Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Forward (+)

37811950 .. 37815035

Gene Structure 3086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG338500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2052 bp

ATGTCGATGATGATTCCAAGCCTTGAAGCCTGCAAGAAGAGGAAGCGAAGGCCAAAGGTTTATGGGTTCCATTCATTTGGGGAACCCGGCTACCCGATTCTTCCACTGGGTCCATTCCGTGATAACATTCGTCTCTTTCTTCAACAATGTGCAGAGCTGGAGAGTTACAGTGTTCAGGGCATGCCCGTTTGGTGCACTCTTCTTGTTCATGACAACCGAAGCCTTGTTCTTCCTCTCTACACCATTGAAGAGAACGTCAAGACCTCCGACACCCCCTTCTGCGATTACTGCCGATGCACTGGTTGGAGTAACCATTTTGTATCGAAGAGAAAGTACCACATGATAATTCCAATGGATGATGACTGGAATAAGCCTTTGGATGATGGTATCTTGGATGTTTCAACCCATCTCTTACATGGGTTAATTCACTGTAATGGGTTTGCTCATTTGCTATGCATCAATGGACTTGAAGGTGGTTCTAAGCATCTTTGTGGCAGAGAGCTCATGGATCTTTGGGATCGGATCTGCATTAATCTTCGAACCAGGAAAATCACAGTCGAAGATGTCTCAAAGAAACGGTCCATGGAACTACGCCTGCTCCATGGAGTTGCTTATGGGCATCCTTGGTTTGGTAGATGGGGTTACAAATTTTGCCATGGAAGCTTTGGCGTCAAAGAGCACATTTATGAAAGAGCACTTGAGATTCTCAGCTCATTAAAACTTGAAAAGATCATCCAAGATTTTAGTGACATGGACCAGTATGAAGAGCTGAAGAAAATTGTTCGTTACTACAGATATTTGAGTGAAACACAGTTAGTTACTATCAAAGATCTTCTCAGATTTATGCTTACTATCAAGGCTTGCTTTCCTGCACAGAGAAACTCGCTACTTCCTACTGCAAAACCTGCAGATGTGATTGAGAATGCAAAACCTGCAACCAGAGAATCCGTTAAGATCAAGCCTCTGATAAAGGAAAAGTCTTCAAAGTATAGGAAGTTTGCTACTGTTGTTTCTCACATGGATAGCAGATGGCCTGCCCGAAGACTAGAGTTTGCAGCAGATGTGATTGTGAATGCACTGAAAGAAAAGAAAGAGAAGGACTTTAGAAATGGTGGGATGGCCCGGCAAGATGTGCGAGATGCAGCTAGGTTGCATATTGGAGATACAGGTTTGTTGGATTATGTGCTGAAATCACTGAACAATGTGGTTGTTGGGAATCAGGTTGTCTGCCGTTCAGTGAATCCAACCACTCGGATTTTGGAATATACGGTTCATGATCTTAATGATGGGGATAAAGTGTCTGAACCTGAGAAAGAGATGCTTCCCCTACCCCCTCCACCAGCTGCTCCAGTTCCTGGAATTGATGTTTACAGTGATGTTCTTTATTTGTATGAGCATGTACTGTTGGGATATCCAGAATCTGGATTGCTAGAGTTGGCTACACAAGCAGTATTGGACACTAAGCACTTTGTAAAGGAATGTTCATTTAGGGATGAGAAAGAGCAGTTACTGACATTGTTTTGCCAAATCTTGCCAAGTTTGACTGATAAGGAAATTGAATTCAAGAGGGAGTTGCCTCCAGGTGAGATAGTGGTAGTGCCACTGGATGCAACTGTTGGAGAGCTAAAGCAGGAAGCTGAGAGTGCAATGAGGGATACATATTGTATCACAGAACAGTTTGTGGTGATGGAAATCAGAGGCTTGGAGGAATCAGATGATATGGAAGTGCTTTCTGGAGCAGTTCAATCGGGTACAGAGGTTGGAGTGAGAGGGAGTGGGATAGATTTAGACACACCGTTGAGGTACCAAGGGGGATCGGACACATGGATGGTGAGATGTGAATGTGGGGCTACAGATGATGATGGTGAAAGGATGGTGGCCTGTGATATATGCGAAGTGTGGCAGCATACACGCTGCTGTGGAATGGAGGATGCTGATGAAGTCCCACGTCTGTTCATTTGCTCAACATGTTACGTTTCACTTGTTCCGCCTAAAACTGAACCTGCAGCTAAATTTGACTGTTCCACTGCGTTTCTGGAGTGGAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

683

Amino Acids

77.77

Weight (kDa)

5.77

