCGG 1 cut(s) 1155
BslFI GGGAC 2 cut(s) 152, 1511
BslI CCNNNNNNNGG 1 cut(s) 1239
BsmAI GTCTC 6 cut(s) 200, 533, 858, 978, 1030, 1643
BsmBI CGTCTC 1 cut(s) 200
BsmFI GGGAC 2 cut(s) 152, 1511
BsmI GAATGC 1 cut(s) 691
BsnI GGCC 2 cut(s) 1027, 1489
Bso31I GGTCTC 1 cut(s) 1643
Bsp119I TTCGAA 1 cut(s) 1952
Bsp1407I TGTACA 1 cut(s) 231
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 6 cut(s) 146, 169, 171, 486, 959, 1277
BspANI GGCC 2 cut(s) 1027, 1489
BspCNI CTCAG 4 cut(s) 346, 576, 1420, 1687
BspFNI CGCG 2 cut(s) 114, 171
BspLI GGNNCC 2 cut(s) 267, 1244
BspMAI CTGCAG 2 cut(s) 1998, 2050
BspPI GGATC 6 cut(s) 519, 1223, 1237, 1250, 1272, 1554
BspT104I TTCGAA 1 cut(s) 1952
BspTNI GGTCTC 1 cut(s) 1643
BsrDI GCAATG 2 cut(s) 421, 433
BsrFI RCCGGY 1 cut(s) 1154
BsrGI TGTACA 1 cut(s) 231
BsrI ACTGG 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 1154
BssECI CCNNGG 1 cut(s) 169
Bst2UI CCWGG 2 cut(s) 1362, 1587
Bst6I CTCTTC 6 cut(s) 206, 314, 484, 563, 914, 1641
BstAUI TGTACA 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 1171
BstBI TTCGAA 1 cut(s) 1952
BstC8I GCNNGC 1 cut(s) 1638
BstDEI CTNAG 8 cut(s) 354, 474, 564, 584, 756, 1428, 1459, 1695
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 5 cut(s) 546, 1210, 1808, 1821, 1866
BstFNI CGCG 2 cut(s) 114, 171
BstMAI GTCTC 6 cut(s) 200, 533, 858, 978, 1030, 1643
BstMWI GCNNNNNNNGC 4 cut(s) 695, 838, 1283, 1451
BstNI CCWGG 2 cut(s) 1362, 1587
BstSCI CCNGG 2 cut(s) 1360, 1585
BstSFI CTRYAG 4 cut(s) 991, 1617, 1994, 2046
BstUI CGCG 2 cut(s) 114, 171
BstV1I GCAGC 5 cut(s) 991, 1061, 1566, 1980, 2008
BstV2I GAAGAC 1 cut(s) 818
BstX2I RGATCY 6 cut(s) 823, 1242, 1264, 1381, 1439, 1559
BstYI RGATCY 6 cut(s) 823, 1242, 1264, 1381, 1439, 1559
BsuRI GGCC 2 cut(s) 1027, 1489
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 5 cut(s) 546, 1210, 1808, 1821, 1866
BtsIMutI CAGTG 4 cut(s) 280, 1070, 1608, 1758
BtuMI TCGCGA 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 1638
CaiI CAGNNNCTG 1 cut(s) 1427
Cfr10I RCCGGY 1 cut(s) 1154
Cfr42I CCGCGG 1 cut(s) 172
Csp6I GTAC 4 cut(s) 189, 232, 478, 996
CspAI ACCGGT 1 cut(s) 1154
CviAII CATG 6 cut(s) 203, 401, 410, 857, 1763, 1812
CviQI GTAC 4 cut(s) 189, 232, 478, 996
DdeI CTNAG 8 cut(s) 354, 474, 564, 584, 756, 1428, 1459, 1695
Eam1104I CTCTTC 6 cut(s) 206, 314, 484, 563, 914, 1641
