Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Reverse (-)

32070677 .. 32071465

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1260200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAATAATGTGATAGTTGGGAATCATATTGTGTGCCGTGCAGTGAACCCAGCAACTCGGGTTTTGGAGTATACAATTCATGATCTTGCAGATGGGGTTAAGGTCTCGGAGCCCGCTCAGTCGTTTCAATCAGCAACTCTAGTTCCTGGAGTTGATGTGTACAATGATGTGCTTTATCTATATGAGCACGTGCTGTTGGAATACCCGGAATCAGAGCAAATGGTTTTGGCTACTCAAAGACTATTGGGCGCCAAGCACTTTGTGAAGGAATGTTCACACAGGGATGATGAAGAGCAGTCGTTGACAATCTTTTGCCAACTCTTGACTGATATGGAATTCGTATTCAAAAGGGAGCTGCCGCCTGGTGAAGTAGTAGTTTTGCCACTGCATGCAACAGTCAGGGAACTAAAGCGAGCAGCTGAGAGTGCACTGAGAGATACTTACTTTATCACAGAACGGTTTGAGGTCATGGCAATCGAAGGCTTGGGTGAAATGGAAGATATGGAACCCCTTTTTGGAGTAGCTGAATCGGGAGTAGTAGTTGGTGTGAGAGGAAGCGGGATAGATTTAGACACGCCACTGAGGTATGAAGGCGGATCTGACATTTGGATTGTGAGTTGTGACTGCGGTGCTACAGATGATGACGGGGAGAGGATGGTGGCATGCGACTTATGTGAGGTGTGGCAACACACACGCTGCCGCGGAATTGAGGATGCTGACACTGTTCCACCTGTGTTTTTCTGCTCTGCATGTTGTGCTCTACTGGCGTCTCCTACATATTTCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

263

Amino Acids

29.1

Weight (kDa)