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	343 - 426	1.2e-34	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	501 - 593	4.3e-30	At1g33420-like, ubiquitin-like domain
PHD	PF00628	613 - 657	5.8e-06	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	913, 940, 2011
Acc65I	GGTACC	1 cut(s)	1803
AccB1I	GGYRCC	1 cut(s)	1803
AccB7I	CCANNNNNTGG	2 cut(s)	1355, 1421
AciI	CCGC	1 cut(s)	1988
AclWI	GGATC	4 cut(s)	516, 525, 530, 1822
AcsI	RAATTY	3 cut(s)	647, 1559, 2012
AcuI	CTGAAG	1 cut(s)	791
AcyI	GRCGYC	1 cut(s)	669
AfaI	GTAC	4 cut(s)	335, 1401, 1753, 1805
AfiI	CCNNNNNNNGG	3 cut(s)	629, 1355, 1421
AflIII	ACRYGT	1 cut(s)	1967
AjiI	CACGTC	1 cut(s)	1949
AjnI	CCWGG	3 cut(s)	542, 1354, 1579
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
Alw21I	GWGCWC	4 cut(s)	197, 504, 681, 697
Alw26I	GTCTC	3 cut(s)	137, 571, 2038
Alw44I	GTGCAC	1 cut(s)	193
AlwI	GGATC	4 cut(s)	516, 525, 530, 1822
AlwNI	CAGNNNCTG	3 cut(s)	1355, 1421, 1510
AoxI	GGCC	4 cut(s)	50, 1031, 1119, 1878
ApaLI	GTGCAC	1 cut(s)	193
ApeKI	GCWGC	6 cut(s)	1055, 1142, 1343, 1903, 1914, 2006
ApoI	RAATTY	3 cut(s)	647, 1559, 2012
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
AseI	ATTAAT	1 cut(s)	531
Asp718I	GGTACC	1 cut(s)	1803
AspS9I	GGNCC	4 cut(s)	110, 579, 754, 1120
AsuC2I	CCSGG	2 cut(s)	87, 1123
AsuHPI	GGTGA	4 cut(s)	1595, 1696, 1843, 1877
AsuII	TTCGAA	1 cut(s)	538
AvaII	GGWCC	3 cut(s)	110, 579, 754
BaeGI	GKGCMC	1 cut(s)	197
BaeI	ACNNNNGTAYC	2 cut(s)	1743, 1776
BanI	GGYRCC	1 cut(s)	1803
BanII	GRGCYC	1 cut(s)	504
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BbsI	GAAGAC	2 cut(s)	972, 1048
Bbv12I	GWGCWC	4 cut(s)	197, 504, 681, 697
BbvI	GCAGC	6 cut(s)	1067, 1154, 1330, 1901, 1915, 2018
BceAI	ACGGC	1 cut(s)	1215
BcgI	CGANNNNNNTGC	2 cut(s)	1728, 1762
BciT130I	CCWGG	3 cut(s)	544, 1356, 1581
BciVI	GTATCC	1 cut(s)	1648
BcnI	CCSGG	2 cut(s)	87, 1123
BcoDI	GTCTC	3 cut(s)	137, 571, 2038
BfaI	CTAG	3 cut(s)	1046, 1146, 1430
BfmI	CTRYAG	4 cut(s)	790, 906, 1851, 2004
BfuAI	ACCTGC	3 cut(s)	913, 940, 2011
BfuI	GTATCC	1 cut(s)	1648
BglII	AGATCT	1 cut(s)	829
BisI	GCNGC	6 cut(s)	1056, 1143, 1344, 1904, 1915, 2007
BlsI	GCNGC	6 cut(s)	1057, 1144, 1345, 1905, 1916, 2008
Bme1390I	CCNGG	5 cut(s)	87, 544, 1123, 1356, 1581
Bme18I	GGWCC	3 cut(s)	110, 579, 754
BmgBI	CACGTC	1 cut(s)	1949
BmgT120I	GGNCC	4 cut(s)	110, 579, 754, 1120
BmiI	GGNNCC	4 cut(s)	68, 84, 111, 1805
BmrFI	CCNGG	5 cut(s)	87, 544, 1123, 1356, 1581