EarI CTCTTC 6 cut(s) 206, 314, 484, 563, 914, 1641
Eco31I GGTCTC 1 cut(s) 1643
Eco32I GATATC 2 cut(s) 166, 1866
Eco57I CTGAAG 4 cut(s) 1074, 1196, 1639, 2115
EcoRII CCWGG 2 cut(s) 1360, 1585
EcoRV GATATC 2 cut(s) 166, 1866
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 6 cut(s) 206, 404, 413, 860, 1766, 1815
FaqI GGGAC 2 cut(s) 152, 1511
FatI CATG 6 cut(s) 202, 400, 409, 856, 1762, 1811
FbaI TGATCA 1 cut(s) 718
Fnu4HI GCNGC 5 cut(s) 1005, 1050, 1580, 1994, 1997
FokI GGATG 5 cut(s) 553, 1217, 1815, 1828, 1873
Fsp4HI GCNGC 5 cut(s) 1005, 1050, 1580, 1994, 1997
FspBI CTAG 4 cut(s) 1134, 1319, 1433, 1839
GluI GCNGC 5 cut(s) 1005, 1050, 1580, 1994, 1997
GsuI CTGGAG 2 cut(s) 1383, 1569
HaeIII GGCC 2 cut(s) 1027, 1489
HapII CCGG 1 cut(s) 1155
Hin1II CATG 6 cut(s) 206, 404, 413, 860, 1766, 1815
HindIII AAGCTT 1 cut(s) 872
HpaII CCGG 1 cut(s) 1155
HphI GGTGA 3 cut(s) 752, 1291, 1831
Hpy166II GTNNAC 4 cut(s) 55, 189, 502, 707
Hpy188III TCNNGA 5 cut(s) 113, 898, 1268, 1421, 2093
Hpy8I GTNNAC 4 cut(s) 55, 189, 502, 707
Hpy99I CGWCG 1 cut(s) 1221
HpyAV CCTTC 2 cut(s) 794, 1663
HpyCH4IV ACGT 4 cut(s) 23, 1170, 1219, 1371
HpyF10VI GCNNNNNNNGC 4 cut(s) 695, 838, 1283, 1451
HpyF3I CTNAG 8 cut(s) 354, 474, 564, 584, 756, 1428, 1459, 1695
HpySE526I ACGT 4 cut(s) 23, 1170, 1219, 1371
Hsp92II CATG 6 cut(s) 206, 404, 413, 860, 1766, 1815
Ksp22I TGATCA 1 cut(s) 718
KspI CCGCGG 1 cut(s) 172
LmnI GCTCC 3 cut(s) 104, 533, 1364
Lsp1109I GCAGC 5 cut(s) 991, 1061, 1566, 1980, 2008
LweI GCATC 3 cut(s) 370, 1264, 1680
MaeI CTAG 4 cut(s) 1134, 1319, 1433, 1839
MaeII ACGT 4 cut(s) 23, 1170, 1219, 1371
MaeIII GTNAC 8 cut(s) 302, 611, 664, 883, 1068, 1389, 1597, 1690
MflI RGATCY 6 cut(s) 823, 1242, 1264, 1381, 1439, 1559
MluCI AATT 7 cut(s) 120, 1009, 1520, 1592, 1681, 1954, 1967
MlyI GAGTC 4 cut(s) 880, 1076, 1102, 1457
MmeI TCCRAC 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 815
MseI TTAA 2 cut(s) 197, 1748
MslI CAYNNNNRTG 2 cut(s) 426, 1403
MspA1I CMGCKG 2 cut(s) 171, 1052
MspI CCGG 1 cut(s) 1155
MspR9I CCNGG 2 cut(s) 1362, 1587
Mva1269I GAATGC 1 cut(s) 691
MvaI CCWGG 2 cut(s) 1362, 1587
MvnI CGCG 2 cut(s) 114, 171
MwoI GCNNNNNNNGC 4 cut(s) 695, 838, 1283, 1451
NlaIII CATG 6 cut(s) 206, 404, 413, 860, 1766, 1815
NlaIV GGNNCC 2 cut(s) 267, 1244
NmuCI GTSAC 6 cut(s) 611, 664, 883, 1068, 1597, 1690
NruI TCGCGA 1 cut(s) 114