4.44

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	1 - 28	1.1e-06	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	98 - 187	1.8e-26	At1g33420-like, ubiquitin-like domain
PHD	PF00628	207 - 251	3e-07	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccBSI	CCGCTC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	71
AccII	CGCG	1 cut(s)	702
AciI	CCGC	7 cut(s)	114, 359, 558, 594, 627, 700, 702
AclWI	GGATC	1 cut(s)	604
AcsI	RAATTY	1 cut(s)	335
AcvI	CACGTG	1 cut(s)	190
AcyI	GRCGYC	2 cut(s)	249, 767
AdeI	CACNNNGTG	1 cut(s)	262
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	515
AgsI	TTSAA	2 cut(s)	128, 346
AjnI	CCWGG	2 cut(s)	145, 361
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	3 cut(s)	355, 419, 524
AluI	AGCT	3 cut(s)	355, 419, 524
Alw21I	GWGCWC	3 cut(s)	189, 430, 760
Alw26I	GTCTC	2 cut(s)	109, 774
Alw44I	GTGCAC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	604
Ama87I	CYCGRG	1 cut(s)	57
ApaLI	GTGCAC	1 cut(s)	426
ApeKI	GCWGC	3 cut(s)	355, 416, 696
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	377, 500
AvaI	CYCGRG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	114
BbrPI	CACGTG	1 cut(s)	190
Bbv12I	GWGCWC	3 cut(s)	189, 430, 760
BbvI	GCAGC	3 cut(s)	342, 428, 683
BccI	CCATC	2 cut(s)	86, 649
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	2 cut(s)	147, 363
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	109, 774
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	633
BfoI	RGCGCY	1 cut(s)	252
BisI	GCNGC	5 cut(s)	356, 359, 417, 697, 700
BlsI	GCNGC	5 cut(s)	357, 360, 418, 698, 701
Bme1390I	CCNGG	3 cut(s)	147, 206, 363
BmeT110I	CYCGRG	1 cut(s)	57
BmiI	GGNNCC	3 cut(s)	111, 250, 507
BmrFI	CCNGG	3 cut(s)	147, 206, 363
BmsI	GCATC	1 cut(s)	703
BpmI	CTGGAG	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	190
BsaHI	GRCGYC	2 cut(s)	249, 767
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	700
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 525, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse1I	ACTGG	1 cut(s)	768
BseBI	CCWGG	2 cut(s)	147, 363
BseDI	CCNNGG	1 cut(s)	700
BseGI	GGATG	3 cut(s)	289, 660, 718
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMII	CTCAG	4 cut(s)	131, 411, 422, 572
BseNI	ACTGG	1 cut(s)	768
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	3 cut(s)	342, 428, 683
BseYI	CCCAGC	1 cut(s)	49
BsgI	GTGCAG	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	702
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	3 cut(s)	189, 430, 760
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	2 cut(s)	109, 774
BsmBI	CGTCTC	1 cut(s)	774
Bso31I	GGTCTC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	57
Bsp1286I	GDGCHC	4 cut(s)	114, 189, 430, 760
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	82, 596
BspACI	CCGC	7 cut(s)	114, 359, 558, 594, 627, 700, 702
BspCNI	CTCAG	4 cut(s)	130, 412, 423, 573
BspFNI	CGCG	1 cut(s)	702
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	3 cut(s)	111, 250, 507
BspPI	GGATC	1 cut(s)	604
BspQI	GCTCTTC	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	109
BsrBI	CCGCTC	1 cut(s)	116
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	768
BssECI	CCNNGG	1 cut(s)	700
BssMI	GATC	2 cut(s)	82, 596
BssNAI	GTATAC	1 cut(s)	72
BssNI	GRCGYC	2 cut(s)	249, 767
Bst1107I	GTATAC	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	147, 363
Bst4CI	ACNGT	3 cut(s)	397, 459, 724
Bst6I	CTCTTC	1 cut(s)	285
BstACI	GRCGYC	2 cut(s)	249, 767
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstAUI	TGTACA	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	4 cut(s)	114, 390, 414, 664
BstDEI	CTNAG	4 cut(s)	117, 420, 431, 581
BstDSI	CCRYGG	1 cut(s)	700
BstF5I	GGATG	3 cut(s)	289, 660, 718
BstFNI	CGCG	1 cut(s)	702
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	2 cut(s)	85, 599
BstMAI	GTCTC	2 cut(s)	109, 774
BstMBI	GATC	2 cut(s)	82, 596
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 755, 764
BstNI	CCWGG	2 cut(s)	147, 363
BstNSI	RCATGY	3 cut(s)	392, 666, 753
BstSCI	CCNGG	3 cut(s)	145, 204, 361
BstSFI	CTRYAG	1 cut(s)	633
BstSLI	GKGCMC	1 cut(s)	430
BstUI	CGCG	1 cut(s)	702
BstV1I	GCAGC	3 cut(s)	342, 428, 683
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BstZ17I	GTATAC	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	700
BtsCI	GGATG	3 cut(s)	289, 660, 718
BtsI	GCAGTG	2 cut(s)	48, 383
BtsIMutI	CAGTG	5 cut(s)	48, 383, 428, 578, 720
Cac8I	GCNNGC	4 cut(s)	114, 390, 414, 664
CciI	TCATGA	1 cut(s)	79
CfoI	GCGC	1 cut(s)	251
Cfr42I	CCGCGG	1 cut(s)	703
CseI	GACGC	1 cut(s)	756
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	5 cut(s)	80, 389, 469, 663, 750
CviJI	RGCY	6 cut(s)	112, 230, 355, 419, 483, 524
CviKI_1	RGCY	6 cut(s)	112, 230, 355, 419, 483, 524