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	8 cut(s)	284, 465, 493, 628, 1129, 1308, 1597, 1921
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	2 cut(s)	972, 1048
BpmI	CTGGAG	4 cut(s)	179, 1332, 1563, 1755
Bpu14I	TTCGAA	1 cut(s)	538
BpuEI	CTTGAG	1 cut(s)	719
BpuMI	CCSGG	2 cut(s)	87, 1123
BsaBI	GATNNNNATC	1 cut(s)	1691
BsaHI	GRCGYC	1 cut(s)	669
BsaJI	CCNNGG	5 cut(s)	582, 601, 623, 655, 1807
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	3 cut(s)	629, 1355, 1421
Bse1I	ACTGG	6 cut(s)	111, 304, 368, 757, 1349, 1608
Bse3DI	GCAATG	1 cut(s)	1653
Bse8I	GATNNNNATC	1 cut(s)	1691
BseBI	CCWGG	3 cut(s)	544, 1356, 1581
BseDI	CCNNGG	5 cut(s)	582, 601, 623, 655, 1807
BseJI	GATNNNNATC	1 cut(s)	1691
BseLI	CCNNNNNNNGG	3 cut(s)	629, 1355, 1421
BseMI	GCAATG	1 cut(s)	1653
BseMII	CTCAG	4 cut(s)	721, 850, 1299, 1629
BseNI	ACTGG	6 cut(s)	111, 304, 368, 757, 1349, 1608
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	6 cut(s)	1067, 1154, 1330, 1901, 1915, 2018
BsgI	GTGCAG	2 cut(s)	171, 855
BshFI	GGCC	4 cut(s)	52, 1033, 1121, 1880
BshNI	GGYRCC	1 cut(s)	1803
BsiHKAI	GWGCWC	4 cut(s)	197, 504, 681, 697
BsiSI	CCGG	2 cut(s)	87, 1123
BslFI	GGGAC	1 cut(s)	1928
BslI	CCNNNNNNNGG	3 cut(s)	629, 1355, 1421
BsmAI	GTCTC	3 cut(s)	137, 571, 2038
BsmBI	CGTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	1928
BsmI	GAATGC	2 cut(s)	928, 1078
BsnI	GGCC	4 cut(s)	52, 1033, 1121, 1880
Bsp119I	TTCGAA	1 cut(s)	538
Bsp1286I	GDGCHC	4 cut(s)	197, 504, 681, 697
Bsp143I	GATC	8 cut(s)	508, 517, 522, 729, 829, 954, 1276, 1814
Bsp19I	CCATGG	3 cut(s)	582, 601, 655
BspACI	CCGC	1 cut(s)	1988
BspANI	GGCC	4 cut(s)	52, 1033, 1121, 1880
BspCNI	CTCAG	4 cut(s)	720, 849, 1300, 1630
BspHI	TCATGA	2 cut(s)	208, 1273
BspLI	GGNNCC	4 cut(s)	68, 84, 111, 1805
BspMAI	CTGCAG	2 cut(s)	910, 2008
BspMI	ACCTGC	3 cut(s)	913, 940, 2011
BspPI	GGATC	4 cut(s)	516, 525, 530, 1822
BspQI	GCTCTTC	1 cut(s)	759
BspT104I	TTCGAA	1 cut(s)	538
BspT107I	GGYRCC	1 cut(s)	1803
BsrDI	GCAATG	1 cut(s)	1653
BsrI	ACTGG	6 cut(s)	111, 304, 368, 757, 1349, 1608
BssECI	CCNNGG	5 cut(s)	582, 601, 623, 655, 1807
BssMI	GATC	8 cut(s)	508, 517, 522, 729, 829, 954, 1276, 1814
BssNI	GRCGYC	1 cut(s)	669
BssT1I	CCWWGG	5 cut(s)	582, 601, 623, 655, 1807
Bst2UI	CCWGG	3 cut(s)	544, 1356, 1581
Bst6I	CTCTTC	5 cut(s)	32, 204, 243, 320, 759
BstACI	GRCGYC	1 cut(s)	669
BstAPI	GCANNNNNTGC	3 cut(s)	905, 932, 1132
BstBI	TTCGAA	1 cut(s)	538