NspV TTCGAA 1 cut(s) 1952
OliI CACNNNNGTG 1 cut(s) 1403
PctI GAATGC 1 cut(s) 691
PdmI GAANNNNTTC 1 cut(s) 815
PflFI GACNNNGTC 1 cut(s) 1511
PinAI ACCGGT 1 cut(s) 1154
PkrI GCNGC 5 cut(s) 1006, 1051, 1581, 1995, 1998
PleI GAGTC 4 cut(s) 880, 1075, 1102, 1457
PpsI GAGTC 4 cut(s) 880, 1075, 1102, 1457
Ppu21I YACGTR 1 cut(s) 1171
PsiI TTATAA 1 cut(s) 848
Psp6I CCWGG 2 cut(s) 1360, 1585
PspGI CCWGG 2 cut(s) 1360, 1585
PspN4I GGNNCC 2 cut(s) 267, 1244
PstI CTGCAG 2 cut(s) 1998, 2050
PstNI CAGNNNCTG 1 cut(s) 1427
PsuI RGATCY 6 cut(s) 823, 1242, 1264, 1381, 1439, 1559
PsyI GACNNNGTC 1 cut(s) 1511
PvuII CAGCTG 1 cut(s) 1052
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 4 cut(s) 190, 233, 479, 997
RsaNI GTAC 4 cut(s) 189, 232, 478, 996
RseI CAYNNNNRTG 2 cut(s) 426, 1403
SacII CCGCGG 1 cut(s) 172
SaqAI TTAA 2 cut(s) 197, 1748
SatI GCNGC 5 cut(s) 1005, 1050, 1580, 1994, 1997
ScaI AGTACT 2 cut(s) 479, 997
SchI GAGTC 4 cut(s) 880, 1076, 1102, 1457
ScrFI CCNGG 2 cut(s) 1362, 1587
SfaNI GCATC 3 cut(s) 370, 1264, 1680
SfcI CTRYAG 4 cut(s) 991, 1617, 1994, 2046
Sfr303I CCGCGG 1 cut(s) 172
SfuI TTCGAA 1 cut(s) 1952
SgrBI CCGCGG 1 cut(s) 172
SmiMI CAYNNNNRTG 2 cut(s) 426, 1403
SmlI CTYRAG 3 cut(s) 710, 1449, 1787
SmoI CTYRAG 3 cut(s) 710, 1449, 1787
Sse9I AATT 7 cut(s) 120, 1009, 1520, 1592, 1681, 1954, 1967
SsiI CCGC 6 cut(s) 146, 169, 171, 486, 959, 1277
SspI AATATT 1 cut(s) 1044
SspMI CTAG 4 cut(s) 1134, 1319, 1433, 1839
StyD4I CCNGG 2 cut(s) 1360, 1585
TaiI ACGT 4 cut(s) 26, 1173, 1222, 1374
TaqI TCGA 8 cut(s) 18, 317, 726, 748, 778, 1111, 1216, 1952
TasI AATT 7 cut(s) 120, 1009, 1520, 1592, 1681, 1954, 1967
TatI WGTACW 4 cut(s) 188, 231, 477, 995
Tru1I TTAA 2 cut(s) 197, 1748
Tru9I TTAA 2 cut(s) 197, 1748
TscAI CASTG 4 cut(s) 287, 1077, 1608, 1758
TseFI GTSAC 6 cut(s) 611, 664, 883, 1068, 1597, 1690
TseI GCWGC 5 cut(s) 1004, 1049, 1579, 1993, 1996
Tsp45I GTSAC 6 cut(s) 611, 664, 883, 1068, 1597, 1690
TspDTI ATGAA 6 cut(s) 249, 325, 410, 1097, 1199, 1465
TspGWI ACGGA 6 cut(s) 55, 112, 117, 216, 1255, 1323
TspRI CASTG 4 cut(s) 287, 1077, 1608, 1758
Tth111I GACNNNGTC 1 cut(s) 1511
XapI RAATTY 3 cut(s) 1009, 1681, 1967
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 815
XspI CTAG 4 cut(s) 1134, 1319, 1433, 1839
ZrmI AGTACT 2 cut(s) 479, 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.