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	4 cut(s)	117, 420, 431, 581
DinI	GGCGCC	1 cut(s)	250
DpnI	GATC	2 cut(s)	84, 598
DpnII	GATC	2 cut(s)	82, 596
DraIII	CACNNNGTG	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	109
Eco72I	CACGTG	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	145, 361
EcoT38I	GRGCYC	1 cut(s)	114
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	774
FaeI	CATG	5 cut(s)	83, 392, 472, 666, 753
FatI	CATG	5 cut(s)	79, 388, 468, 662, 749
FauI	CCCGC	2 cut(s)	121, 551
FblI	GTMKAC	1 cut(s)	71
Fnu4HI	GCNGC	5 cut(s)	356, 359, 417, 697, 700
FokI	GGATG	3 cut(s)	296, 667, 725
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	5 cut(s)	356, 359, 417, 697, 700
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	5 cut(s)	356, 359, 417, 697, 700
GsaI	CCCAGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	252
HapII	CCGG	1 cut(s)	206
HgaI	GACGC	1 cut(s)	756
HhaI	GCGC	1 cut(s)	251
Hin1I	GRCGYC	2 cut(s)	249, 767
Hin1II	CATG	5 cut(s)	83, 392, 472, 666, 753
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	3 cut(s)	22, 209, 527
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	2 cut(s)	377, 500
Hpy166II	GTNNAC	6 cut(s)	46, 72, 160, 275, 303, 428
Hpy188I	TCNGA	3 cut(s)	109, 214, 601
Hpy188III	TCNNGA	3 cut(s)	80, 322, 531
Hpy8I	GTNNAC	6 cut(s)	46, 72, 160, 275, 303, 428
HpyAV	CCTTC	3 cut(s)	259, 473, 584
HpyCH4III	ACNGT	3 cut(s)	397, 459, 724
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	6 cut(s)	41, 89, 388, 392, 428, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 755, 764
HpyF3I	CTNAG	4 cut(s)	117, 420, 431, 581
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	2 cut(s)	249, 767
Hsp92II	CATG	5 cut(s)	83, 392, 472, 666, 753
HspAI	GCGC	1 cut(s)	249
KasI	GGCGCC	1 cut(s)	248
KspI	CCGCGG	1 cut(s)	703
Kzo9I	GATC	2 cut(s)	82, 596
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	2 cut(s)	109, 352
Lsp1109I	GCAGC	3 cut(s)	342, 428, 683
LweI	GCATC	1 cut(s)	703
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	2 cut(s)	84, 598
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	2 cut(s)	82, 596
MboII	GAAGA	2 cut(s)	302, 509
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	4 cut(s)	114, 189, 430, 760
MluCI	AATT	3 cut(s)	75, 335, 705
Mly113I	GGCGCC	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	6 cut(s)	457, 545, 576, 645, 670, 703
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	419, 702
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	3 cut(s)	147, 206, 363
MvaI	CCWGG	2 cut(s)	147, 363
MvnI	CGCG	1 cut(s)	702
MwoI	GCNNNNNNNGC	3 cut(s)	425, 755, 764
NarI	GGCGCC	1 cut(s)	249
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	2 cut(s)	82, 596
NlaIII	CATG	5 cut(s)	83, 392, 472, 666, 753
NlaIV	GGNNCC	3 cut(s)	111, 250, 507
NmuCI	GTSAC	1 cut(s)	620
NspI	RCATGY	3 cut(s)	392, 666, 753
PaeI	GCATGC	2 cut(s)	392, 666
PagI	TCATGA	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	22, 209, 527
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	5 cut(s)	357, 360, 418, 698, 701
PluTI	GGCGCC	1 cut(s)	252
PmaCI	CACGTG	1 cut(s)	190
PmlI	CACGTG	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	145, 361
PspCI	CACGTG	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	2 cut(s)	145, 361
PspN4I	GGNNCC	3 cut(s)	111, 250, 507
PsuI	RGATCY	1 cut(s)	596
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	282
SacII	CCGCGG	1 cut(s)	703
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	5 cut(s)	356, 359, 417, 697, 700
Sau3AI	GATC	2 cut(s)	82, 596
ScrFI	CCNGG	3 cut(s)	147, 206, 363
SduI	GDGCHC	4 cut(s)	114, 189, 430, 760
SetI	ASST	9 cut(s)	105, 192, 357, 421, 468, 526, 587, 681, 733
SfaNI	GCATC	1 cut(s)	703
SfcI	CTRYAG	1 cut(s)	633
SfoI	GGCGCC	1 cut(s)	250
Sfr303I	CCGCGG	1 cut(s)	703
SgrBI	CCGCGG	1 cut(s)	703
SmiMI	CAYNNNNRTG	1 cut(s)	282
SphI	GCATGC	2 cut(s)	392, 666
Sse9I	AATT	3 cut(s)	75, 335, 705
SsiI	CCGC	7 cut(s)	114, 359, 558, 594, 627, 700, 702
SspDI	GGCGCC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	3 cut(s)	145, 204, 361
TaaI	ACNGT	3 cut(s)	397, 459, 724
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	477
TasI	AATT	3 cut(s)	75, 335, 705
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	2 cut(s)	361, 702
TfiI	GAWTC	3 cut(s)	22, 209, 527
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	5 cut(s)	48, 390, 435, 585, 727
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	3 cut(s)	355, 416, 696
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	4 cut(s)	17, 68, 303, 603
TspRI	CASTG	5 cut(s)	48, 390, 435, 585, 727
VneI	GTGCAC	1 cut(s)	426
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	3 cut(s)	392, 666, 753
XmiI	GTMKAC	1 cut(s)	71
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.