BstC8I	GCNNGC	5 cut(s)	31, 182, 596, 862, 1035
BstDEI	CTNAG	6 cut(s)	480, 707, 836, 1308, 1461, 1638
BstDSI	CCRYGG	3 cut(s)	582, 601, 655
BstKTI	GATC	8 cut(s)	511, 520, 525, 732, 832, 957, 1279, 1817
BstMAI	GTCTC	3 cut(s)	137, 571, 2038
BstMBI	GATC	8 cut(s)	508, 517, 522, 729, 829, 954, 1276, 1814
BstMWI	GCNNNNNNNGC	7 cut(s)	288, 660, 905, 932, 1132, 1445, 1643
BstNI	CCWGG	3 cut(s)	544, 1356, 1581
BstNSI	RCATGY	3 cut(s)	184, 1400, 1971
BstSCI	CCNGG	5 cut(s)	85, 542, 1121, 1354, 1579
BstSFI	CTRYAG	4 cut(s)	790, 906, 1851, 2004
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	6 cut(s)	1067, 1154, 1330, 1901, 1915, 2018
BstV2I	GAAGAC	2 cut(s)	972, 1048
BstX2I	RGATCY	3 cut(s)	508, 522, 829
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	3 cut(s)	508, 522, 829
BsuI	GTATCC	1 cut(s)	1648
BsuRI	GGCC	4 cut(s)	52, 1033, 1121, 1880
BtgI	CCRYGG	3 cut(s)	582, 601, 655
BtrI	CACGTC	1 cut(s)	1949
BtsI	GCAGTG	1 cut(s)	2025
BveI	ACCTGC	3 cut(s)	913, 940, 2011
Cac8I	GCNNGC	5 cut(s)	31, 182, 596, 862, 1035
CaiI	CAGNNNCTG	3 cut(s)	1355, 1421, 1510
CciI	TCATGA	2 cut(s)	208, 1273
Cfr13I	GGNCC	4 cut(s)	110, 579, 754, 1120
CseI	GACGC	1 cut(s)	658
Csp6I	GTAC	4 cut(s)	334, 1400, 1752, 1804
CviQI	GTAC	4 cut(s)	334, 1400, 1752, 1804
DdeI	CTNAG	6 cut(s)	480, 707, 836, 1308, 1461, 1638
DpnI	GATC	8 cut(s)	510, 519, 524, 731, 831, 956, 1278, 1816
DpnII	GATC	8 cut(s)	508, 517, 522, 729, 829, 954, 1276, 1814
Eam1104I	CTCTTC	5 cut(s)	32, 204, 243, 320, 759
EarI	CTCTTC	5 cut(s)	32, 204, 243, 320, 759
EciI	GGCGGA	1 cut(s)	1977
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	5 cut(s)	582, 601, 623, 655, 1807
Eco24I	GRGCYC	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	1412
Eco47I	GGWCC	3 cut(s)	110, 579, 754
Eco53kI	GAGCTC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	791
EcoICRI	GAGCTC	1 cut(s)	502
EcoRI	GAATTC	1 cut(s)	1559
EcoRII	CCWGG	3 cut(s)	542, 1354, 1579
EcoRV	GATATC	1 cut(s)	1412
EcoT14I	CCWWGG	5 cut(s)	582, 601, 623, 655, 1807
EcoT22I	ATGCAT	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	5 cut(s)	582, 601, 623, 655, 1807
Esp3I	CGTCTC	1 cut(s)	137
FalI	AAGNNNNNCTT	4 cut(s)	848, 880, 1305, 1337
FaqI	GGGAC	1 cut(s)	1928
Fnu4HI	GCNGC	6 cut(s)	1056, 1143, 1344, 1904, 1915, 2007
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	6 cut(s)	1056, 1143, 1344, 1904, 1915, 2007
FspBI	CTAG	3 cut(s)	1046, 1146, 1430
GluI	GCNGC	6 cut(s)	1056, 1143, 1344, 1904, 1915, 2007
GsuI	CTGGAG	4 cut(s)	179, 1332, 1563, 1755
HaeIII	GGCC	4 cut(s)	52, 1033, 1121, 1880
HapII	CCGG	2 cut(s)	87, 1123
HgaI	GACGC	1 cut(s)	658
Hin1I	GRCGYC	1 cut(s)	669
HindIII	AAGCTT	1 cut(s)	661
HinfI	GANTC	8 cut(s)	13, 97, 703, 944, 1216, 1240, 1418, 1709
HpaII	CCGG	2 cut(s)	87, 1123
HphI	GGTGA	4 cut(s)	1595, 1696, 1843, 1877
Hpy166II	GTNNAC	2 cut(s)	195, 1369
Hpy188I	TCNGA	9 cut(s)	268, 522, 839, 966, 1254, 1303, 1697, 1714, 1819
Hpy188III	TCNNGA	8 cut(s)	209, 259, 1274, 1415, 1422, 1564, 1734, 2036
Hpy8I	GTNNAC	2 cut(s)	195, 1369
HpyAV	CCTTC	4 cut(s)	42, 286, 464, 1090
HpyCH4IV	ACGT	3 cut(s)	255, 1948, 1974
HpyF10VI	GCNNNNNNNGC	7 cut(s)	288, 660, 905, 932, 1132, 1445, 1643
HpyF3I	CTNAG	6 cut(s)	480, 707, 836, 1308, 1461, 1638
HpySE526I	ACGT	3 cut(s)	255, 1948, 1974
Hsp92I	GRCGYC	1 cut(s)	669
KpnI	GGTACC	1 cut(s)	1807
Kzo9I	GATC	8 cut(s)	508, 517, 522, 729, 829, 954, 1276, 1814
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	3 cut(s)	603, 1351, 1736
Lsp1109I	GCAGC	6 cut(s)	1067, 1154, 1330, 1901, 1915, 2018
LweI	GCATC	8 cut(s)	284, 465, 493, 628, 1129, 1308, 1597, 1921
MaeI	CTAG	3 cut(s)	1046, 1146, 1430
MaeII	ACGT	3 cut(s)	255, 1948, 1974
MaeIII	GTNAC	8 cut(s)	164, 308, 641, 746, 785, 817, 1506, 1970
MalI	GATC	8 cut(s)	510, 519, 524, 731, 831, 956, 1278, 1816
MboI	GATC	8 cut(s)	508, 517, 522, 729, 829, 954, 1276, 1814
MflI	RGATCY	3 cut(s)	508, 522, 829
MhlI	GDGCHC	4 cut(s)	197, 504, 681, 697
MluCI	AATT	8 cut(s)	345, 423, 647, 777, 1359, 1554, 1559, 2012
MmeI	TCCRAC	6 cut(s)	284, 291, 1155, 1268, 1597, 1741
Mph1103I	ATGCAT	1 cut(s)	458
MseI	TTAA	5 cut(s)	422, 531, 716, 951, 1281
MslI	CAYNNNNRTG	4 cut(s)	432, 489, 684, 1826
MspA1I	CMGCKG	1 cut(s)	1343
MspI	CCGG	2 cut(s)	87, 1123
MspR9I	CCNGG	5 cut(s)	87, 544, 1123, 1356, 1581
Mva1269I	GAATGC	2 cut(s)	928, 1078
MvaI	CCWGG	3 cut(s)	544, 1356, 1581
MwoI	GCNNNNNNNGC	7 cut(s)	288, 660, 905, 932, 1132, 1445, 1643
NciI	CCSGG	2 cut(s)	87, 1123
NcoI	CCATGG	3 cut(s)	582, 601, 655
NdeII	GATC	8 cut(s)	508, 517, 522, 729, 829, 954, 1276, 1814
NlaIV	GGNNCC	4 cut(s)	68, 84, 111, 1805
NmuCI	GTSAC	1 cut(s)	746
NsiI	ATGCAT	1 cut(s)	458
NspI	RCATGY	3 cut(s)	184, 1400, 1971
NspV	TTCGAA	1 cut(s)	538
PaeI	GCATGC	1 cut(s)	184
PagI	TCATGA	2 cut(s)	208, 1273
PciI	ACATGT	1 cut(s)	1967
PciSI	GCTCTTC	1 cut(s)	759
PctI	GAATGC	2 cut(s)	928, 1078
PfeI	GAWTC	8 cut(s)	13, 97, 703, 944, 1216, 1240, 1418, 1709
PflMI	CCANNNNNTGG	2 cut(s)	1355, 1421
PfoI	TCCNGGA	1 cut(s)	1354
PkrI	GCNGC	6 cut(s)	1057, 1144, 1345, 1905, 1916, 2008
PscI	ACATGT	1 cut(s)	1967
PshBI	ATTAAT	1 cut(s)	531
Psp124BI	GAGCTC	1 cut(s)	504
Psp6I	CCWGG	3 cut(s)	542, 1354, 1579
PspGI	CCWGG	3 cut(s)	542, 1354, 1579
PspN4I	GGNNCC	4 cut(s)	68, 84, 111, 1805
PspPI	GGNCC	4 cut(s)	110, 579, 754, 1120
PstI	CTGCAG	2 cut(s)	910, 2008
PstNI	CAGNNNCTG	3 cut(s)	1355, 1421, 1510
PsuI	RGATCY	3 cut(s)	508, 522, 829
PvuII	CAGCTG	1 cut(s)	1343
RsaI	GTAC	4 cut(s)	335, 1401, 1753, 1805
RsaNI	GTAC	4 cut(s)	334, 1400, 1752, 1804
RseI	CAYNNNNRTG	4 cut(s)	432, 489, 684, 1826
SacI	GAGCTC	1 cut(s)	504
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	5 cut(s)	422, 531, 716, 951, 1281
SatI	GCNGC	6 cut(s)	1056, 1143, 1344, 1904, 1915, 2007
Sau3AI	GATC	8 cut(s)	508, 517, 522, 729, 829, 954, 1276, 1814
Sau96I	GGNCC	4 cut(s)	110, 579, 754, 1120
ScrFI	CCNGG	5 cut(s)	87, 544, 1123, 1356, 1581
SduI	GDGCHC	4 cut(s)	197, 504, 681, 697
SfaNI	GCATC	8 cut(s)	284, 465, 493, 628, 1129, 1308, 1597, 1921
SfcI	CTRYAG	4 cut(s)	790, 906, 1851, 2004
SfuI	TTCGAA	1 cut(s)	538
SinI	GGWCC	3 cut(s)	110, 579, 754
SmiMI	CAYNNNNRTG	4 cut(s)	432, 489, 684, 1826
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	8 cut(s)	345, 423, 647, 777, 1359, 1554, 1559, 2012
SsiI	CCGC	1 cut(s)	1988
SspMI	CTAG	3 cut(s)	1046, 1146, 1430
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	5 cut(s)	85, 542, 1121, 1354, 1579
StyI	CCWWGG	5 cut(s)	582, 601, 623, 655, 1807
TaiI	ACGT	3 cut(s)	258, 1951, 1977
TaqI	TCGA	4 cut(s)	5, 323, 538, 558
TasI	AATT	8 cut(s)	345, 423, 647, 777, 1359, 1554, 1559, 2012
TatI	WGTACW	1 cut(s)	1399
TfiI	GAWTC	8 cut(s)	13, 97, 703, 944, 1216, 1240, 1418, 1709
Tru1I	TTAA	5 cut(s)	422, 531, 716, 951, 1281
Tru9I	TTAA	5 cut(s)	422, 531, 716, 951, 1281
TseFI	GTSAC	1 cut(s)	746
TseI	GCWGC	6 cut(s)	1055, 1142, 1343, 1903, 1914, 2006
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	8 cut(s)	63, 197, 702, 777, 1262, 1473, 1945, 1953
TspGWI	ACGGA	2 cut(s)	107, 937
Van91I	CCANNNNNTGG	2 cut(s)	1355, 1421
VneI	GTGCAC	1 cut(s)	193
VpaK11BI	GGWCC	3 cut(s)	110, 579, 754
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	3 cut(s)	647, 1559, 2012
XceI	RCATGY	3 cut(s)	184, 1400, 1971
XcmI	CCANNNNNNNNNTGG	4 cut(s)	413, 662, 1255, 2032
XspI	CTAG	3 cut(s)	1046, 1146, 1430
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.